{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,7,26]],"date-time":"2026-07-26T02:27:08Z","timestamp":1785032828666,"version":"3.55.0"},"reference-count":24,"publisher":"Springer Science and Business Media LLC","issue":"4","license":[{"start":{"date-parts":[[1997,10,1]],"date-time":"1997-10-01T00:00:00Z","timestamp":875664000000},"content-version":"tdm","delay-in-days":0,"URL":"http:\/\/www.springer.com\/tdm"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["J Mol Evol"],"published-print":{"date-parts":[[1997,10]]},"DOI":"10.1007\/pl00006241","type":"journal-article","created":{"date-parts":[[2006,4,10]],"date-time":"2006-04-10T11:13:38Z","timestamp":1144667618000},"page":"359-369","source":"Crossref","is-referenced-by-count":33,"title":["Estimation of evolutionary distances from protein spatial structures"],"prefix":"10.1007","volume":"45","author":[{"given":"Nick V.","family":"Grishin","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"297","reference":[{"key":"45040359_CR1","doi-asserted-by":"crossref","first-page":"261","DOI":"10.2307\/2531811","volume":"43","author":"D Barry","year":"1987","unstructured":"Barry D, Hartigan JA (1987) Asynchronous distance between homologous DNA sequences. Biometrics 43:261\u2013276","journal-title":"Biometrics"},{"key":"45040359_CR2","doi-asserted-by":"crossref","first-page":"823","DOI":"10.1002\/j.1460-2075.1986.tb04288.x","volume":"5","author":"C Chotia","year":"1986","unstructured":"Chotia C, Lesk A (1986) The relation between the divergence of sequence and structure in proteins. The EMBO J 5:823\u2013826","journal-title":"The EMBO J"},{"key":"45040359_CR3","first-page":"89","volume-title":"Atlas of protein sequence and structure","author":"MO Dayhoff","year":"1972","unstructured":"Dayhoff MO, Eck RV, Park CM (1972) A model of evolutionary change in proteins. In: Dayhoff MO (ed) Atlas of protein sequence and structure, 5. National Biomedical Research Foundation, Washington, DC, pp 89\u201399"},{"key":"45040359_CR4","first-page":"345","volume-title":"Atlas of protein sequence and structure","author":"MO Dayhoff","year":"1978","unstructured":"Dayhoff MO, Schwartz RM & Orcutt BC (1978) A model of evolutionary change in proteins. In: Dayhoff MO (ed) Atlas of protein sequence and structure, 5, Suppl 3. National Biomedical Research Foundation, Washington, DC, pp 345\u2013352"},{"key":"45040359_CR5","doi-asserted-by":"crossref","first-page":"1811","DOI":"10.1002\/pro.5560021104","volume":"2","author":"TP Flores","year":"1993","unstructured":"Flores TP, Orengo CA, Moss DS, Thornton JM (1993) Comparison of conformational characteristics in structurally similar protein pairs. Protein Science 2:1811\u20131826","journal-title":"Protein Science"},{"key":"45040359_CR6","doi-asserted-by":"crossref","first-page":"675","DOI":"10.1007\/BF00175826","volume":"41","author":"NV Grishin","year":"1995","unstructured":"Grishin NV (1995) Estimation of the number of amino acid substitutions per site when the substitution rate varies among sites. J Mol Evol 41:675\u2013679","journal-title":"J Mol Evol"},{"key":"45040359_CR7","doi-asserted-by":"crossref","first-page":"206","DOI":"10.1007\/BF00163809","volume":"39","author":"AM Gutin","year":"1994","unstructured":"Gutin AM, Badretdinov AY (1994) Evolution of protein 3D structures as diffusion in multidimensional conformational space. J Mol Evol 39:206\u2013209","journal-title":"J Mol Evol"},{"key":"45040359_CR8","doi-asserted-by":"crossref","first-page":"437","DOI":"10.1007\/BF02102319","volume":"19","author":"R Holmquist","year":"1983","unstructured":"Holmquist R, Goodman M, Conroy T, Czelusniak J (1983) The spatial distribution of fixed mutations within genes coding for proteins. J Mol Evol 19:437\u2013448","journal-title":"J Mol Evol"},{"key":"45040359_CR9","doi-asserted-by":"crossref","first-page":"159","DOI":"10.1093\/protein\/1.3.159","volume":"1","author":"TJP Hubbard","year":"1987","unstructured":"Hubbard TJP, Blundell TL (1987) Comparison of solvent-inaccessible cores of homologous proteins: definitions useful for protein modeling. Protein Engineering 1:159\u2013171","journal-title":"Protein Engineering"},{"key":"45040359_CR10","doi-asserted-by":"crossref","first-page":"151","DOI":"10.1007\/BF02109483","volume":"31","author":"H Kishino","year":"1990","unstructured":"Kishino H, Miyata T, Hasegawa M (1990) Maximum likelihood inference of protein phylogeny and the origin of chloroplasts. J Mol Evol 31:151\u2013160","journal-title":"J Mol Evol"},{"key":"45040359_CR11","doi-asserted-by":"crossref","first-page":"345","DOI":"10.1098\/rsta.1986.0044","volume":"317","author":"AM Lesk","year":"1986","unstructured":"Lesk AM, Chotia CH. (1986) The response of protein structure to amino-acid sequence changes. Phil Trans R Soc Lond A 317:345\u2013356","journal-title":"Phil Trans R Soc Lond A"},{"key":"45040359_CR12","doi-asserted-by":"crossref","first-page":"825","DOI":"10.1101\/SQB.1987.052.01.090","volume":"52","author":"GJ Olsen","year":"1987","unstructured":"Olsen GJ (1987) Earliest phylogenetic branchings: comparing rRNAbased evolutionary trees inferred with various techniques. Cold Spring Harbor Symposia on Quantitative Biology 52:825\u2013837","journal-title":"Cold Spring Harbor Symposia on Quantitative Biology"},{"key":"45040359_CR13","first-page":"642","volume":"38","author":"T Ota","year":"1994","unstructured":"Ota T, Nei M (1994) Estimation of the number of amino acid substitutions per site when the substitution rate varies among sites. J Mol Evol 38:642\u2013643","journal-title":"J Mol Evol"},{"key":"45040359_CR14","first-page":"945","volume":"9","author":"A Rzhetsky","year":"1992","unstructured":"Rzhetsky A, Nei M. (1992) A simple method for estimating and testing minimum-evolution trees. Mol Biol Evol 9:945\u2013967","journal-title":"Mol Biol Evol"},{"key":"45040359_CR15","doi-asserted-by":"crossref","first-page":"261","DOI":"10.1007\/BF02100082","volume":"27","author":"N Saitou","year":"1988","unstructured":"Saitou N (1988) Property and efficiency of the maximum likelihood method for molecular phylogeny. J Mol Evol 27:261\u2013273","journal-title":"J Mol Evol"},{"key":"45040359_CR16","volume-title":"Stochastic process","author":"L. Takacs","year":"1966","unstructured":"Takacs L. (1966) Stochastic process. Methuen & Co LTD, London, John Wiley & Sons Inc., NY"},{"key":"45040359_CR17","first-page":"278","volume":"11","author":"F Tajima","year":"1994","unstructured":"Tajima F, Takezaki N (1994) Estimation of evolutionary distance for reconstructing molecular phylogenetic trees. Mol Biol Evol 11:278\u2013286","journal-title":"Mol Biol Evol"},{"key":"45040359_CR18","first-page":"261","volume":"11","author":"Y Tateno","year":"1994","unstructured":"Tateno Y, Takezaki N, Nei M. (1994) Relative efficiencies of the maximum-likelihood, neighbor-joining, and maximum-parsimony methods when substitution rate varies with site. Mol Biol Evol 11:261\u2013277","journal-title":"Mol Biol Evol"},{"key":"45040359_CR19","doi-asserted-by":"crossref","first-page":"1089","DOI":"10.1126\/science.172.3988.1089","volume":"172","author":"T Uzzel","year":"1971","unstructured":"Uzzel T, Corbin KW (1971) Fitting discrete probability distribution to evolutionary events. Science 172:1089\u20131096","journal-title":"Science"},{"key":"45040359_CR20","first-page":"434","volume":"2","author":"WJ Wilbur","year":"1985","unstructured":"Wilbur WJ (1985) On the PAM matrix model of protein evolution. Mol Biol Evol 2:434\u2013447","journal-title":"Mol Biol Evol"},{"key":"45040359_CR21","first-page":"1396","volume":"10","author":"Z Yang","year":"1993","unstructured":"Yang Z (1993) Maximum-likelihood estimation of phylogeny from DNA sequences when substitution rates differ over sites. Mol Biol Evol 10:1396\u20131401","journal-title":"Mol Biol Evol"},{"key":"45040359_CR22","doi-asserted-by":"crossref","first-page":"306","DOI":"10.1007\/BF00160154","volume":"39","author":"Z Yang","year":"1994","unstructured":"Yang Z (1994) Maximum likelihood phylogenetic estimation from DNA sequences with variable rates over sites: approximate methods. J Mol Evol 39:306\u2013314","journal-title":"J Mol Evol"},{"key":"45040359_CR23","doi-asserted-by":"crossref","first-page":"315","DOI":"10.1007\/BF00160155","volume":"39","author":"A Zharkikh","year":"1994","unstructured":"Zharkikh A (1994) Estimation of evolutionary distances between nucleotide sequences. J Mol Evol 39:315\u2013329","journal-title":"J Mol Evol"},{"key":"45040359_CR24","doi-asserted-by":"crossref","first-page":"97","DOI":"10.1016\/B978-1-4832-2734-4.50017-6","volume-title":"Evolving genes and proteins","author":"E Zuckerkandl","year":"1965","unstructured":"Zuckerkandl E, Pauling L. (1965) Evolutionary divergence and convergence in proteins. In: Bryson V, Vodel HJ (eds) Evolving genes and proteins. Academic Press, NY, pp 97\u2013166"}],"container-title":["Journal of Molecular Evolution"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/PL00006241.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/article\/10.1007\/PL00006241\/fulltext.html","content-type":"text\/html","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/PL00006241","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2023,5,7]],"date-time":"2023-05-07T01:06:21Z","timestamp":1683421581000},"score":1,"resource":{"primary":{"URL":"http:\/\/link.springer.com\/10.1007\/PL00006241"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[1997,10]]},"references-count":24,"journal-issue":{"issue":"4","published-print":{"date-parts":[[1997,10]]}},"alternative-id":["45040359"],"URL":"https:\/\/doi.org\/10.1007\/pl00006241","relation":{},"ISSN":["0022-2844","1432-1432"],"issn-type":[{"value":"0022-2844","type":"print"},{"value":"1432-1432","type":"electronic"}],"subject":[],"published":{"date-parts":[[1997,10]]}}}