{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,2,21]],"date-time":"2025-02-21T11:03:00Z","timestamp":1740135780026,"version":"3.37.3"},"reference-count":47,"publisher":"Springer Science and Business Media LLC","issue":"1","license":[{"start":{"date-parts":[[2018,9,5]],"date-time":"2018-09-05T00:00:00Z","timestamp":1536105600000},"content-version":"tdm","delay-in-days":0,"URL":"http:\/\/www.springer.com\/tdm"}],"funder":[{"DOI":"10.13039\/501100012166","name":"National Basic Research Program of China","doi-asserted-by":"crossref","award":["2014CB748600"],"award-info":[{"award-number":["2014CB748600"]}],"id":[{"id":"10.13039\/501100012166","id-type":"DOI","asserted-by":"crossref"}]},{"DOI":"10.13039\/501100001809","name":"National Natural Science Foundation of China","doi-asserted-by":"crossref","award":["81371629"],"award-info":[{"award-number":["81371629"]}],"id":[{"id":"10.13039\/501100001809","id-type":"DOI","asserted-by":"crossref"}]},{"DOI":"10.13039\/501100001809","name":"National Natural Science Foundation of China","doi-asserted-by":"crossref","award":["61401293"],"award-info":[{"award-number":["61401293"]}],"id":[{"id":"10.13039\/501100001809","id-type":"DOI","asserted-by":"crossref"}]},{"DOI":"10.13039\/501100001809","name":"National Natural Science Foundation of China","doi-asserted-by":"crossref","award":["61401294"],"award-info":[{"award-number":["61401294"]}],"id":[{"id":"10.13039\/501100001809","id-type":"DOI","asserted-by":"crossref"}]},{"DOI":"10.13039\/501100001809","name":"National Natural Science Foundation of China","doi-asserted-by":"crossref","award":["81401451"],"award-info":[{"award-number":["81401451"]}],"id":[{"id":"10.13039\/501100001809","id-type":"DOI","asserted-by":"crossref"}]},{"DOI":"10.13039\/501100001809","name":"National Natural Science Foundation of China","doi-asserted-by":"crossref","award":["81401472"],"award-info":[{"award-number":["81401472"]}],"id":[{"id":"10.13039\/501100001809","id-type":"DOI","asserted-by":"crossref"}]}],"content-domain":{"domain":["link.springer.com"],"crossmark-restriction":false},"short-container-title":["J Digit Imaging"],"published-print":{"date-parts":[[2019,2]]},"DOI":"10.1007\/s10278-017-0047-6","type":"journal-article","created":{"date-parts":[[2018,9,5]],"date-time":"2018-09-05T20:56:57Z","timestamp":1536181017000},"page":"183-197","update-policy":"https:\/\/doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":3,"title":["OIPAV: an Integrated Software System for Ophthalmic Image Processing, Analysis, and Visualization"],"prefix":"10.1007","volume":"32","author":[{"given":"Lichun","family":"Zhang","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Dehui","family":"Xiang","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Chao","family":"Jin","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Fei","family":"Shi","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Kai","family":"Yu","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Xinjian","family":"Chen","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"297","published-online":{"date-parts":[[2018,9,5]]},"reference":[{"issue":"3","key":"47_CR1","doi-asserted-by":"publisher","first-page":"205","DOI":"10.1007\/s10278-004-1014-6","volume":"17","author":"A Rosset","year":"2004","unstructured":"Rosset A, Spadola L, Ratib O: OsiriX: an open-source software for navigating in multidimensional DICOM images. J Digit Imaging 17(3):205\u2013216, 2004","journal-title":"J Digit Imaging"},{"key":"47_CR2","first-page":"632","volume":"1","author":"S Pieper","year":"2004","unstructured":"Pieper S, Halle M, Kikinis R: 3D Slicer[C]. IEEE International Symposium on Biomedical Imaging: Nano To Macro. IEEE 1:632\u2013635, 2004","journal-title":"IEEE"},{"key":"47_CR3","doi-asserted-by":"crossref","unstructured":"Fabian N, Moreland K, Thompson D, et al: The ParaView Coprocessing Library: A scalable, general purpose in situ visualization library. Large Data Analysis and Visualization. IEEE: 89\u201396, 2011","DOI":"10.1109\/LDAV.2011.6092322"},{"issue":"5","key":"47_CR4","doi-asserted-by":"publisher","first-page":"20","DOI":"10.1109\/38.865875","volume":"20","author":"WJ Schroeder","year":"2000","unstructured":"Schroeder WJ, Avila LS, Hoffman W: Visualizing with VTK: A tutorial[J]. IEEE Comput Graph Appl 20(5):20\u201327, 2000","journal-title":"IEEE Comput Graph Appl"},{"key":"47_CR5","doi-asserted-by":"crossref","unstructured":"Schroeder WJ, Martin KM, Lorensen WE: The design and implementation of an object-oriented toolkit for 3D graphics and visualization. Conference on Visualization. IEEE Computer Society Press, 1996, 93-ff","DOI":"10.1109\/VISUAL.1996.567752"},{"key":"47_CR6","first-page":"231","volume":"21","author":"L Ibanez","year":"2003","unstructured":"Ibanez L, Schroeder WJ, Ng L et al.: The ITK Software Guide: The Insight Segmentation and Registration Toolkit[J]. Comput Stat Data Anal 21:231\u2013256, 2003","journal-title":"Comput Stat Data Anal"},{"issue":"4","key":"47_CR7","doi-asserted-by":"publisher","first-page":"607","DOI":"10.1007\/s11548-013-0840-8","volume":"8","author":"M Nolden","year":"2013","unstructured":"Nolden M, Zelzer S, Seitel A et al.: The Medical Imaging Interaction Toolkit: challenges and advances: 10 years of open-source development. Int J Comput Assist Radiol Surg 8(4):607, 2013","journal-title":"Int J Comput Assist Radiol Surg"},{"key":"47_CR8","doi-asserted-by":"publisher","first-page":"16","DOI":"10.1117\/12.535112","volume":"5367","author":"I Wolf","year":"2004","unstructured":"Wolf I, Vetter M, Wegner I, Nolden M et al.: The Medical Imaging Interaction Toolkit (MITK) \u2013 a toolkit facilitating the creation of interactive software by extending VTK and ITK. Proc SPIE 5367:16\u201327, 2004","journal-title":"Proc SPIE"},{"issue":"1","key":"47_CR9","doi-asserted-by":"publisher","first-page":"133","DOI":"10.1109\/TVCG.2009.58","volume":"16","author":"K Muehler","year":"2010","unstructured":"Muehler K, Tietjen C, Ritter F et al.: The Medical Exploration Toolkit: An Efficient Support for Visual Computing in Surgical Planning and Training[J]. IEEE Trans Vis Comput Graph 16(1):133\u2013146, 2010","journal-title":"IEEE Trans Vis Comput Graph"},{"issue":"4","key":"47_CR10","doi-asserted-by":"publisher","first-page":"920","DOI":"10.1007\/s003300101100","volume":"12","author":"P Mildenberger","year":"2002","unstructured":"Mildenberger P, Eichelberg M, Martin E: Introduction to the DICOM standard[J]. Eur Radiol 12(4):920, 2002","journal-title":"Eur Radiol"},{"key":"47_CR11","doi-asserted-by":"crossref","unstructured":"Shi F, Chen X, Zhao H, et al: Automated 3-D Retinal Layer Segmentation of Macular Optical Coherence Tomography Images. IEEE Trans Med Imaging Papers 34(2): 441\u2013452","DOI":"10.1109\/TMI.2014.2359980"},{"key":"47_CR12","doi-asserted-by":"crossref","unstructured":"Chen X, Niemeijer M, Zhang L, et al: 3D Segmentation of Fluid-Associated Abnormalities in Retinal OCT: Probability Constrained Graph-Search-Graph-Cut. IEEE Trans Med Imaging Papers 31(8): 1521\u20131531","DOI":"10.1109\/TMI.2012.2191302"},{"key":"47_CR13","doi-asserted-by":"crossref","unstructured":"Sun Z, Chen H, Shi F, et al: An automated framework for 3D serous pigment epithelium detachment segmentation in SD-OCT images. Scientific Reports 6(298): 243\u2013244","DOI":"10.1038\/srep21739"},{"key":"47_CR14","doi-asserted-by":"crossref","unstructured":"Wu B, Zhu W, Shi F, et al: Automatic detection of microaneurysms in retinal fundus images.[J]. Computerized Medical Imaging & Graphics the Official Journal of the Computerized Medical Imaging Society, 2016","DOI":"10.1016\/j.compmedimag.2016.08.001"},{"key":"47_CR15","doi-asserted-by":"crossref","unstructured":"Zhang L, Zhu W, Shi F, et al: Automated segmentation of intraretinal cystoid macular edema for retinal 3D OCT images with macular hole[C]\/\/ IEEE, International Symposium on Biomedical imaging. IEEE 1494\u20131497, 2015","DOI":"10.1109\/ISBI.2015.7164160"},{"issue":"7","key":"47_CR16","doi-asserted-by":"publisher","first-page":"3518","DOI":"10.1109\/TIP.2017.2696747","volume":"26","author":"J Guo","year":"2017","unstructured":"Guo J, Zhu W, Shi F et al.: A Framework for Classification and Segmentation of Branch Retinal Artery Occlusion in SD-OCT.[J]. IEEE Trans Image Process 26(7):3518\u20133527, 2017","journal-title":"IEEE Trans Image Process"},{"key":"47_CR17","doi-asserted-by":"crossref","unstructured":"Zhu S, Fei S, Xiang D, et al: Choroid Neovascularization Growth Prediction with Treatment Based on Reaction-Diffusion Model in 3D OCT Images[J]. IEEE Journal of Biomedical & Health Informatics PP(99):1\u20131, 2017","DOI":"10.1109\/JBHI.2017.2702603"},{"key":"47_CR18","doi-asserted-by":"publisher","unstructured":"Sun M, Zhang Z, Ma C, et al: Quantitative analysis of retinal layers on three-dimensional spectral-domain optical coherence tomography for pituitary adenoma[J]. Plos One in Press, 2017 https:\/\/doi.org\/10.1371\/journal.pone.0179532","DOI":"10.1371\/journal.pone.0179532"},{"key":"47_CR19","doi-asserted-by":"publisher","first-page":"25433","DOI":"10.1038\/srep25433","volume":"6","author":"W Zhu","year":"2016","unstructured":"Zhu W, Chen H, Zhao H et al.: Automatic Three-dimensional Detection of Photoreceptor Ellipsoid Zone Disruption Caused by Trauma in the OCT[J]. Sci Rep 6:25433, 2016","journal-title":"Sci Rep"},{"issue":"7","key":"47_CR20","doi-asserted-by":"publisher","first-page":"76008","DOI":"10.1117\/1.JBO.21.7.076008","volume":"21","author":"I Kopriva","year":"2016","unstructured":"Kopriva I, Shi F, Chen X: Enhanced low-rank + sparsity decomposition for speckle reduction in optical coherence tomography[J]. J Biomed Opt 21(7):76008, 2016","journal-title":"J Biomed Opt"},{"issue":"12","key":"47_CR21","doi-asserted-by":"publisher","first-page":"126017","DOI":"10.1117\/1.JBO.21.12.126017","volume":"21","author":"F Shi","year":"2016","unstructured":"Shi F, Tian B, Zhu W et al.: Automated choroid segmentation in three-dimensional 1-\u03bcm wide-view OCT images with gradient and regional costs[J]. J Biomed Opt 21(12):126017, 2016","journal-title":"J Biomed Opt"},{"key":"47_CR22","unstructured":"Chen X, Zhu W, Wang L, et al: Automated Detection of IS\/OS Defect Regions in 3D OCT Images. ARVO 2014"},{"key":"47_CR23","first-page":"57","volume":"5371","author":"M Eichelberg","year":"2004","unstructured":"Eichelberg M, Riesmeier J: Ten years of medical imaging standardization and prototypical implementation: the DICOM standard and the OFFIS DICOM toolkit (DCMTK)[J]. Proc SPIE Int Soc Opt Eng 5371:57\u201368, 2004","journal-title":"Proc SPIE Int Soc Opt Eng"},{"key":"47_CR24","doi-asserted-by":"crossref","unstructured":"Toussaint N, Sermesant M, Fillard P: vtkinria3d: A VTK Extension for Spatiotemporal Data Synchronization, Visualization and Management. In Proc. of Workshop on Open Source and Open Data for MICCAI 2007","DOI":"10.54294\/wh8hx1"},{"key":"47_CR25","unstructured":"Blanchette J, Summerfield M: C++ GUI Programming with Qt 4[J] 45(6): 747\u2013749, 2006"},{"key":"47_CR26","unstructured":"Martin KW, Hoffman B: Mastering CMake : A Cross-Platform Build System[M]. Kitware 2010"},{"key":"47_CR27","unstructured":"Loeliger J: Version Control with Git: Powerful Tools and Techniques for Collaborative Software Development[D]. O'Reilly Media, Inc 2012"},{"key":"47_CR28","doi-asserted-by":"crossref","unstructured":"Huang HK: PACS and Imaging Informatics: Basic Principles and Applications[M] 2005","DOI":"10.1002\/0471654787"},{"issue":"1","key":"47_CR29","doi-asserted-by":"publisher","first-page":"57","DOI":"10.1055\/s-2001-10417","volume":"173","author":"R Eibel","year":"2001","unstructured":"Eibel R, T\u00fcrk T, Kulinna C et al.: [Value of multiplanar reformations (MPR)in multi-slice spiral CT of the lung][J]. Rofo 173(1):57\u201364, 2001","journal-title":"Rofo"},{"issue":"3","key":"47_CR30","doi-asserted-by":"publisher","first-page":"29","DOI":"10.1109\/38.511","volume":"20","author":"M Levoy","year":"1988","unstructured":"Levoy M: Display of surfaces from volume data[J]. IEEE Comput Graph Appl 20(3):29\u201337, 1988","journal-title":"IEEE Comput Graph Appl"},{"key":"47_CR31","doi-asserted-by":"crossref","unstructured":"Cabral B: Accelerated volume rendering and tomographic reconstruction using texture mapping hardware[C]. Symp Onvisualization DBLP 91\u201398, 1995","DOI":"10.1145\/197938.197972"},{"key":"47_CR32","doi-asserted-by":"crossref","unstructured":"Lorensen WE, Cline HE: Marching cubes: A high resolution 3D surface construction algorithm[C]\/\/ACM siggraph computer graphics. ACM, 21(4):163\u2013169, 1987","DOI":"10.1145\/37402.37422"},{"issue":"6","key":"47_CR33","doi-asserted-by":"publisher","first-page":"e0128925","DOI":"10.1371\/journal.pone.0128925","volume":"10","author":"E Gao","year":"2015","unstructured":"Gao E, Chen B, Yang J et al.: Comparison of Retinal Thickness Measurements between the Topcon Algorithm and a Graph-Based Algorithm in Normal and Glaucoma Eyes[J]. Plos One 10(6):e0128925, 2015","journal-title":"Plos One"},{"issue":"8","key":"47_CR34","doi-asserted-by":"publisher","first-page":"3662","DOI":"10.1167\/iovs.06-1401","volume":"48","author":"DC Hood","year":"2007","unstructured":"Hood DC, Anderson SC, Wall M, Kardon RH: Structure versus function in glaucoma: an application of a linear model. Invest Ophthalmol Vis Sci 48(8):3662\u20133668, 2007","journal-title":"Invest Ophthalmol Vis Sci"},{"issue":"10","key":"47_CR35","doi-asserted-by":"publisher","first-page":"9269","DOI":"10.1038\/srep09269","volume":"5","author":"H Chen","year":"2015","unstructured":"Chen H, Chen X, Qiu Z et al.: Quantitative analysis of retinal layers' optical intensities on 3D optical coherence tomography for central retinal artery occlusion[J]. Sci Rep 5(10):9269, 2015","journal-title":"Sci Rep"},{"issue":"2","key":"47_CR36","doi-asserted-by":"publisher","first-page":"e0148183","DOI":"10.1371\/journal.pone.0148183","volume":"11","author":"B Chen","year":"2016","unstructured":"Chen B, Gao E, Chen H et al.: Profile and Determinants of Retinal Optical Intensity in Normal Eyes with Spectral Domain Optical Coherence Tomography[J]. Plos One 11(2):e0148183, 2016","journal-title":"Plos One"},{"key":"47_CR37","doi-asserted-by":"publisher","first-page":"657","DOI":"10.4236\/jbise.2011.410082","volume":"4","author":"W Gao","year":"2011","unstructured":"Gao W et al.: Investigation of changes in thickness and reflectivity from layered retinal structures of healthy and diabetic eyes with optical coherence tomography. J Biomed Sci Eng 4:657\u2013665, 2011","journal-title":"J Biomed Sci Eng"},{"key":"47_CR38","doi-asserted-by":"crossref","unstructured":"Belghith A, Bowd C, Medeiros FA, et al: Automated segmentation of anterior lamina cribrosa surface: How the lamina cribrosa responds to intraocular pressure change in glaucoma eyes[C]\/\/ IEEE, International Symposium on Biomedical Imaging. IEEE 222\u2013225, 2015","DOI":"10.1109\/ISBI.2015.7163854"},{"issue":"11","key":"47_CR39","doi-asserted-by":"publisher","first-page":"2596","DOI":"10.1364\/BOE.4.002596","volume":"4","author":"Z Nadler","year":"2013","unstructured":"Nadler Z, Wang B, Wollstein G et al.: Automated lamina cribrosa microstructural segmentation in optical coherence tomography scans of healthy and glaucomatous eyes.[J]. Biomed Opt Express 4(11):2596\u20132608, 2013","journal-title":"Biomed Opt Express"},{"key":"47_CR40","doi-asserted-by":"crossref","unstructured":"Kwatra V, Essa I, Turk G, et al: Graphcut textures: image and video synthesis using graph cuts[C]\/\/ ACM SIGGRAPH. ACM 277\u2013286, 2003","DOI":"10.1145\/882262.882264"},{"issue":"3","key":"47_CR41","doi-asserted-by":"publisher","first-page":"781","DOI":"10.1109\/TNN.2005.848998","volume":"16","author":"CKI Williams","year":"2005","unstructured":"Williams CKI: Learning With Kernels: Support Vector Machines, Regularization, Optimization, and Beyond[J]. IEEE Trans Neural Netw 16(3):781\u2013781, 2005","journal-title":"IEEE Trans Neural Netw"},{"key":"47_CR42","unstructured":"Freund Y: Experiment With a New Boosting Algorithm[C]. Thirteenth Int Conf Mach Learn 148\u2013156, 1996"},{"key":"47_CR43","unstructured":"Liaw A, Wiener M: Classification and Regression by randomForest[J]. R News 23(23), 2002"},{"key":"47_CR44","unstructured":"Gamma E, Helm R, Johnson R, et al: Design patterns: elements of reusable object-oriented software[J] 49(2):241\u2013276, 1995"},{"key":"47_CR45","unstructured":"Kitware: The VTK user's guide[J]. 2010"},{"issue":"3","key":"47_CR46","doi-asserted-by":"publisher","first-page":"719","DOI":"10.1148\/radiol.11091710","volume":"261","author":"GB Van","year":"2011","unstructured":"Van GB, Schaefer-Prokop CM, Prokop M: Computer-aided diagnosis: how to move from the laboratory to the clinic[J]. Radiology 261(3):719, 2011","journal-title":"Radiology"},{"key":"47_CR47","unstructured":"Conway RW, Schneider FB: User Recovery and Reversal in Interactive Systems[M]. Cornell University 1981"}],"container-title":["Journal of Digital Imaging"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/link.springer.com\/article\/10.1007\/s10278-017-0047-6\/fulltext.html","content-type":"text\/html","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/s10278-017-0047-6.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/s10278-017-0047-6.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2022,8,31]],"date-time":"2022-08-31T20:21:55Z","timestamp":1661977315000},"score":1,"resource":{"primary":{"URL":"http:\/\/link.springer.com\/10.1007\/s10278-017-0047-6"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2018,9,5]]},"references-count":47,"journal-issue":{"issue":"1","published-print":{"date-parts":[[2019,2]]}},"alternative-id":["47"],"URL":"https:\/\/doi.org\/10.1007\/s10278-017-0047-6","relation":{},"ISSN":["0897-1889","1618-727X"],"issn-type":[{"type":"print","value":"0897-1889"},{"type":"electronic","value":"1618-727X"}],"subject":[],"published":{"date-parts":[[2018,9,5]]},"assertion":[{"value":"5 September 2018","order":1,"name":"first_online","label":"First Online","group":{"name":"ArticleHistory","label":"Article History"}}]}}