{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,10,26]],"date-time":"2025-10-26T14:17:55Z","timestamp":1761488275189},"reference-count":28,"publisher":"Springer Science and Business Media LLC","issue":"2","license":[{"start":{"date-parts":[[2009,6,30]],"date-time":"2009-06-30T00:00:00Z","timestamp":1246320000000},"content-version":"tdm","delay-in-days":0,"URL":"http:\/\/www.springer.com\/tdm"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["Appl Intell"],"published-print":{"date-parts":[[2010,4]]},"DOI":"10.1007\/s10489-009-0189-4","type":"journal-article","created":{"date-parts":[[2009,6,29]],"date-time":"2009-06-29T16:40:05Z","timestamp":1246293605000},"page":"164-172","source":"Crossref","is-referenced-by-count":22,"title":["AlineaGA\u2014a genetic algorithm with local search optimization for\u00a0multiple sequence alignment"],"prefix":"10.1007","volume":"32","author":[{"given":"Fernando Jos\u00e9 Mateus","family":"da Silva","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Juan Manuel","family":"S\u00e1nchez\u00a0P\u00e9rez","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Juan Antonio","family":"G\u00f3mez\u00a0Pulido","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Miguel A.","family":"Vega\u00a0Rodr\u00edguez","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"297","published-online":{"date-parts":[[2009,6,30]]},"reference":[{"key":"189_CR1","doi-asserted-by":"crossref","first-page":"601","DOI":"10.1109\/TSMCC.2005.855515","volume":"36","author":"SK Pal","year":"2006","unstructured":"Pal SK, Bandyopadhyay S, Ray SS (2006) Evolutionary computation in bioinformatics: a review. IEEE Trans Syst Man Cybern C Appl Rev 36:601\u2013615","journal-title":"IEEE Trans Syst Man Cybern C Appl Rev"},{"key":"189_CR2","doi-asserted-by":"crossref","first-page":"407","DOI":"10.1007\/s00500-004-0356-9","volume":"9","author":"J Horng","year":"2005","unstructured":"Horng J, Wu L, Lin C, Yang B (2005) A genetic algorithm for multiple sequence alignment. Soft Comput 9:407\u2013420","journal-title":"Soft Comput"},{"key":"189_CR3","doi-asserted-by":"crossref","first-page":"205","DOI":"10.1006\/jmbi.2000.4042","volume":"302","author":"C Notredame","year":"2000","unstructured":"Notredame C, Higgins DG, Heringa J (2000) T-Coffee: a novel method for fast and accurate multiple sequence alignment. J\u00a0Mol Biol 302:205\u2013217","journal-title":"J\u00a0Mol Biol"},{"key":"189_CR4","doi-asserted-by":"crossref","first-page":"126","DOI":"10.1016\/S0014-5793(02)03189-7","volume":"529","author":"T Lassmann","year":"2002","unstructured":"Lassmann T, Sonnhammer ELL (2002) Quality assessment of multiple alignment programs. FEBS Lett 529:126\u2013130","journal-title":"FEBS Lett"},{"issue":"1\u20132","key":"189_CR5","doi-asserted-by":"crossref","first-page":"17","DOI":"10.1016\/S0378-1119(01)00461-9","volume":"270","author":"O Lecompte","year":"2001","unstructured":"Lecompte O, Thompsony JD, Plewniak F, Thierry J-C, Poch O (2001) Multiple alignment of complete sequences (MACS) in the post-genomic era. Gene 270(1\u20132):17\u201330","journal-title":"Gene"},{"key":"189_CR6","first-page":"858","volume":"78","author":"LA Anbarasu","year":"2000","unstructured":"Anbarasu LA, Narayanasamy P, Sundararajan V (2000) Multiple molecular sequence alignment by island parallel genetic algorithm. Curr Sci 78:858\u2013863","journal-title":"Curr Sci"},{"key":"189_CR7","volume-title":"Adaptation in natural and artificial systems","author":"JH Holland","year":"1975","unstructured":"Holland JH (1975) Adaptation in natural and artificial systems. Univ Mich Press, Ann Arbor"},{"key":"189_CR8","doi-asserted-by":"crossref","DOI":"10.1007\/978-3-662-03315-9","volume-title":"Genetic algorithms + data structures = evolution programs","author":"Z Michalewicz","year":"1996","unstructured":"Michalewicz Z (1996) Genetic algorithms + data structures = evolution programs, 3rd, Revised and Extended Edition. Springer, Berlin","edition":"3"},{"key":"189_CR9","first-page":"121","volume":"3","author":"K Jong De","year":"1988","unstructured":"De Jong K (1988) Learning with genetic algorithms: an overview. Mach Learn 3:121\u2013138","journal-title":"Mach Learn"},{"key":"189_CR10","doi-asserted-by":"crossref","first-page":"3","DOI":"10.1007\/3-540-32363-5_1","volume":"166","author":"WE Hart","year":"2004","unstructured":"Hart WE, Krasnogor N, Smith JE (2004) Memetic evolutionary algorithms. Stud Fuzz Soft Comput 166:3\u201330","journal-title":"Stud Fuzz Soft Comput"},{"key":"189_CR11","first-page":"269","volume-title":"Lecture notes in computer science","author":"PD Surry","year":"1996","unstructured":"Surry PD, Radcliffe NJ (1996) Inoculation to initialise evolutionary search. In: Lecture notes in computer science. Springer, Berlin, pp\u00a0269\u2013285"},{"key":"189_CR12","first-page":"453","volume-title":"Proceedings of the 1997 IEEE international conference on evolutionary computation","author":"JE Smith","year":"1997","unstructured":"Smith JE, Bartley M, Fogarty TC (1997) Microprocessor design verification by two-phase evolution of variable length tests. In: Proceedings of the 1997 IEEE international conference on evolutionary computation. IEEE Press, Indianapolis, pp\u00a0453\u2013458"},{"key":"189_CR13","doi-asserted-by":"crossref","first-page":"1515","DOI":"10.1093\/nar\/24.8.1515","volume":"24","author":"C Notredame","year":"1996","unstructured":"Notredame C, Higgins DG (1996) SAGA: sequence alignment by genetic algorithm. Nucl Acids Res 24:1515\u20131524","journal-title":"Nucl Acids Res"},{"key":"189_CR14","unstructured":"Silva FJM, S\u00e1nchez P\u00e9rez JM, G\u00f3mez Pulido JA, Vega Rodr\u00edguez MA (2007) Alineamiento m\u00faltiple de secuencias utilizando algoritmos gen\u00e9ticos: revisi\u00f3n. In: Segundo congreso Espa\u00f1ol de inform\u00e1tica, CEDI, Zaragoza, Spain, pp 41\u201348"},{"key":"189_CR15","first-page":"176","volume":"7","author":"M Isokawa","year":"1996","unstructured":"Isokawa M, Wayama M, Toshio S (1996) Multiple sequence alignment using a genetic algorithm. Genome Inf 7:176\u2013177","journal-title":"Genome Inf"},{"key":"189_CR16","first-page":"122","volume":"6","author":"M Wayama","year":"1995","unstructured":"Wayama M, Takahashi K, Shimizu T (1995) An approach to amino acid sequence alignment using a genetic algorithm. Genome Inf 6:122\u2013123","journal-title":"Genome Inf"},{"key":"189_CR17","first-page":"565","volume":"13","author":"C Zhang","year":"1997","unstructured":"Zhang C, Wong AKC (1997) A genetic algorithm for multiple molecular sequence alignment. Comput Appl Biosci 13:565\u2013581","journal-title":"Comput Appl Biosci"},{"key":"189_CR18","doi-asserted-by":"crossref","first-page":"200","DOI":"10.1186\/1471-2105-6-200","volume":"6","author":"C Wang","year":"2005","unstructured":"Wang C, Lefkowitz EJ (2005) Genomic multiple sequence alignments: refinement using a genetic algorithm. BMC Bioinf 6:200","journal-title":"BMC Bioinf"},{"key":"189_CR19","doi-asserted-by":"crossref","first-page":"1647","DOI":"10.1093\/nar\/29.7.1647","volume":"29","author":"T Rognes","year":"2001","unstructured":"Rognes T (2001) ParAlign: a parallel sequence alignment algorithm for rapid and sensitive database searches. Nucl Acids Res 29:1647\u20131652","journal-title":"Nucl Acids Res"},{"key":"189_CR20","doi-asserted-by":"crossref","first-page":"309","DOI":"10.1007\/978-3-540-79355-7_30","volume-title":"New challenges in applied intelligence technologies","author":"FJM Silva","year":"2008","unstructured":"Silva FJM, S\u00e1nchez P\u00e9rez JM, G\u00f3mez Pulido JA, Vega Rodr\u00edguez MA (2008) AlineaGA: a genetic algorithm for multiple sequence alignment. In: Nguyen NT, Katarzyniak R (eds) New challenges in applied intelligence technologies, vol\u00a0134. Springer, Berlin, pp\u00a0309\u2013318"},{"key":"189_CR21","volume-title":"Genetic algorithms in search, optimization, and machine learning","author":"DE Goldberg","year":"1989","unstructured":"Goldberg DE (1989) Genetic algorithms in search, optimization, and machine learning. Addison-Wesley, Reading"},{"key":"189_CR22","doi-asserted-by":"crossref","first-page":"4570","DOI":"10.1093\/nar\/25.22.4570","volume":"25","author":"C Notredame","year":"1997","unstructured":"Notredame C, O\u2019Brien EA, Higgins DG (1997) RAGA: RNA sequence alignment by genetic algorithm. Nucl Acids Res 25:4570\u20134580","journal-title":"Nucl Acids Res"},{"key":"189_CR23","unstructured":"Dayhoff MO, Schwartz RM, Orcutt BC (1978) A model of evolutionary change in proteins. Atlas of protein sequence and structure, vol\u00a05. National Biomedical Research Foundation, pp\u00a0345\u2013352"},{"key":"189_CR24","doi-asserted-by":"crossref","first-page":"572","DOI":"10.2144\/02323rv01","volume":"32","author":"HB Nicholas Jr","year":"2002","unstructured":"Nicholas HB Jr, Ropelewski AJ, Deerfield DW II (2002) Strategies for multiple sequence alignment. BioTech 32:572\u2013591","journal-title":"BioTech"},{"key":"189_CR25","first-page":"1468","volume-title":"Proceedings of the 9th annual conference on genetic and evolutionary computation","author":"X Huayang","year":"2007","unstructured":"Huayang X, Mengjie Z, Peter A (2007) Another investigation on tournament selection: modelling and visualisation. In: Proceedings of the 9th annual conference on genetic and evolutionary computation. ACM, London, pp\u00a01468\u20131475"},{"key":"189_CR26","first-page":"445","volume-title":"Evolutionary computation, 1999. CEC 99. Proceedings of the 1999 congress on","author":"K Chellapilla","year":"1999","unstructured":"Chellapilla K, Fogel GB (1999) Multiple sequence alignment using evolutionary programming. In: Angeline PJ, Michalewicz Z, Schoenauer M, Yao X, Zalzala A (eds) Evolutionary computation, 1999. CEC 99. Proceedings of the 1999 congress on. IEEE Press, Washington, pp\u00a0445\u2013452"},{"key":"189_CR27","first-page":"883","volume-title":"Proceedings of the genetic and evolutionary computation conference (GECCO-2000)","author":"J-T Horng","year":"2000","unstructured":"Horng J-T, Lin C-M, Liu B-J, Kao C-Y (2000) Using genetic algorithms to solve multiple sequence alignments. In: Whitley LD, Goldberg DE, Cantu-Paz E, Spector L, Parmee IC, Beyer H-G (eds) Proceedings of the genetic and evolutionary computation conference (GECCO-2000). Morgan Kaufmann, Las Vegas, pp\u00a0883\u2013890"},{"key":"189_CR28","doi-asserted-by":"crossref","first-page":"190","DOI":"10.1093\/nar\/gkm895","volume":"36","author":"U Consortium","year":"2008","unstructured":"Consortium U (2008) The universal protein resource (UniProt). Nucl Acids Res 36:190\u2013195","journal-title":"Nucl Acids Res"}],"container-title":["Applied Intelligence"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/s10489-009-0189-4.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/article\/10.1007\/s10489-009-0189-4\/fulltext.html","content-type":"text\/html","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/s10489-009-0189-4","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2019,5,29]],"date-time":"2019-05-29T18:25:43Z","timestamp":1559154343000},"score":1,"resource":{"primary":{"URL":"http:\/\/link.springer.com\/10.1007\/s10489-009-0189-4"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2009,6,30]]},"references-count":28,"journal-issue":{"issue":"2","published-print":{"date-parts":[[2010,4]]}},"alternative-id":["189"],"URL":"https:\/\/doi.org\/10.1007\/s10489-009-0189-4","relation":{},"ISSN":["0924-669X","1573-7497"],"issn-type":[{"value":"0924-669X","type":"print"},{"value":"1573-7497","type":"electronic"}],"subject":[],"published":{"date-parts":[[2009,6,30]]}}}