{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,11,6]],"date-time":"2025-11-06T16:11:36Z","timestamp":1762445496273,"version":"3.37.3"},"reference-count":32,"publisher":"Springer Science and Business Media LLC","issue":"14","license":[{"start":{"date-parts":[[2024,3,9]],"date-time":"2024-03-09T00:00:00Z","timestamp":1709942400000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.springernature.com\/gp\/researchers\/text-and-data-mining"},{"start":{"date-parts":[[2024,3,9]],"date-time":"2024-03-09T00:00:00Z","timestamp":1709942400000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/www.springernature.com\/gp\/researchers\/text-and-data-mining"}],"content-domain":{"domain":["link.springer.com"],"crossmark-restriction":false},"short-container-title":["Educ Inf Technol"],"published-print":{"date-parts":[[2024,10]]},"DOI":"10.1007\/s10639-024-12582-6","type":"journal-article","created":{"date-parts":[[2024,3,9]],"date-time":"2024-03-09T13:01:22Z","timestamp":1709989282000},"page":"18451-18475","update-policy":"https:\/\/doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":4,"title":["High-performance computing in undergraduate education at primarily undergraduate institutions in Wisconsin: Progress, challenges, and opportunities"],"prefix":"10.1007","volume":"29","author":[{"given":"Jordan","family":"Hebert","sequence":"first","affiliation":[]},{"given":"Ryan","family":"Hratisch","sequence":"additional","affiliation":[]},{"given":"Rahul","family":"Gomes","sequence":"additional","affiliation":[]},{"given":"William","family":"Kunkel","sequence":"additional","affiliation":[]},{"given":"Daniel","family":"Marshall","sequence":"additional","affiliation":[]},{"given":"Abhimanyu","family":"Ghosh","sequence":"additional","affiliation":[]},{"given":"Isabella","family":"Doss","sequence":"additional","affiliation":[]},{"given":"Ying","family":"Ma","sequence":"additional","affiliation":[]},{"given":"Derek","family":"Stedman","sequence":"additional","affiliation":[]},{"given":"Blake","family":"Stinson","sequence":"additional","affiliation":[]},{"given":"Anthony","family":"Varghese","sequence":"additional","affiliation":[]},{"given":"Molly","family":"Mohr","sequence":"additional","affiliation":[]},{"given":"Pricilla","family":"Rozario","sequence":"additional","affiliation":[]},{"ORCID":"https:\/\/orcid.org\/0000-0002-3960-1239","authenticated-orcid":false,"given":"Sudeep","family":"Bhattacharyya","sequence":"additional","affiliation":[]}],"member":"297","published-online":{"date-parts":[[2024,3,9]]},"reference":[{"key":"12582_CR1","doi-asserted-by":"publisher","unstructured":"Adenaike, O., Olabanjo, O. E., & Adedeji, A. A. (2023) Integrating computational skills in undergraduate microbiology curricula in developing countries. Biology Methods and Protocols, 8.  https:\/\/doi.org\/10.1093\/biomethods\/bpad008","DOI":"10.1093\/biomethods\/bpad008"},{"key":"12582_CR2","doi-asserted-by":"publisher","first-page":"11782","DOI":"10.3390\/su132111782","volume":"13","author":"T Al-Jody","year":"2021","unstructured":"Al-Jody, T., Aagela, H., & Holmes, V. (2021). Inspiring the next generation of hpc engineers with reconfigurable, multi-tenant resources for teaching and research. Sustainability (switzerland),13, 11782. https:\/\/doi.org\/10.3390\/su132111782","journal-title":"Sustainability (switzerland)"},{"key":"12582_CR3","unstructured":"Bethune, I., Carter, A., Guo, X., & Korosoglou, P. (2012). Million atom KS-DFT with CP2K partnership for advanced computing in Europe. https:\/\/era.ed.ac.uk\/handle\/1842\/6543"},{"key":"12582_CR4","doi-asserted-by":"publisher","first-page":"213","DOI":"10.1016\/j.jpdc.2018.03.001","volume":"118","author":"B Chaudhury","year":"2018","unstructured":"Chaudhury, B., Varma, A., Keswani, Y., Bhatnagar, Y., & Parikh, S. (2018). Let\u2019s HPC: A web-based platform to aid parallel, distributed and high performance computing education. Journal of Parallel Distributed Computing,118, 213\u2013232. https:\/\/doi.org\/10.1016\/j.jpdc.2018.03.001","journal-title":"J. Parallel Distrib Comput."},{"key":"12582_CR5","doi-asserted-by":"publisher","first-page":"381","DOI":"10.1016\/j.gpb.2019.09.003","volume":"17","author":"S Chen","year":"2019","unstructured":"Chen, S., He, Z., Han, X., He, X., Li, R., Zhu, H., Zhao, D., Dai, C., Zhang, Y., Lu, Z., Chi, X., & Niu, B. (2019). How big data and high-performance computing drive brain science. Genomics, Proteomics & Bioinformatics,17, 381\u2013392. https:\/\/doi.org\/10.1016\/j.gpb.2019.09.003","journal-title":"Genomics, Proteomics & Bioinformatics"},{"key":"12582_CR6","doi-asserted-by":"publisher","unstructured":"Cui, S., Wang, Y., Li, L., Peng, X., & Yalvac, B. (2016). Introducing high performance computing to undergraduate students. Computers in Education Journal, 16. https:\/\/doi.org\/10.18260\/p.25453.","DOI":"10.18260\/p.25453"},{"key":"12582_CR7","unstructured":"Ezell, S. J., & Atkinson, R. D. (2016). The vital importance of high- performance computing to US competitiveness (pp. 1\u201358). ITIF. https:\/\/itif.org\/publications\/2016\/04\/28\/vital-importance-high-performance-computing-us-competitiveness\/"},{"key":"12582_CR8","doi-asserted-by":"publisher","first-page":"240","DOI":"10.1007\/s11227-020-03360-5","volume":"77","author":"\u00c1 Fern\u00e1ndez","year":"2021","unstructured":"Fern\u00e1ndez, \u00c1., Fern\u00e1ndez, C., Miguel-D\u00e1vila, J. \u00c1., & Conde, M. (2021). Integrating supercomputing clusters into education: A case study in biotechnology. J. Supercomp.,77, 240\u2013253. https:\/\/doi.org\/10.1007\/s11227-020-03360-5","journal-title":"J. Supercomp."},{"key":"12582_CR9","doi-asserted-by":"publisher","first-page":"84","DOI":"10.1021\/acsbiomedchemau.1c00040","volume":"2","author":"C Fossum","year":"2022","unstructured":"Fossum, C., Laatsch, B., Lowater, H., Narkiewicz-Jodko, A., Lonzarich, L., Hati, S., & Bhattacharyya, S. (2022). Pre-Existing oxidative stress creates a docking-ready conformation of the SARS-CoV-2 receptor-binding domain. ACS Bio & Med Chem Au,2, 84\u201393. https:\/\/doi.org\/10.1021\/acsbiomedchemau.1c00040","journal-title":"ACS Bio & Med Chem Au"},{"key":"12582_CR10","doi-asserted-by":"publisher","unstructured":"Ghosh, A., Kunkel, W., Varghese, A., Ma, Y., Gomes, R., Bhattacharyya, S., Mohr, M., Doss, I., Hebert, J. (2023). Inter-institutional Resource Sharing in Undergraduate HPC Education: Interviews with University Administrators. In SIGCSE 2023 - Proceedings of the 54th ACM Technical Symposium on Computer Science Education.  https:\/\/doi.org\/10.1145\/3545945.3569784","DOI":"10.1145\/3545945.3569784"},{"key":"12582_CR11","doi-asserted-by":"publisher","first-page":"1853","DOI":"10.3390\/diagnostics12081853","volume":"12","author":"R Gomes","year":"2022","unstructured":"Gomes, R., Kamrowski, C., Langlois, J., Rozario, P., Dircks, I., Grottodden, K., Martinez, M., Tee, W. Z., Sargeant, K., LaFleur, C., & Haley, M. (2022a). A comprehensive review of machine learning used to combat COVID-19. Diagnostics,12, 1853. https:\/\/doi.org\/10.3390\/diagnostics12081853","journal-title":"Diagnostics"},{"key":"12582_CR12","doi-asserted-by":"publisher","DOI":"10.3390\/diagnostics12102475","volume":"12","author":"R Gomes","year":"2022","unstructured":"Gomes, R., Kamrowski, C., Mohan, P. D., Senor, C., Langlois, J., & Wildenberg, J. (2022b). Application of deep learning to IVC filter detection from CT Scans. Diagnostics.,12, 2475. https:\/\/doi.org\/10.3390\/diagnostics12102475","journal-title":"Diagnostics."},{"key":"12582_CR13","doi-asserted-by":"publisher","first-page":"140","DOI":"10.1002\/bmb.20942","volume":"44","author":"S Hati","year":"2016","unstructured":"Hati, S., & Bhattacharyya, S. (2016). Incorporating modeling and simulations in undergraduate biophysical chemistry course to promote understanding of structure-dynamics-function relationships in proteins. Biochemistry and Molecular Biology Education,44, 140\u2013159. https:\/\/doi.org\/10.1002\/bmb.20942","journal-title":"Biochemistry and Molecular Biology Education"},{"key":"12582_CR14","doi-asserted-by":"publisher","unstructured":"Heifetz, A.  (2024). Accelerating COVID-19 drug discovery with high-performance computing. Methods in Molecular Biology, 2716. https:\/\/doi.org\/10.1007\/978-1-0716-3449-3_19","DOI":"10.1007\/978-1-0716-3449-3_19"},{"key":"12582_CR15","unstructured":"Hunter, J. (2019). Pedagogy, leading from the middle and digital technologies: Potent forces for STEM education in Australian primary schools.\u00a0Australian Educational Leader, 41, 6\u201328."},{"key":"12582_CR16","doi-asserted-by":"publisher","DOI":"10.1016\/j.procs.2015.11.083","author":"A Karsakov","year":"2015","unstructured":"Karsakov, A., Bilyatdinova, A., & Bezgodov, A. (2015). Improving visualization courses in russian higher education in computational science and high performance computing. Procedia Computer Science. https:\/\/doi.org\/10.1016\/j.procs.2015.11.083","journal-title":"Procedia Computer Science"},{"key":"12582_CR17","doi-asserted-by":"publisher","DOI":"10.3389\/fmicb.2020.578600","volume":"11","author":"AE Kruchten","year":"2020","unstructured":"Kruchten, A. E. (2020). A curricular bioinformatics approach to teaching undergraduates to analyze metagenomic datasets using R. Frontiers in Microbiology,11, 578600. https:\/\/doi.org\/10.3389\/fmicb.2020.578600","journal-title":"Frontiers in Microbiology"},{"key":"12582_CR18","doi-asserted-by":"publisher","DOI":"10.3390\/FI12080135","volume":"12","author":"T Lynn","year":"2020","unstructured":"Lynn, T., Fox, G., Gourinovitch, A., & Rosati, P. (2020). Understanding the determinants and future challenges of cloud computing adoption for high performance computing. Future Internet.,12, 135. https:\/\/doi.org\/10.3390\/FI12080135","journal-title":"Future Internet."},{"key":"12582_CR19","doi-asserted-by":"publisher","first-page":"105","DOI":"10.1016\/j.jpdc.2017.01.015","volume":"105","author":"J Mullen","year":"2017","unstructured":"Mullen, J., Byun, C., Gadepally, V., Samsi, S., Reuther, A., & Kepner, J. (2017). Learning by doing, high performance computing education in the MOOC era. Journal of Parallel and Distributed Computing,105, 105\u2013117. https:\/\/doi.org\/10.1016\/j.jpdc.2017.01.015","journal-title":"Journal of Parallel and Distributed Computing"},{"key":"12582_CR20","doi-asserted-by":"publisher","first-page":"73","DOI":"10.1016\/j.jpdc.2017.01.019","volume":"105","author":"B Neelima","year":"2017","unstructured":"Neelima, B. (2017). High performance computing education in an Indian Engineering Institute. J. Parallel Distrib Comput.,105, 73\u201382. https:\/\/doi.org\/10.1016\/j.jpdc.2017.01.019","journal-title":"J. Parallel Distrib Comput."},{"key":"12582_CR21","doi-asserted-by":"publisher","unstructured":"No Author. (2021). Fighting COVID-19 with HPC. Nature Computational Science, 1, 769\u2013770.  https:\/\/doi.org\/10.1038\/s43588-021-00180-2","DOI":"10.1038\/s43588-021-00180-2"},{"key":"12582_CR22","doi-asserted-by":"publisher","first-page":"24","DOI":"10.22369\/issn.2153-4136\/10\/1\/5","volume":"10","author":"M Ponce","year":"2019","unstructured":"Ponce, M., Spence, E., van Zon, R., & Gruner, D. (2019). Scientific computing, high-performance computing and data science in higher education. Journal of Educational Computing Research,10, 24\u201331. https:\/\/doi.org\/10.22369\/issn.2153-4136\/10\/1\/5","journal-title":"Journal of Educational Computing Research"},{"key":"12582_CR23","doi-asserted-by":"publisher","first-page":"84","DOI":"10.1038\/s41524-022-00765-z","volume":"8","author":"EO Pyzer-Knapp","year":"2022","unstructured":"Pyzer-Knapp, E. O., Pitera, J. W., Staar, P. W. J., Takeda, S., Laino, T., Sanders, D. P., Sexton, J., Smith, J. R., & Curioni, A. (2022). Accelerating materials discovery using artificial intelligence, high performance computing and robotics. NPJ Computational Materials,8, 84. https:\/\/doi.org\/10.1038\/s41524-022-00765-z","journal-title":"NPJ Computational Materials"},{"key":"12582_CR24","doi-asserted-by":"publisher","unstructured":"Raj, R. K., Romanowski, C. J., Impagliazzo, J., Aly, S. G., Becker, B. A., Chen, J., Ghafoor, S., Giacaman, N., Gordon, S. I., Izu, C., Rahimi, S., Robson, M. P., Thota, N. (2020). High performance computing education: Current challenges and future directions. In ITiCSE-WGR\u201920, pp. 51\u201374.  https:\/\/doi.org\/10.1145\/3437800.3439203","DOI":"10.1145\/3437800.3439203"},{"key":"12582_CR25","doi-asserted-by":"publisher","first-page":"51","DOI":"10.54116\/jbdtp.v1i1.16","volume":"1","author":"J Samuel","year":"2022","unstructured":"Samuel, J., Brennan-Tonetta, M., Samuel, Y., Subedi, P., & Smith, J. (2022). Strategies for democratization of supercomputing: Availability, accessibility and usability of high performance computing for education and practice of big data analytics. Journal of Big Data Theoretical Practice,1, 51\u201365. https:\/\/doi.org\/10.54116\/jbdtp.v1i1.16","journal-title":"Journal of Big Data Theoretical Practice"},{"key":"12582_CR26","doi-asserted-by":"publisher","first-page":"e26274","DOI":"10.1002\/qua.26274","volume":"120","author":"GC Shields","year":"2020","unstructured":"Shields, G. C. (2020). Twenty years of exceptional success: The molecular education and research consortium in undergraduate computational chemistry (MERCURY). International Journal of Quantum Chemistry,120, e26274. https:\/\/doi.org\/10.1002\/qua.26274","journal-title":"International Journal of Quantum Chemistry"},{"key":"12582_CR27","doi-asserted-by":"publisher","first-page":"9","DOI":"10.1186\/s13174-017-0060-5","volume":"8","author":"J Shuja","year":"2017","unstructured":"Shuja, J., Ahmad, R. W., Gani, A., Abdalla Ahmed, A. I., Siddiqa, A., Nisar, K., Khan, S. U., & Zomaya, A. Y. (2017). Greening emerging IT technologies: Techniques and practices. Journal of Internet Services and Applications,8, 9. https:\/\/doi.org\/10.1186\/s13174-017-0060-5","journal-title":"Journal of Internet Services and Applications"},{"key":"12582_CR28","doi-asserted-by":"publisher","first-page":"644","DOI":"10.1007\/s10930-020-09935-8","volume":"39","author":"S Suhail","year":"2020","unstructured":"Suhail, S., Zajac, J., Fossum, C., Lowater, H., McCracken, C., Severson, N., Laatsch, B., Narkiewicz-Jodko, A., Johnson, B., Liebau, J., Bhattacharyya, S., & Hati, S. (2020). Role of Oxidative Stress on SARS-CoV (SARS) and SARS-CoV-2 (COVID-19) Infection: A review. Protein Journal.,39, 644\u2013656. https:\/\/doi.org\/10.1007\/s10930-020-09935-8","journal-title":"Protein Journal."},{"key":"12582_CR29","doi-asserted-by":"publisher","first-page":"20200003","DOI":"10.1098\/rsfs.2020.0003","volume":"10","author":"A Townsend-Nicholson","year":"2020","unstructured":"Townsend-Nicholson, A. (2020). Educating and engaging new communities of practice with high performance computing through the integration of teaching and research: Using technology to transform learning. Interface Focus,10, 20200003. https:\/\/doi.org\/10.1098\/rsfs.2020.0003","journal-title":"Interface Focus"},{"key":"12582_CR30","doi-asserted-by":"publisher","first-page":"035802","DOI":"10.1088\/1361-6404\/ab7027","volume":"41","author":"VS Vavilala","year":"2020","unstructured":"Vavilala, V. S. (2020). Combining high-performance hardware, cloud computing, and deep learning frameworks to accelerate physical simulations: Probing the Hopfield network. European Journal of Physics,41, 035802. https:\/\/doi.org\/10.1088\/1361-6404\/ab7027","journal-title":"European Journal of Physics"},{"key":"12582_CR31","doi-asserted-by":"publisher","DOI":"10.1007\/s10930-022-10065-6","author":"AJ Wozney","year":"2022","unstructured":"Wozney, A. J., Smith, M. A., Abdrabbo, M., Birch, C. M., Cicigoi, K. A., Dolan, C. C., Gerzema, A. E. L., Hansen, A., Henseler, E. J., LaBerge, B., Leavens, C. M., Le, C. N., Lindquist, A. C., Ludwig, R. K., O\u2019Reilly, M. G., Reynolds, J. H., Sherman, B. A., Sillman, H. W., Smith, M. A., \u2026 Bhattacharyya, S. (2022). Evolution of stronger SARS-CoV-2 variants as revealed through the lens of molecular dynamics simulations. Protein Journal.https:\/\/doi.org\/10.1007\/s10930-022-10065-6","journal-title":"Protein Journal."},{"key":"12582_CR32","doi-asserted-by":"publisher","first-page":"542","DOI":"10.1007\/s10930-020-09910-3","volume":"39","author":"J Zajac","year":"2020","unstructured":"Zajac, J., Anderson, H., Adams, L., Wangmo, D., Suhail, S., Almen, A., Berns, L., Coerber, B., Dawson, L., Hunger, A., Jehn, J., Johnson, J., Plack, N., Strasser, S., Williams, M., Bhattacharyya, S., & Hati, S. (2020). Effects of Distal Mutations on Prolyl-Adenylate Formation of Escherichia coli Prolyl-tRNA Synthetase. Protein Journal.,39, 542. https:\/\/doi.org\/10.1007\/s10930-020-09910-3","journal-title":"Protein Journal."}],"container-title":["Education and Information Technologies"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/link.springer.com\/content\/pdf\/10.1007\/s10639-024-12582-6.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/link.springer.com\/article\/10.1007\/s10639-024-12582-6\/fulltext.html","content-type":"text\/html","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/link.springer.com\/content\/pdf\/10.1007\/s10639-024-12582-6.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2024,10,25]],"date-time":"2024-10-25T13:09:35Z","timestamp":1729861775000},"score":1,"resource":{"primary":{"URL":"https:\/\/link.springer.com\/10.1007\/s10639-024-12582-6"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2024,3,9]]},"references-count":32,"journal-issue":{"issue":"14","published-print":{"date-parts":[[2024,10]]}},"alternative-id":["12582"],"URL":"https:\/\/doi.org\/10.1007\/s10639-024-12582-6","relation":{},"ISSN":["1360-2357","1573-7608"],"issn-type":[{"type":"print","value":"1360-2357"},{"type":"electronic","value":"1573-7608"}],"subject":[],"published":{"date-parts":[[2024,3,9]]},"assertion":[{"value":"3 October 2023","order":1,"name":"received","label":"Received","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"15 February 2024","order":2,"name":"accepted","label":"Accepted","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"9 March 2024","order":3,"name":"first_online","label":"First Online","group":{"name":"ArticleHistory","label":"Article History"}},{"order":1,"name":"Ethics","group":{"name":"EthicsHeading","label":"Declarations"}},{"value":"None.","order":2,"name":"Ethics","group":{"name":"EthicsHeading","label":"Conflict of interest"}}]}}