{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,4,9]],"date-time":"2025-04-09T01:58:48Z","timestamp":1744163928372,"version":"3.32.0"},"reference-count":44,"publisher":"Springer Science and Business Media LLC","issue":"1","license":[{"start":{"date-parts":[[2006,2,1]],"date-time":"2006-02-01T00:00:00Z","timestamp":1138752000000},"content-version":"tdm","delay-in-days":0,"URL":"http:\/\/www.springer.com\/tdm"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["Inf Syst Front"],"published-print":{"date-parts":[[2006,2]]},"DOI":"10.1007\/s10796-005-6102-8","type":"journal-article","created":{"date-parts":[[2006,2,19]],"date-time":"2006-02-19T09:03:10Z","timestamp":1140339790000},"page":"37-47","source":"Crossref","is-referenced-by-count":8,"title":["Predicting Protein-Protein Interactions by Association Mining"],"prefix":"10.1007","volume":"8","author":[{"name":"Max Kotlyar","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"name":"Igor Jurisica","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"297","reference":[{"key":"6102_CR1","doi-asserted-by":"crossref","first-page":"1146","DOI":"10.1101\/gr.1145203","volume":"13","author":"L Lu","year":"2003","unstructured":"Lu L, Arakaki AK, Lu H, Skolnick J. Multimeric threading-based prediction of protein\u2013protein interactions on a genomic scale: Application to the Saccharomyces Cerevisiae Proteome. Genome Research 2003;13:1146\u20131154.","journal-title":"Genome Research"},{"issue":"10","key":"6102_CR2","doi-asserted-by":"crossref","first-page":"529","DOI":"10.1016\/S0168-9525(02)02763-4","volume":"18","author":"AM Edwards","year":"2002","unstructured":"Edwards AM, Kus B, Jansen R, Greenbaum D, Greenblatt J, Gerstein M. Bridging structural biology and genomics: Assessing protein interaction data with known complexes. Trends Genet. 2002;18(10):529\u2013536.","journal-title":"Trends Genet."},{"issue":"5","key":"6102_CR3","doi-asserted-by":"crossref","first-page":"349","DOI":"10.1074\/mcp.M100037-MCP200","volume":"1","author":"CM Deane","year":"2002","unstructured":"Deane CM, Salwinski L, Xenarios I, Eisenberg D. Protein interactions: Two methods for assessment of the reliability of high throughput observations. Molecular & Cellular Proteomics 1.5 2002;1(5):349\u2013356.","journal-title":"Molecular & Cellular Proteomics 1.5"},{"key":"6102_CR4","doi-asserted-by":"crossref","first-page":"399","DOI":"10.1038\/nature750","volume":"417","author":"C von Mering","year":"2002","unstructured":"von Mering C, Krause R, Snel B, Cornell M, Oliver SG. Fields S, Bork P. Comparative assessment of large-scale data sets of protein\u2014protein interactions. Nature 2002;417:399\u2013403.","journal-title":"Nature"},{"key":"6102_CR5","doi-asserted-by":"crossref","unstructured":"Peri S, Navarro JD, Amanchy R, Kristiansen TZ Jonnalagadda CK, Surendraneth V, et al. Development of human protein reference database as an initial platform for approaching systems biology in humans. Genome Research 2003;13:2363\u20132371.","DOI":"10.1101\/gr.1680803"},{"issue":"14","key":"6102_CR6","doi-asserted-by":"crossref","first-page":"4157","DOI":"10.1093\/nar\/gkg466","volume":"31","author":"A Grigoriev","year":"2003","unstructured":"Grigoriev A. On the number of protein-protein interactions in the yeast proteome. Nucleic Acids Research 2003;31(14):4157\u20134161.","journal-title":"Nucleic Acids Research"},{"key":"6102_CR7","doi-asserted-by":"crossref","first-page":"623","DOI":"10.1038\/35001009","volume":"403","author":"P Uetz","year":"2000","unstructured":"Uetz P, Goit L, Cagney G, Mansfield TA, Judson RS, Knight JR, et al. A comprehensive analysis of protein\u2014protein interactions in Saccharomyces cerevisiae. Nature 2000;403:623\u2013627.","journal-title":"Nature"},{"key":"6102_CR8","doi-asserted-by":"crossref","first-page":"4569","DOI":"10.1073\/pnas.061034498","volume":"98","author":"T Ito","year":"2001","unstructured":"Ito T, Chiba T, Ozawa R, Yoshida M, Hattori M, Sakaki Y. A comprehensive two-hybrid analysis to explore the yeast protein interactome. Proc Natl Acad Sci USA 2001;98:4569\u20134574.","journal-title":"Proc Natl Acad Sci USA"},{"key":"6102_CR9","doi-asserted-by":"crossref","first-page":"141","DOI":"10.1038\/415141a","volume":"415","author":"AC Gavin","year":"2002","unstructured":"Gavin AC, Bosche M, Krause R, Grandi P, Marzioch M, Bauer A, et al. Functional organization of the yeast proteome by systematic analysis of protein complexes. Nature 2002;415:141\u2013147.","journal-title":"Nature"},{"key":"6102_CR10","doi-asserted-by":"crossref","first-page":"180","DOI":"10.1038\/415180a","volume":"415","author":"Y Ho","year":"2002","unstructured":"Ho Y, Gruhler A, Heilbut A, Bader GD, Moore L, Adams SL, et al. Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry. Nature 2002;415:180\u2013183.","journal-title":"Nature"},{"key":"6102_CR11","doi-asserted-by":"crossref","first-page":"2364","DOI":"10.1126\/science.1065810","volume":"294","author":"AH Tong","year":"2001","unstructured":"Tong AH, Evangelista M, Parsons AB, Xu H, Bader GD, Page N, et al. Systematic genetic analysis with ordered arrays of yeast deletion mutants. Science 2001;294:2364\u20132368.","journal-title":"Science"},{"key":"6102_CR12","doi-asserted-by":"crossref","unstructured":"Deng M, Sun F, Chen T. Assessment of the reliability of protein-protein interactions and protein function prediction. Pac Symp Biocomput. 2003:140\u2013151.","DOI":"10.1142\/9789812776303_0014"},{"key":"6102_CR13","doi-asserted-by":"crossref","first-page":"368","DOI":"10.1016\/S0959-440X(02)00333-0","volume":"12","author":"A Valencia","year":"2002","unstructured":"Valencia A, Pazos F. Computational methods for the prediction of protein interactions. Current Opinion in Structural Biology 2002;12:368\u2013373.","journal-title":"Current Opinion in Structural Biology"},{"key":"6102_CR14","doi-asserted-by":"crossref","first-page":"919","DOI":"10.1016\/S0022-2836(03)00239-0","volume":"327","author":"E Sprinzak","year":"2003","unstructured":"Sprinzak E, Sattath S, Margalit H. How reliable are experimental protein-protein interaction data? J. Mol. Biol. 2003;327:919\u2013923.","journal-title":"J. Mol. Biol."},{"issue":"1","key":"6102_CR15","doi-asserted-by":"crossref","first-page":"251","DOI":"10.1093\/nar\/gkg079","volume":"31","author":"SK Ng","year":"2003","unstructured":"Ng SK, Zhang Z, Tan SH, Lin K. Interdom: A database of putative interacting protein domains for validating predicted protein interactions and complexes. Nucleic Acids Res. 2003;31(1):251\u2013254.","journal-title":"Nucleic Acids Res."},{"issue":"8","key":"6102_CR16","doi-asserted-by":"crossref","first-page":"4372","DOI":"10.1073\/pnas.0735871100","volume":"100","author":"DS Goldberg","year":"2003","unstructured":"Goldberg DS, Roth FP. Assessing experimentally derived interactions in a small world. Proc Natl Acad Sci USA 2003;100(8):4372\u20134376.","journal-title":"Proc Natl Acad Sci USA"},{"issue":"5644","key":"6102_CR17","doi-asserted-by":"crossref","first-page":"449","DOI":"10.1126\/science.1087361","volume":"302","author":"R Jansen","year":"2003","unstructured":"Jansen R, Yu H, Greenbaum D, Kluger Y, Krogan NJ, Chung S, et al. A Bayesian networks approach for predicting protein-protein interactions from genomic data. Science 2003;302(5644):449\u2013453.","journal-title":"Science"},{"issue":"1","key":"6102_CR18","doi-asserted-by":"crossref","first-page":"38","DOI":"10.1186\/1471-2105-5-38","volume":"5","author":"LV Zhang","year":"2004","unstructured":"Zhang LV, Wong SL, King OD, Roth FP. Predicting co-complexed protein pairs using genomic and proteomic data integration. BMC Bioinformatics 2004;5(1):38.","journal-title":"BMC Bioinformatics"},{"key":"6102_CR19","unstructured":"Agrawal R, Srikant R. Fast Algorithms for Mining Association Rules. Proc. 20 th Int. Conf. Very Large Data Bases VLDB 1994;487\u2013499."},{"issue":"1","key":"6102_CR20","doi-asserted-by":"crossref","first-page":"25","DOI":"10.1080\/14639230010028786","volume":"26","author":"S Doddi","year":"2001","unstructured":"Doddi S, Marathe A, Ravi SS, Torney DC. Discovery of association rules in medical data. Med. Inform. Internet. Med. 2001;26(1):25\u201333.","journal-title":"Med. Inform. Internet. Med."},{"issue":"Pt 2","key":"6102_CR21","first-page":"1399","volume":"10","author":"S Stilou","year":"2001","unstructured":"Stilou S, Bamidis PD, Maglaveras N, Pappas C. Mining association rules from clinical databases: An intelligent diagnostic process in healthcare. Medinfo. 10(Pt 2) 2001;1399\u20131403.","journal-title":"Medinfo"},{"key":"6102_CR22","unstructured":"Satou K, Shibayama G, Ono T, Yamamura Y, Furuichi E, Kuhara S, et al. Finding association rules on heterogeneous genome data. Proc. of the Pacific Symposium on Biocomputing 1997:397\u2013408."},{"issue":"1","key":"6102_CR23","doi-asserted-by":"crossref","first-page":"79","DOI":"10.1093\/bioinformatics\/19.1.79","volume":"19","author":"C Creighton","year":"2003","unstructured":"Creighton C, Hanash S. Mining gene expression databases for association rules. Bioinformatics 2003;19(1):79\u201386.","journal-title":"Bioinformatics"},{"issue":"5","key":"6102_CR24","doi-asserted-by":"crossref","first-page":"705","DOI":"10.1093\/bioinformatics\/18.5.705","volume":"18","author":"T Oyama","year":"2002","unstructured":"Oyama T, Kitano K, Satou K, Ito T. Extraction of knowledge on protein-protein interaction by association rule discovery. Bioinformatics 2002;18(5):705\u2013714.","journal-title":"Bioinformatics"},{"key":"6102_CR25","unstructured":"Liu B, Hsu W, Ma Y. Integrating Classification and Association Rule Mining. Knowledge Discovery and Data Mining 1998:80\u201386."},{"key":"6102_CR26","unstructured":"Li W, Han J, Pie J. CMAR: Accurate and efficient classification based on multiple class-association rules. Proceedings of the 2001 IEEE International Conference on Data Mining 2001:369\u2013376."},{"key":"6102_CR27","doi-asserted-by":"crossref","unstructured":"Han J, Pei J, Yin Y. Mining frequent patterns without candidate generation. Proceedings of the 2000 ACM SIGMOD International Conference on Management of Data 2000;29(2):1\u201312.","DOI":"10.1145\/342009.335372"},{"key":"6102_CR28","unstructured":"Alterovitz G, Xiang M, Kohane I, Ramoni M. Protein Network Topology Metric Conservation: From Yeast to Human. RECOMB 2005 Poster 2005."},{"issue":"2","key":"6102_CR29","doi-asserted-by":"crossref","first-page":"323","DOI":"10.1091\/mbc.12.2.323","volume":"12","author":"HC Causton","year":"2001","unstructured":"Causton HC, Ren B, Koh SS, Harbison CT, Kanin E, Jennings EG, et al. Remodeling of yeast genome expression in response to environmental changes. Mol Biol Cell 2001;12(2):323\u2013327.","journal-title":"Mol Biol Cell"},{"issue":"12","key":"6102_CR30","doi-asserted-by":"crossref","first-page":"3273","DOI":"10.1091\/mbc.9.12.3273","volume":"9","author":"PT Spellman","year":"1998","unstructured":"Spellman PT, Sherlock G, Zhang MQ, Iyer VR, Anders K, Eisen MB, et al. Comprehensive identification of cell cycle-regulated genes of the yeast saccharomyces cerevisiae by microarray hybridization. Mol Biol Cell 1998;9(12):3273\u20133297.","journal-title":"Mol Biol Cell"},{"issue":"1","key":"6102_CR31","doi-asserted-by":"crossref","first-page":"65","DOI":"10.1016\/S1097-2765(00)80114-8","volume":"2","author":"Cho RJ","year":"1998","unstructured":"Cho RJ, Campbell MJ, Winzeler EA, Steinmetz L, Conway A, Wodicka L, et al. A genome-wide transcriptional analysis of the mitotic cell cycle. Mol Cell 1998;2(1):65\u201373.","journal-title":"Mol Cell"},{"issue":"1","key":"6102_CR32","doi-asserted-by":"crossref","first-page":"109","DOI":"10.1016\/S0092-8674(00)00015-5","volume":"102","author":"TR Hughes","year":"2000","unstructured":"Hughes TR, Marton MJ, Jones AR, Roberts CJ, Stoughton R, Armour CD, et al. Functional discovery via a compendium of expression profiles. Cell 2000;102(1):109\u2013126.","journal-title":"Cell"},{"key":"6102_CR33","doi-asserted-by":"crossref","first-page":"25","DOI":"10.1038\/75556","volume":"25","author":"M Ashburner","year":"2000","unstructured":"Ashburner M, Ball CA, Blake JA, Botstein D, Butler H, Cherry JM, et al. Gene Ontology: Tool for the unification of biology. The Gene Ontology Consortium. Nature Genet. 2000;25:25\u201329.","journal-title":"Nature Genet."},{"issue":"16","key":"6102_CR34","doi-asserted-by":"crossref","first-page":"6062","DOI":"10.1073\/pnas.0400782101","volume":"101","author":"AI Su","year":"2004","unstructured":"Su AI, Wiltshire T, Batalov S, Lapp H, Ching KA, Block D, et al. A gene atlas of the mouse and human protein-encoding transcriptomes. Proc Natl Acad Sci USA 2004;101(16):6062\u20136067.","journal-title":"Proc Natl Acad Sci USA"},{"issue":"1","key":"6102_CR35","doi-asserted-by":"crossref","first-page":"31","DOI":"10.1093\/nar\/30.1.31","volume":"30","author":"HW Mewes","year":"2000","unstructured":"Mewes HW, Frishman D, Guldener U, Mannhaupt G, Mayer K, Mokrejs M, et al. MIPS: A database for genomes and protein sequences. Nucleic Acids Res. 2000;30(1):31\u201334.","journal-title":"Nucleic Acids Res."},{"issue":"1","key":"6102_CR36","doi-asserted-by":"crossref","first-page":"303","DOI":"10.1093\/nar\/30.1.303","volume":"30","author":"I Xenarios","year":"2002","unstructured":"Xenarios I, Fernandez E, Salwinski L, Duan XJ, Thompson MJ, Marcotte EM, Eisenberg D. DIP, the database of interacting proteins: A research tool for studying cellular networks of protein interactions. Nucleic Acids Res., 2002;30(1):303\u2013305.","journal-title":"Nucleic Acids Res."},{"key":"6102_CR37","unstructured":"Breitkreutz BJ, Stark C, Tyers M. The GRID: The general repository for interaction datasets. Genome Biol. 2002;3(12), PREPRINT0013."},{"key":"6102_CR38","doi-asserted-by":"crossref","first-page":"1133","DOI":"10.1016\/S1097-2765(02)00531-2","volume":"9","author":"P Kemmeren","year":"2002","unstructured":"Kemmeren P, van Berkum NL, Vilo J, Bijma T, Donders R, Brazma A, et al. Protein interaction verification and functional annotation by integrated analysis of genome-scale data. Mol. Cell 2002;9:1133\u20131143.","journal-title":"Mol. Cell"},{"issue":"1","key":"6102_CR39","doi-asserted-by":"crossref","first-page":"69","DOI":"10.1093\/nar\/30.1.69","volume":"30","author":"SS Dwight","year":"2002","unstructured":"Dwight SS, Harris MA, Dolinski K, Ball CA, Binkley G, Christie KR, et al. Saccharomyces Genome Database (SGD) provides secondary gene annotation using the Gene Ontology (GO). Nucleic Acids Res. 2002;30(1):69\u201372.","journal-title":"Nucleic Acids Res."},{"key":"6102_CR40","doi-asserted-by":"crossref","first-page":"3093","DOI":"10.1093\/nar\/21.13.3093","volume":"21","author":"A Bairoch","year":"1993","unstructured":"Bairoch A, Boeckman, B. The SWISS-PROT protein sequence data bank, recent developments. Nucleic Acids Res. 1993;21:3093\u20133096.","journal-title":"Nucleic Acids Res."},{"key":"6102_CR41","unstructured":"Zadrozny B, Elkan C. Obtaining calibrated probability estimates from decision trees and na\u00efve Bayesian classifiers. Proceedings of the Eighteenth International Conference on Machine Learning 2001:609\u2013616."},{"key":"6102_CR42","doi-asserted-by":"crossref","unstructured":"Zadrozny B, Elkan C. Transforming classifier scores into accurate multiclass probability estimates. Proceedings of the Eighth ACM SIGKDD International Conference on Knowledge Discovery and Data Mining 2002:694\u2013699.","DOI":"10.1145\/775047.775151"},{"issue":"44","key":"6102_CR43","doi-asserted-by":"crossref","first-page":"15682","DOI":"10.1073\/pnas.0406614101","volume":"101","author":"SL Wong","year":"2004","unstructured":"Wong SL, Zhang LV, Tong AH, Li Z, Goldberg DS, King OD, et al. Combining biological networks to predict genetic interactions. Proc Natl Acad Sci USA 2004;101(44):15682\u201315687.","journal-title":"Proc Natl Acad Sci USA"},{"key":"6102_CR44","doi-asserted-by":"crossref","first-page":"455","DOI":"10.1093\/bioinformatics\/17.5.455","volume":"17","author":"JR Bock","year":"2001","unstructured":"Bock JR, Gough DA. Predicting protein-protein interactions from primary structure. Bioinformatics 2001;17:455\u2013460.","journal-title":"Bioinformatics"}],"container-title":["Information Systems Frontiers"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/s10796-005-6102-8.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/article\/10.1007\/s10796-005-6102-8\/fulltext.html","content-type":"text\/html","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/s10796-005-6102-8","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2025,1,7]],"date-time":"2025-01-07T20:20:50Z","timestamp":1736281250000},"score":1,"resource":{"primary":{"URL":"http:\/\/link.springer.com\/10.1007\/s10796-005-6102-8"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2006,2]]},"references-count":44,"journal-issue":{"issue":"1","published-print":{"date-parts":[[2006,2]]}},"alternative-id":["6102"],"URL":"https:\/\/doi.org\/10.1007\/s10796-005-6102-8","relation":{},"ISSN":["1387-3326","1572-9419"],"issn-type":[{"type":"print","value":"1387-3326"},{"type":"electronic","value":"1572-9419"}],"subject":[],"published":{"date-parts":[[2006,2]]}}}