{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,7,11]],"date-time":"2026-07-11T15:17:27Z","timestamp":1783783047152,"version":"3.55.0"},"reference-count":28,"publisher":"Springer Science and Business Media LLC","issue":"4","license":[{"start":{"date-parts":[[2011,5,11]],"date-time":"2011-05-11T00:00:00Z","timestamp":1305072000000},"content-version":"tdm","delay-in-days":0,"URL":"http:\/\/www.springer.com\/tdm"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["J Med Syst"],"published-print":{"date-parts":[[2012,8]]},"DOI":"10.1007\/s10916-011-9731-0","type":"journal-article","created":{"date-parts":[[2011,5,10]],"date-time":"2011-05-10T06:11:33Z","timestamp":1305007893000},"page":"2587-2597","source":"Crossref","is-referenced-by-count":4,"title":["Integrating Human Genome Database into Electronic Health Record with Sequence Alignment and Compression Mechanism"],"prefix":"10.1007","volume":"36","author":[{"given":"Wei-Hsin","family":"Chen","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Yu-Wen","family":"Lu","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Feipei","family":"Lai","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Yin-Hsiu","family":"Chien","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Wuh-Liang","family":"Hwu","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"297","published-online":{"date-parts":[[2011,5,11]]},"reference":[{"key":"9731_CR1","unstructured":"Blastall. http:\/\/www.ncbi.nlm.nih.gov\/staff\/tao\/URLAPI\/blastall\/ ."},{"key":"9731_CR2","unstructured":"DNA sequencing. http:\/\/genomics.org\/index.php\/DNA_sequencing ."},{"issue":"5596","key":"9731_CR3","doi-asserted-by":"crossref","first-page":"687","DOI":"10.1038\/265687a0","volume":"265","author":"F Sanger","year":"1977","unstructured":"Sanger, F., Air, G. M., Barrell, B. G., Brown, N. L., Coulson, A. R., Fiddes, C. A., Hutchison, C. A., Slocombe, P. M., and Smith, M., Nucleotide sequence of bacteriophage phi X174 DNA. Nature 265(5596):687\u2013695, 1977.","journal-title":"Nature"},{"issue":"10","key":"9731_CR4","doi-asserted-by":"crossref","first-page":"1135","DOI":"10.1038\/nbt1486","volume":"26","author":"J Shendure","year":"2008","unstructured":"Shendure, J., and Ji, H., Next-generation DNA sequencing. Nat. Biotechnol. 26(10):1135\u20131145, 2008.","journal-title":"Nat. Biotechnol."},{"key":"9731_CR5","unstructured":"Human Genome Project HomePage. http:\/\/hgph.com\/index.htm ."},{"key":"9731_CR6","unstructured":"Human Genome Project Information. http:\/\/www.ornl.gov\/sci\/techresources\/Human_Genome\/home.shtml ."},{"key":"9731_CR7","doi-asserted-by":"crossref","first-page":"20","DOI":"10.1093\/nar\/gkh435","volume":"32","author":"S McGinnis","year":"2004","unstructured":"McGinnis, S., and Madden, T. L., BLAST: at the core of a powerful and diverse set of sequence analysis tools. Nucleic Acids Res. 32:20\u201325, 2004.","journal-title":"Nucleic Acids Res."},{"issue":"1","key":"9731_CR8","doi-asserted-by":"crossref","first-page":"12","DOI":"10.1093\/nar\/27.1.12","volume":"27","author":"DA Benson","year":"1999","unstructured":"Benson, D. A., Boguski, M. S., Lipman, D. J., Ostell, J., Ouellette, B. F., Rapp, B. A., and Wheeler, D. L., GenBank. Nucleic Acids Res. 27(1):12\u201317, 1999.","journal-title":"Nucleic Acids Res."},{"issue":"1","key":"9731_CR9","doi-asserted-by":"crossref","first-page":"38","DOI":"10.1093\/nar\/30.1.38","volume":"30","author":"T Hubbard","year":"2002","unstructured":"Hubbard, T., Barker, D., Birney, E., Cameron, G., Chen, Y., Clark, L., Cox, T., Cuff, J., Curwen, V., Down, T., Durbin, R., Eyras, E., Gilbert, J., Hammond, M., Huminiecki, L., Kasprzyk, A., Lehvaslaiho, H., Lijnzaad, P., Melsopp, C., Mongin, E., Pettett, R., Pococok, M., Potter, S., Rust, A., Schmidt, E., Searles, S., Slater, G., Smith, J., Spooner, W., Stabenau, A., Stalker, J., Stupka, E., Ureta-Vidal, A., Vastrk, I., and Clamp, M., The Ensembl genome database project. Nucleic Acids Res. 30(1):38\u201341, 2002.","journal-title":"Nucleic Acids Res."},{"issue":"1","key":"9731_CR10","doi-asserted-by":"crossref","first-page":"24","DOI":"10.1093\/nar\/28.1.24","volume":"28","author":"Y Tateno","year":"2000","unstructured":"Tateno, Y., Miyazaki, S., Ota, M., Sugawara, M., and Gojobori, T., DNA Data Bank of Japan (DDBJ) in collaboration with mass sequencing teams. Nucleic Acids Res. 28(1):24\u201326, 2000.","journal-title":"Nucleic Acids Res."},{"issue":"1","key":"9731_CR11","doi-asserted-by":"crossref","first-page":"193","DOI":"10.1093\/nar\/gkg047","volume":"31","author":"JA Blake","year":"2003","unstructured":"Blake, J. A., Richardson, J. E., Bult, C. J., Kadin, J. A., and Eppig, J. P., MGD: the Mouse Genome Database. Nucleic Acids Res. 31(1):193\u2013195, 2003.","journal-title":"Nucleic Acids Res."},{"key":"9731_CR12","doi-asserted-by":"crossref","first-page":"762","DOI":"10.1093\/nar\/gkn872","volume":"37","author":"Y Maruyama","year":"2009","unstructured":"Maruyama, Y., Wakamatsu, A., Kawamura, Y., Kimura, K., Yamamoto, J., Nishikawa, T., Kisu, Y., Sugano, S., Goshima, N., Isogai, T., and Nomura, N., Human Gene and Protein Database (HGPD): a novel database presenting a large quantity of experiment-based results in human proteomics. Nucleic Acids Res. 37:762\u2013766, 2009.","journal-title":"Nucleic Acids Res."},{"key":"9731_CR13","doi-asserted-by":"crossref","first-page":"61","DOI":"10.1093\/nar\/gkl842","volume":"35","author":"KD Pruitt","year":"2006","unstructured":"Pruitt, K. D., Tatusova, T., and Maglott, D. R., NCBI reference sequences (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins. Nucleic Acids Res. 35:61\u201365, 2006.","journal-title":"Nucleic Acids Res."},{"key":"9731_CR14","unstructured":"NCBI Reference Sequence (RefSeq). http:\/\/www.ncbi.nlm.nih.gov\/RefSeq\/ ."},{"key":"9731_CR15","unstructured":"BLAST Program Selection Guide. http:\/\/blast.ncbi.nlm.nih.gov\/blast\/producttable.shtml ."},{"key":"9731_CR16","unstructured":"MegaBLAST Search. http:\/\/www.ncbi.nlm.nih.gov\/blast\/megablast.shtml ."},{"issue":"3","key":"9731_CR17","doi-asserted-by":"crossref","first-page":"403","DOI":"10.1016\/S0022-2836(05)80360-2","volume":"215","author":"SF Altschul","year":"1990","unstructured":"Altschul, S. F., Gish, W., Miller, W., Myers, E. W., and Lipmen, D. J., Basic local alignment search tool. J. Mol. Biol. 215(3):403\u2013410, 1990.","journal-title":"J. Mol. Biol."},{"key":"9731_CR18","doi-asserted-by":"crossref","unstructured":"Grumbach, S. and Tahi, F., Compression of DNA sequences. Data Compression Conference. (pp. 340\u2013350). IEEE Computer Society Press, 1993.","DOI":"10.1109\/DCC.1993.253115"},{"key":"9731_CR19","doi-asserted-by":"crossref","unstructured":"Chen, X., Kwong, S., and Li, M., A compression algorithm for DNA sequences and its applications in genome comparison. The 10th Workshop on Genome Informatics. (pp. 51\u201361). Genome Informatics Press, 1999","DOI":"10.1145\/332306.332352"},{"issue":"12","key":"9731_CR20","doi-asserted-by":"crossref","first-page":"1696","DOI":"10.1093\/bioinformatics\/18.12.1696","volume":"18","author":"X Chen","year":"2002","unstructured":"Chen, X., Li, M., Ma, B., and Tromp, J., DNACompress: fast and effective DNA sequence compression. Bioinformatics 18(12):1696\u20131698, 2002.","journal-title":"Bioinformatics"},{"issue":"3","key":"9731_CR21","doi-asserted-by":"crossref","first-page":"440","DOI":"10.1093\/bioinformatics\/18.3.440","volume":"18","author":"B Ma","year":"2002","unstructured":"Ma, B., Tromp, J., and Li, M., PatternHunter: faster and more sensitive homology search. Bioinformatics 18(3):440\u2013445, 2002.","journal-title":"Bioinformatics"},{"key":"9731_CR22","doi-asserted-by":"crossref","first-page":"190","DOI":"10.1007\/11496656_17","volume":"3537","author":"B Behzadi","year":"2005","unstructured":"Behzadi, B., and Fessant, F. L., DNA compression challenge revisited: a dynamic programming approach. Lect. Notes Comput. Sci. 3537:190\u2013200, 2005.","journal-title":"Lect. Notes Comput. Sci."},{"issue":"1\u20134","key":"9731_CR23","doi-asserted-by":"crossref","first-page":"462","DOI":"10.1159\/000084979","volume":"110","author":"J Jurka","year":"2005","unstructured":"Jurka, J., Kapitonov, V. V., Pavlice, A., Klonowski, P., Kohany, O., and Walichiewicz, J., Repbase update, a database of eukaryotic repetitive elements. Cytogenet. Genome Res. 110(1\u20134):462\u2013467, 2005.","journal-title":"Cytogenet. Genome Res."},{"key":"9731_CR24","unstructured":"FASTA format description. http:\/\/www.ncbi.nlm.nih.gov\/blast\/fasta.shtml ."},{"issue":"2","key":"9731_CR25","doi-asserted-by":"crossref","first-page":"238","DOI":"10.1109\/TIT.1987.1057284","volume":"33","author":"A Apostolico","year":"1987","unstructured":"Apostolico, A., and Fraenkel, A., Robust transmission of unbounded strings using Fibonacci representations. IEEE Trans. Inf. Theory 33(2):238\u2013245, 1987.","journal-title":"IEEE Trans. Inf. Theory"},{"issue":"2","key":"9731_CR26","doi-asserted-by":"crossref","first-page":"194","DOI":"10.1109\/TIT.1975.1055349","volume":"21","author":"P Elias","year":"1975","unstructured":"Elias, P., Universal codeword sets and representations of the integers. IEEE Trans. Inf. Theory 21(2):194\u2013203, 1975.","journal-title":"IEEE Trans. Inf. Theory"},{"issue":"5","key":"9731_CR27","doi-asserted-by":"crossref","first-page":"713","DOI":"10.1093\/bioinformatics\/btn025","volume":"24","author":"R Li","year":"2008","unstructured":"Li, R., Li, Y., Kristiansen, K., and Wang, J., SOAP: short oligonucleotide alignment program. Bioinformatics 24(5):713\u2013714, 2008.","journal-title":"Bioinformatics"},{"key":"9731_CR28","unstructured":"Genetic Information Nondiscrimination Act of 2008 (Public Law 110\u2013233)."}],"container-title":["Journal of Medical Systems"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/s10916-011-9731-0.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/article\/10.1007\/s10916-011-9731-0\/fulltext.html","content-type":"text\/html","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/s10916-011-9731-0","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2025,3,5]],"date-time":"2025-03-05T13:22:12Z","timestamp":1741180932000},"score":1,"resource":{"primary":{"URL":"http:\/\/link.springer.com\/10.1007\/s10916-011-9731-0"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2011,5,11]]},"references-count":28,"journal-issue":{"issue":"4","published-print":{"date-parts":[[2012,8]]}},"alternative-id":["9731"],"URL":"https:\/\/doi.org\/10.1007\/s10916-011-9731-0","relation":{},"ISSN":["0148-5598","1573-689X"],"issn-type":[{"value":"0148-5598","type":"print"},{"value":"1573-689X","type":"electronic"}],"subject":[],"published":{"date-parts":[[2011,5,11]]}}}