{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2024,11,3]],"date-time":"2024-11-03T02:10:31Z","timestamp":1730599831163,"version":"3.28.0"},"reference-count":34,"publisher":"Springer Science and Business Media LLC","issue":"4","license":[{"start":{"date-parts":[[2004,12,1]],"date-time":"2004-12-01T00:00:00Z","timestamp":1101859200000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.springernature.com\/gp\/researchers\/text-and-data-mining"},{"start":{"date-parts":[[2004,12,1]],"date-time":"2004-12-01T00:00:00Z","timestamp":1101859200000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/www.springernature.com\/gp\/researchers\/text-and-data-mining"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["Nat Comput"],"published-print":{"date-parts":[[2004,12]]},"DOI":"10.1007\/s11047-004-2642-y","type":"journal-article","created":{"date-parts":[[2005,2,8]],"date-time":"2005-02-08T17:15:49Z","timestamp":1107882949000},"page":"461-477","source":"Crossref","is-referenced-by-count":16,"title":["Virtual test tubes"],"prefix":"10.1007","volume":"3","author":[{"given":"Max H","family":"Garzon","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Derrel R.","family":"Blain","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Andrew J.","family":"Neel","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"297","reference":[{"key":"2642_CR1","doi-asserted-by":"crossref","first-page":"1021","DOI":"10.1126\/science.7973651","volume":"266","author":"LM Adleman","year":"1994","journal-title":"Science"},{"key":"2642_CR2","doi-asserted-by":"crossref","first-page":"583","DOI":"10.1126\/science.7725109","volume":"268","author":"E Baum","year":"1995","journal-title":"Science"},{"key":"2642_CR3","doi-asserted-by":"crossref","unstructured":"Blain D, Garzon M, Shin SY, Zhang BT, Kashiwamura S, Yamamoto M, Kameda K and Ohuchi A (2004) Development, evaluation and benchmarking of simulation software for biomolecular computing. This issue","DOI":"10.1007\/s11047-004-2644-9"},{"key":"2642_CR4","doi-asserted-by":"crossref","unstructured":"Braich RS, Johnson C, Rothemund PWK, Hwang D, Chelyapov N and Adleman LA (2000) Solution to a satisfiability problem on a gel-based DNA computer. In: Lecture Notes in Computer Science LNCS, Vol. 2054, pp. 27\u201342, Springer-Verlag","DOI":"10.1007\/3-540-44992-2_3"},{"volume-title":"Biophysical Chemistry, Part III: The Behavior of Biological Macromolecules","year":"1980","author":"C Cantor","key":"2642_CR5"},{"key":"2642_CR6","unstructured":"Chen J and Reif J eds (2003) Proceedings of 9th international workshop on DNA-based computers DNA 2003 (Revised Papers). In: Lecture Notes in Computer Science LNCS, Vol. 2943, Springer-Verlag"},{"key":"2642_CR7","unstructured":"Chen J, Deaton R, Garzon M, Kim JW, Wood D, Bi H, Carpenter D and Wang YZ (2004) Characterization of non-crosshybridizing DNA oligonucleotides manufactured in vitro. In: (Ferreti et al., 2003), 132\u2013141"},{"key":"2642_CR8","doi-asserted-by":"crossref","unstructured":"Deaton R, Chen J, Bi H, Garzon M, Rubin H and Wood D, (2002) A PCR-based protocol for in vitro selection of non-crosshybridizing oligonucleotides. In: (Chen and Reif, 2003), 105\u2013114","DOI":"10.1007\/3-540-36440-4_17"},{"key":"2642_CR9","first-page":"167","volume-title":"Monte Carlo and Quasi-Monte Carlo Methods.","author":"L Deng","year":"2004"},{"key":"2642_CR10","first-page":"49","volume-title":"Investigations on the theory of the Brownian movement","author":"A Einstein","year":"1956"},{"key":"2642_CR11","unstructured":"Ferreti C, Mauri G and Zandron C eds (2004) Proceedings 10th international workshop on DNA-based computers DNA 2004. In: Lecture Notes in Computer Science LNCS, Springer-Verlag, in press"},{"key":"2642_CR12","unstructured":"Fogel G, and Garry Greenwood et al. (eds) (2004) Proceedings of the IEEE Conference on Evolutionary Computation CEC04. Computer Society Press"},{"key":"2642_CR13","doi-asserted-by":"crossref","unstructured":"Garzon M and Oehmen C (2001) Biomolecular computation in virtual test tubes. Proceedings of 7th International workshop on DNA-based computers DNA 2002 (Revised Papers). In: Lecture Notes in Computer Science LNCS, Vol. 2340, pp. 117\u2013128, Springer-Verlag","DOI":"10.1007\/3-540-48017-X_11"},{"key":"2642_CR14","doi-asserted-by":"crossref","DOI":"10.1007\/978-3-642-77905-3","volume-title":"Models of Massive Parallelism (Analysis of Cellular Automata and Neural Networks)","author":"M Garzon","year":"1995"},{"key":"2642_CR15","doi-asserted-by":"crossref","unstructured":"Garzon M, Bobba K and Hyde B (2004) Digital information encoding on DNA. In: Lecture Notes in Computer Science, Vol. 2590, pp. 152\u2013166, Springer-Verlag","DOI":"10.1007\/978-3-540-24635-0_11"},{"key":"2642_CR16","unstructured":"Garzon M, Blain D, Bobba K, Neel A and West M (2003a) Self-Assembly of DNA-like structures In-Silico. In (Garzon, 2003), 185\u2013200"},{"key":"2642_CR17","doi-asserted-by":"crossref","unstructured":"Garzon M, Drumwright E, Deaton R and Renault D (2000) Virtual test tubes: a new methodology for computing. In Proceedings of 7th International Symposium on String Processing and Information Retrieval. pp. 116\u2013121, A Coru\u00f1a, Spain. IEEE Computer Society Pzzress","DOI":"10.1109\/SPIRE.2000.878186"},{"key":"2642_CR18","unstructured":"Garzon M, Deaton R, Rose J, and Franceschetti D (1999) Soft molecular computing. In: Proceedings of the 5th workshop, MIT, Vol. 54, pp. 89\u201398, DIMACS Series American Mathematical Society"},{"volume-title":"Biomolecular Machines and Artificial Evolution","year":"2003","key":"2642_CR19"},{"key":"2642_CR20","unstructured":"Garzon M, Neathery P, Deaton R, Murphy R, Franceschetti D and Stevens S Jr. (1997) A new metric for DNA computing. In: (Koza et al., 1997), 472\u2013478"},{"key":"2642_CR21","doi-asserted-by":"crossref","unstructured":"Garzon M, Neel A and Bobba K (2003b) Efficiency and reliability of semantic retrieval in DNA-based memories. In: (Chen and Reif, 2003), 157\u2013169","DOI":"10.1007\/978-3-540-24628-2_15"},{"key":"2642_CR22","first-page":"51","volume-title":"Random Number Generation and Monte Carlo Methods","author":"E Gentle","year":"2003"},{"key":"2642_CR23","unstructured":"Hagiya M and Ohuchi A eds (2002) Proceedings of 8th international workshop on DNA-based computers DNA 2002 (Revised Papers). In: Lecture Notes in Computer Science LNCS, Vol. 2568, Springer-Verlag."},{"key":"2642_CR24","doi-asserted-by":"crossref","first-page":"123","DOI":"10.1016\/S0303-2647(99)00039-8","volume":"52","author":"S Ji","year":"1998","journal-title":"Biosystems"},{"key":"2642_CR25","doi-asserted-by":"crossref","unstructured":"Jonoska N, sa-Ardyen P and Seeman AN (1997) Computation by self-assembly of DNA graphs. In (Garzon, 2003), 123\u2013137","DOI":"10.1007\/3-540-36440-4_1"},{"key":"2642_CR26","unstructured":"Kari L, Winfree E and Gifford D eds (1999) Proceedings of 5th workshop on DNA Computers, MIT, Cambridge MA, 1999, Vol. 54, pp. 247\u2013258. DIMACS series of the American Mathematical Society"},{"key":"2642_CR27","unstructured":"Koza J, Deb K, Dorigo M, Fogel D, Garzon M, Iba H and Riolo R eds (1997). Proceedings of 2nd Annual Genetic Programming Conference. Morgan Kaufmann, San Mateo, California"},{"key":"2642_CR28","doi-asserted-by":"crossref","first-page":"1460","DOI":"10.1073\/pnas.95.4.1460","volume":"95","author":"J SantaLucia","year":"1998","unstructured":"SantaLucia J Jr (1998) A unified view of polymer, dumbbell, and oligonucleotideDNA nearest-neighbor thermodynamics. Proceedings of the National Academic Science 95(1998), 1460","journal-title":"Proceedings of the National Academic Science"},{"key":"2642_CR29","doi-asserted-by":"crossref","first-page":"33","DOI":"10.1007\/978-0-387-22464-0_2","volume-title":"Molecular Modeling and Simulation","author":"T Schlick","year":"2002"},{"key":"2642_CR30","doi-asserted-by":"crossref","DOI":"10.7551\/mitpress\/1763.001.0001","volume-title":"Cellular Automata Machines. In: A New Environment for Modeling MIT Press (1987)","author":"T Toffoli","year":"1987"},{"key":"2642_CR31","unstructured":"West M and Garzon MH (2003) Self-Aseembly of DNA Structures In Silico for 3-Colorability. Poster at the 10th Int. Workshop on DNA-Based Computers. Milan, Italy, 2004"},{"key":"2642_CR32","doi-asserted-by":"crossref","unstructured":"West M, Garzon M, and Blain D (2003) DNA-like Genomes for Evolution in silico. In: Proceedings of GECCO-2003, The Genetic and Evolutionary Programming Conference Springer-Verlag Lecture Notes in Computer Science Vol. 2723, pp. 413\u2013424","DOI":"10.1007\/3-540-45105-6_50"},{"key":"2642_CR33","unstructured":"Wetmur J (1997) Preliminary Proceedings of the Third Annual Meeting on DNA Based Computers, University of Pennsylvania, DIMACS Series American Mathematical Society 48, Providence, RI"},{"key":"2642_CR34","doi-asserted-by":"publisher","first-page":"539","DOI":"10.1038\/28998","volume":"394","author":"W Winfree","year":"1998","journal-title":"Nature"}],"container-title":["Natural Computing"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/link.springer.com\/content\/pdf\/10.1007\/s11047-004-2642-y.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/link.springer.com\/article\/10.1007\/s11047-004-2642-y\/fulltext.html","content-type":"text\/html","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/s11047-004-2642-y","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"},{"URL":"https:\/\/link.springer.com\/content\/pdf\/10.1007\/s11047-004-2642-y.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2024,11,3]],"date-time":"2024-11-03T01:37:11Z","timestamp":1730597831000},"score":1,"resource":{"primary":{"URL":"https:\/\/link.springer.com\/10.1007\/s11047-004-2642-y"}},"subtitle":["For biomolecule-based computing"],"short-title":[],"issued":{"date-parts":[[2004,12]]},"references-count":34,"journal-issue":{"issue":"4","published-print":{"date-parts":[[2004,12]]}},"alternative-id":["2642"],"URL":"https:\/\/doi.org\/10.1007\/s11047-004-2642-y","relation":{},"ISSN":["1567-7818","1572-9796"],"issn-type":[{"type":"print","value":"1567-7818"},{"type":"electronic","value":"1572-9796"}],"subject":[],"published":{"date-parts":[[2004,12]]}}}