{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2023,9,30]],"date-time":"2023-09-30T19:40:32Z","timestamp":1696102832471},"reference-count":22,"publisher":"Springer Science and Business Media LLC","issue":"1","license":[{"start":{"date-parts":[[2009,8,9]],"date-time":"2009-08-09T00:00:00Z","timestamp":1249776000000},"content-version":"tdm","delay-in-days":0,"URL":"http:\/\/www.springer.com\/tdm"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["Nat Comput"],"published-print":{"date-parts":[[2010,3]]},"DOI":"10.1007\/s11047-009-9148-6","type":"journal-article","created":{"date-parts":[[2009,8,8]],"date-time":"2009-08-08T10:55:51Z","timestamp":1249728951000},"page":"183-206","source":"Crossref","is-referenced-by-count":3,"title":["Isothermal reactivating Whiplash PCR for locally programmable molecular computation"],"prefix":"10.1007","volume":"9","author":[{"given":"John H.","family":"Reif","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Urmi","family":"Majumder","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"297","published-online":{"date-parts":[[2009,8,9]]},"reference":[{"key":"9148_CR1","doi-asserted-by":"crossref","first-page":"430","DOI":"10.1038\/35106533","volume":"414","author":"Y Benenson","year":"2001","unstructured":"Benenson Y, Paz-Elizur T, Adar R, Keinan E, Livneh Z, Shapiro E (2001) Programmable and autonomous computing machine made of biomolecules. Nature 414:430\u2013434","journal-title":"Nature"},{"key":"9148_CR2","doi-asserted-by":"crossref","first-page":"1372","DOI":"10.1039\/b402293a","volume":"12","author":"R Goodman","year":"2004","unstructured":"Goodman R, Berry R, Turberfield A (2004) The single-step synthesis of a DNA tetrahedron. Chem Commun 12:1372\u20131373","journal-title":"Chem Commun"},{"key":"9148_CR3","doi-asserted-by":"crossref","unstructured":"Hagiya M, Arita M, Kiga D, Sakamoto K, Yokoyama S (1999) Towards parallel evaluation of boolean\u00a0\u03bc formulas with molecules. In: Rubin H, Woods DH (eds) DNA based computers, vol III, pp 55\u201372. American Mathematical Society, Providence, RI","DOI":"10.1090\/dimacs\/048\/05"},{"key":"9148_CR4","volume-title":"Gene probes","author":"BD Hames","year":"1995","unstructured":"Hames BD, Higgins SJ (1995) Gene probes, vol 2. Oxford University Press, Oxford"},{"key":"9148_CR5","doi-asserted-by":"crossref","unstructured":"Komiya K, Yamamura M, Rose J (2008) Experimental validation of signal dependent operation in Whiplash PCR. DNA 14, LNCS","DOI":"10.1007\/978-3-642-03076-5_1"},{"key":"9148_CR6","unstructured":"Majumder U, LaBean T, Reif J (2008) Activatable tiles for compact, robust programmable assembly and other applications. DNA 13. LNCS 287:195\u2013214"},{"key":"9148_CR7","doi-asserted-by":"crossref","first-page":"661","DOI":"10.1021\/nl050084f","volume":"5","author":"F Mathieu","year":"2005","unstructured":"Mathieu F, Liao S, Kopatscht J, Wang T, Mao C, Seeman N (2005) Six-helix bundles designed from DNA. Nano Lett 5:661\u2013665","journal-title":"Nano Lett"},{"key":"9148_CR8","doi-asserted-by":"crossref","first-page":"38","DOI":"10.1007\/3-540-36440-4_4","volume":"2568","author":"D Matsuda","year":"2002","unstructured":"Matsuda D, Yamamura M (2002) Cascading Whiplash PCR with a nicking enzyme. Lect Notes Comput Sci 2568:38\u201346","journal-title":"Lect Notes Comput Sci"},{"key":"9148_CR9","doi-asserted-by":"crossref","unstructured":"Nishikawa A, Hagiya M (1999) Towards a system for simulating DNA computing with Whiplash PCR. In: Angeline PJ, Michalewicz Z, Schoenauer M, Yao X, Zalzala A (eds) Proceedings of the congress on evolutionary computation, vol 2, pp 960\u2013966. Mayflower Hotel, Washington DC, USA. IEEE Press, New York","DOI":"10.1109\/CEC.1999.782526"},{"key":"9148_CR10","doi-asserted-by":"crossref","first-page":"393","DOI":"10.1007\/11925903_31","volume":"4287","author":"J Rose","year":"2006","unstructured":"Rose J, Komiya K, Yaegashi S, Hagiya M (2006) Displacement Whiplash PCR: optimized architecture and experimental validation, DNA 12. Lect Notes Comput Sci 4287:393\u2013403","journal-title":"Lect Notes Comput Sci"},{"key":"9148_CR11","doi-asserted-by":"crossref","first-page":"104","DOI":"10.1007\/3-540-48017-X_10","volume":"2340","author":"JA Rose","year":"2001","unstructured":"Rose JA, Deaton RJ, Hagiya M, Suyama A (2001) Pna-mediated Whiplash PCR. Lect Notes Comput Sci 2340:104 \u2013 116","journal-title":"Lect Notes Comput Sci"},{"issue":"11","key":"9148_CR12","doi-asserted-by":"crossref","first-page":"3870","DOI":"10.1021\/nl802294d","volume":"8","author":"S Sahu","year":"2008","unstructured":"Sahu S, LaBean T, Reif JH (2008) A DNA nanotransport device powered by polymerase phi 29. Nano Lett 8(11):3870\u20133878","journal-title":"Nano Lett"},{"key":"9148_CR13","doi-asserted-by":"crossref","first-page":"81","DOI":"10.1016\/S0303-2647(99)00035-0","volume":"52","author":"K Sakamoto","year":"1999","unstructured":"Sakamoto K, Kiga D, Komiya K, Gouzu H, Yokoyama S, Ikeda S, Sugiyama H, Hagiya M (1999) State transitions by molecules. Biosystems 52:81\u201391","journal-title":"Biosystems"},{"issue":"52","key":"9148_CR14","doi-asserted-by":"crossref","first-page":"31235","DOI":"10.1074\/jbc.270.52.31235","volume":"270","author":"J Saturno","year":"1995","unstructured":"Saturno J, Blanco L, Salas M, Esteban J (1995) A novel kinetic analysis to calculate nucleotide affinity of proofreading DNA polymerases. J Bio Chem 270(52):31235\u201331243","journal-title":"J Bio Chem"},{"key":"9148_CR15","doi-asserted-by":"crossref","first-page":"573","DOI":"10.1080\/07391102.1990.10507829","volume":"8","author":"N Seeman","year":"1990","unstructured":"Seeman N (1990) De novo design of sequences for nucleic acid structural engineering. J Biomol Struct Dyn 8:573\u2013581","journal-title":"J Biomol Struct Dyn"},{"key":"9148_CR16","doi-asserted-by":"crossref","first-page":"618","DOI":"10.1038\/nature02307","volume":"427","author":"W Shih","year":"2004","unstructured":"Shih W, Quispe J, Joyce G (2004) A 1.7-kilobase single-stranded DNA that folds into a nanoscale octahedron. Nature 427:618\u2013621","journal-title":"Nature"},{"key":"9148_CR17","doi-asserted-by":"crossref","first-page":"279","DOI":"10.1016\/j.tcs.2005.07.027","volume":"244","author":"D Soloveichik","year":"2005","unstructured":"Soloveichik D, Winfree E (2005) The computational power of Benenson automata. Theor Comput Sci 244:279\u2013297","journal-title":"Theor Comput Sci"},{"issue":"7","key":"9148_CR18","doi-asserted-by":"crossref","first-page":"2299","DOI":"10.1073\/pnas.73.7.2299","volume":"73","author":"BJ Thompson","year":"1976","unstructured":"Thompson BJ, Camien MN, Warner RC (1976) Kinetics of branch migration in double-stranded DNA. Proc Natl Acad Sci USA 73(7):2299\u20132303","journal-title":"Proc Natl Acad Sci USA"},{"issue":"3","key":"9148_CR19","doi-asserted-by":"crossref","first-page":"303","DOI":"10.1038\/nbt0396-303","volume":"14","author":"S Tyagi","year":"1996","unstructured":"Tyagi S, Kramer F (1996) Molecular beacons: probes that fluoresce upon hybridization. Nat Biotechnol 14(3):303\u2013308","journal-title":"Nat Biotechnol"},{"key":"9148_CR20","unstructured":"Winfree E (1998a) Simulation of computing by self-assembly. Technical report 1998.22, Caltech"},{"key":"9148_CR21","unstructured":"Winfree E (1998b) Whiplash PCR for o(1) computing. Technical report 1998.23, Caltech"},{"issue":"6693","key":"9148_CR22","doi-asserted-by":"crossref","first-page":"539","DOI":"10.1038\/28998","volume":"394","author":"E Winfree","year":"1998","unstructured":"Winfree E, Liu F, Wenzler L, Seeman N (1998) Design and self-assembly of two-dimensional DNA crystals. Nature 394(6693):539\u2013544","journal-title":"Nature"}],"container-title":["Natural Computing"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/s11047-009-9148-6.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/article\/10.1007\/s11047-009-9148-6\/fulltext.html","content-type":"text\/html","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/s11047-009-9148-6","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2019,5,31]],"date-time":"2019-05-31T23:46:04Z","timestamp":1559346364000},"score":1,"resource":{"primary":{"URL":"http:\/\/link.springer.com\/10.1007\/s11047-009-9148-6"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2009,8,9]]},"references-count":22,"journal-issue":{"issue":"1","published-print":{"date-parts":[[2010,3]]}},"alternative-id":["9148"],"URL":"https:\/\/doi.org\/10.1007\/s11047-009-9148-6","relation":{},"ISSN":["1567-7818","1572-9796"],"issn-type":[{"value":"1567-7818","type":"print"},{"value":"1572-9796","type":"electronic"}],"subject":[],"published":{"date-parts":[[2009,8,9]]}}}