{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2022,3,31]],"date-time":"2022-03-31T06:17:44Z","timestamp":1648707464315},"reference-count":24,"publisher":"Springer Science and Business Media LLC","issue":"2","license":[{"start":{"date-parts":[[2011,12,25]],"date-time":"2011-12-25T00:00:00Z","timestamp":1324771200000},"content-version":"tdm","delay-in-days":0,"URL":"http:\/\/www.springer.com\/tdm"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["Nat Comput"],"published-print":{"date-parts":[[2012,6]]},"DOI":"10.1007\/s11047-011-9297-2","type":"journal-article","created":{"date-parts":[[2011,12,24]],"date-time":"2011-12-24T07:41:57Z","timestamp":1324712517000},"page":"339-349","source":"Crossref","is-referenced-by-count":0,"title":["Comparison of different methods to analyze a DNA computing library using the polymerase chain reaction"],"prefix":"10.1007","volume":"11","author":[{"given":"Cheryl P.","family":"Andam","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Jonathan R.","family":"Driscoll","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Jaime A.","family":"DiCesare","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Tim N.","family":"Enke","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Anthony J.","family":"Macula","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Susannah","family":"Gal","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"297","published-online":{"date-parts":[[2011,12,25]]},"reference":[{"key":"9297_CR1","doi-asserted-by":"crossref","first-page":"1021","DOI":"10.1126\/science.7973651","volume":"266","author":"L Adleman","year":"1994","unstructured":"Adleman L (1994) Molecular computation of solutions of combinatorial problems. Science 266:1021\u20131024","journal-title":"Science"},{"key":"9297_CR2","doi-asserted-by":"crossref","first-page":"165","DOI":"10.1007\/s11047-005-4460-2","volume":"5","author":"J Chen","year":"2006","unstructured":"Chen J, Deaton R, Garzon MH et al (2006) Characterization of non-cross hybridizing DNA oligonucleotides manufactured in vitro. Nat Comput 5:165\u2013181","journal-title":"Nat Comput"},{"key":"9297_CR3","doi-asserted-by":"crossref","first-page":"469","DOI":"10.2353\/jmoldx.2010.090221","volume":"12","author":"L Chiu","year":"2010","unstructured":"Chiu L, Couturier MR, Chiu T et al (2010) Comparison of Shiga toxin-producing Escherichia coli detection methods using clinical stool samples. J Mol Diagn 12:469\u2013475","journal-title":"J Mol Diagn"},{"key":"9297_CR4","doi-asserted-by":"crossref","first-page":"155","DOI":"10.1016\/j.jviromet.2009.07.033","volume":"162","author":"JM Cutr\u00edn","year":"2009","unstructured":"Cutr\u00edn JM, Olveira JG, Band\u00edn I et al (2009) Validation of real time RT-PCR applied to cell culture for diagnosis of any known genotype of viral haemorrhagic septicaemia virus. J Virol Methods 162:155\u2013162","journal-title":"J Virol Methods"},{"key":"9297_CR5","doi-asserted-by":"crossref","first-page":"1385","DOI":"10.1073\/pnas.97.4.1385","volume":"97","author":"D Faulhammer","year":"2000","unstructured":"Faulhammer D, Cukras AR, Lipton RJ et al (2000) Molecular computation: RNA solutions to chess problems. Proc Natl Acad Sci USA 97:1385\u20131389","journal-title":"Proc Natl Acad Sci USA"},{"key":"9297_CR6","doi-asserted-by":"crossref","first-page":"52","DOI":"10.1016\/j.jviromet.2009.05.014","volume":"161","author":"KS Feldman","year":"2009","unstructured":"Feldman KS, Foord A, Heine HG et al (2009) Design and evaluation of consensus PCR assays for henipaviruses. J Virol Methods 161:52\u201357","journal-title":"J Virol Methods"},{"key":"9297_CR7","first-page":"55","volume-title":"DNA11, 11th international meeting on DNA computing, London ON, June 2005. Lecture notes in computer science","author":"G Franco","year":"2006","unstructured":"Franco G, Manca V, Giagulli C et al (2006) DNA recombination by XPCR. In: Carbone A, Pierce NA (eds) DNA11, 11th international meeting on DNA computing, London ON, June 2005. Lecture notes in computer science, vol 3892. Springer-Verlag, Berlin, pp 55\u201366"},{"key":"9297_CR8","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1142\/9789812706799_0001","volume-title":"Current developments in mathematical biology. Series in knots and everything","author":"S Gal","year":"2007","unstructured":"Gal S, Monteith N, Shkalim S et al (2007) Methylation of DNA may be useful as a computational tool: experimental evidence. In: Mahdavi K, Culshaw R, Boucher J (eds) Current developments in mathematical biology. Series in knots and everything, vol 38. World Scientific, Hackensack, pp 1\u201314"},{"key":"9297_CR9","doi-asserted-by":"crossref","first-page":"333","DOI":"10.1007\/s11047-008-9090-z","volume":"8","author":"S Gal","year":"2009","unstructured":"Gal S, Monteith N, Macula AJ (2009) Successful preparation and analysis of a 5-site 2-variable DNA library. Nat Comput 8:333\u2013347","journal-title":"Nat Comput"},{"key":"9297_CR10","doi-asserted-by":"crossref","first-page":"45","DOI":"10.1016\/j.mimet.2009.04.005","volume":"78","author":"AV Hadjinicolaou","year":"2009","unstructured":"Hadjinicolaou AV, Demetriou VL, Hezka J et al (2009) Use of molecular beacons and multi-allelic real-time PCR for detection of and discrimination between virulent Bacillus anthracis and other Bacillus isolates. J Micro Methods 78:45\u201353","journal-title":"J Micro Methods"},{"key":"9297_CR11","first-page":"350","volume-title":"DNA12, 12th international meeting on DNA computing, Seoul, South Korea, June 2006. Lecture notes in computer science","author":"Z Ibrahim","year":"2006","unstructured":"Ibrahim Z, Rose JA, Tsuboi Y et al (2006) A new readout approach in DNA computing based on real-time PCR with TaqMan probes. In: Mao C, Yokomori T (eds) DNA12, 12th international meeting on DNA computing, Seoul, South Korea, June 2006. Lecture notes in computer science, vol 4287. Springer-Verlag, Berlin, pp 350\u2013359"},{"key":"9297_CR12","doi-asserted-by":"crossref","first-page":"277","DOI":"10.1007\/s11047-007-9047-7","volume":"7","author":"Z Ibrahim","year":"2008","unstructured":"Ibrahim Z, Rose JA, Suyama A et al (2008) Experimental implementation and analysis of a DNA computing readout method based on real-time PCR with TaqMan probes. Nat Comput 7:277\u2013286","journal-title":"Nat Comput"},{"key":"9297_CR13","doi-asserted-by":"crossref","first-page":"333","DOI":"10.1006\/jtbi.1997.0475","volume":"188","author":"PD Kaplan","year":"1997","unstructured":"Kaplan PD, Ouyang Q, Thaler DS et al (1997) Parallel overlap assembly for the construction of computational DNA libraries. J Theor Biol 188:333\u2013341","journal-title":"J Theor Biol"},{"key":"9297_CR14","doi-asserted-by":"crossref","first-page":"18","DOI":"10.1016\/j.biosystems.2005.07.005","volume":"83","author":"K Komiya","year":"2006","unstructured":"Komiya K, Sakamoto K, Kameda A et al (2006) DNA polymerase programmed with a hairpin DNA incorporates a multiple-instruction architecture into molecular computing. BioSystems 83:18\u201325","journal-title":"BioSystems"},{"key":"9297_CR15","doi-asserted-by":"crossref","first-page":"59","DOI":"10.1142\/S1793830909000051","volume":"1","author":"AJ Macula","year":"2009","unstructured":"Macula AJ, Gal S, Andam C et al (2009) PCR nonadaptive group testing of DNA libraries for biomolecular computing and taggant applications. Discret Math Algorithm Appl 1:59\u201369","journal-title":"Discret Math Algorithm Appl"},{"key":"9297_CR17","first-page":"78","volume":"6","author":"MS Muhammad","year":"2006","unstructured":"Muhammad MS, Osamu O (2006) A design and implementation method for elevator scheduling problem using DNA computing approach. Int J Comput Sci Netw Secur 6:78\u201384","journal-title":"Int J Comput Sci Netw Secur"},{"key":"9297_CR18","doi-asserted-by":"crossref","first-page":"2049","DOI":"10.1093\/nar\/23.11.2049","volume":"23","author":"SJ Odelberg","year":"1995","unstructured":"Odelberg SJ, Weiss RB, Hata A et al (1995) Template-switching during DNA synthesis by Thermus aquaticus DNA polymerase I. Nucleic Acids Res 23:2049\u20132057","journal-title":"Nucleic Acids Res"},{"key":"9297_CR19","doi-asserted-by":"crossref","first-page":"446","DOI":"10.1126\/science.278.5337.446","volume":"278","author":"Q Ouyang","year":"1997","unstructured":"Ouyang Q, Kaplan PD, Liu S et al (1997) DNA solution of the maximal clique problem. Science 278:446\u2013449","journal-title":"Science"},{"key":"9297_CR20","doi-asserted-by":"crossref","first-page":"1196","DOI":"10.1126\/science.1200520","volume":"332","author":"L Qian","year":"2011","unstructured":"Qian L, Winfree E (2011) Scaling up digital circuit computation with DNA strand displacement cascades. Science 332:1196\u20131201","journal-title":"Science"},{"key":"9297_CR21","first-page":"4263","volume":"6","author":"MFM Saaid","year":"2010","unstructured":"Saaid MFM, Ibrahim Z, Yusof ZM et al (2010) Automation of a DNA computing readout method based on real-time PCR implemented on a lightcycler system. Int J Innov Comput Inf Control 6:4263\u20134272","journal-title":"Int J Innov Comput Inf Control"},{"key":"9297_CR22","doi-asserted-by":"crossref","first-page":"276","DOI":"10.1016\/j.sbi.2010.03.009","volume":"200","author":"WM Shih","year":"2010","unstructured":"Shih WM, Lin C (2010) Knitting complex weaves with DNA origami. Curr Opin Struct Biol 200:276\u2013282","journal-title":"Curr Opin Struct Biol"},{"key":"9297_CR23","doi-asserted-by":"crossref","first-page":"234","DOI":"10.1186\/1471-2164-9-234","volume":"9","author":"N Taris","year":"2008","unstructured":"Taris N, Lang R, Camara MD (2008) Sequence polymorphism can produce serious artefacts in real-time PCR assays: hard lessons from Pacific oysters. BMC Genomics 9:234. doi: 10.1186\/1471-2164-9-234","journal-title":"BMC Genomics"},{"key":"9297_CR24","doi-asserted-by":"crossref","first-page":"151","DOI":"10.1152\/advan.00019.2005","volume":"29","author":"MA Valasek","year":"2005","unstructured":"Valasek MA, Repa JJ (2005) The power of real-time PCR. Adv Physiol Educ 29:151\u2013159","journal-title":"Adv Physiol Educ"},{"key":"9297_CR25","doi-asserted-by":"crossref","first-page":"1120","DOI":"10.1002\/cbic.200300662","volume":"4","author":"J Wilhelm","year":"2003","unstructured":"Wilhelm J, Pingoud A (2003) Real-time polymerase chain reaction. ChemBioChem 4:1120\u20131128","journal-title":"ChemBioChem"}],"container-title":["Natural Computing"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/s11047-011-9297-2.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/article\/10.1007\/s11047-011-9297-2\/fulltext.html","content-type":"text\/html","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/s11047-011-9297-2","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2019,6,1]],"date-time":"2019-06-01T03:46:08Z","timestamp":1559360768000},"score":1,"resource":{"primary":{"URL":"http:\/\/link.springer.com\/10.1007\/s11047-011-9297-2"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2011,12,25]]},"references-count":24,"journal-issue":{"issue":"2","published-print":{"date-parts":[[2012,6]]}},"alternative-id":["9297"],"URL":"https:\/\/doi.org\/10.1007\/s11047-011-9297-2","relation":{},"ISSN":["1567-7818","1572-9796"],"issn-type":[{"value":"1567-7818","type":"print"},{"value":"1572-9796","type":"electronic"}],"subject":[],"published":{"date-parts":[[2011,12,25]]}}}