{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,11,13]],"date-time":"2025-11-13T18:14:18Z","timestamp":1763057658564},"reference-count":33,"publisher":"Springer Science and Business Media LLC","issue":"2","license":[{"start":{"date-parts":[[2012,1,15]],"date-time":"2012-01-15T00:00:00Z","timestamp":1326585600000},"content-version":"tdm","delay-in-days":0,"URL":"http:\/\/www.springer.com\/tdm"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["Nat Comput"],"published-print":{"date-parts":[[2012,6]]},"DOI":"10.1007\/s11047-012-9303-3","type":"journal-article","created":{"date-parts":[[2012,1,16]],"date-time":"2012-01-16T10:31:14Z","timestamp":1326709874000},"page":"231-238","source":"Crossref","is-referenced-by-count":6,"title":["Design of an artificial functional nanomaterial with high recognition ability"],"prefix":"10.1007","volume":"11","author":[{"given":"Xingguo","family":"Liang","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Toshio","family":"Mochizuki","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Taiga","family":"Fujii","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Hiromu","family":"Kashida","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Hiroyuki","family":"Asanuma","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"297","published-online":{"date-parts":[[2012,1,15]]},"reference":[{"key":"9303_CR1","doi-asserted-by":"crossref","first-page":"73","DOI":"10.1038\/nature07971","volume":"459","author":"ES Andersen","year":"2009","unstructured":"Andersen ES, Dong M, Nielsen MM, Jahn K, Subramani R, Mamdouh W, Golas MM, Sander B, Stark H, Oliveira CLP, Pedersen JS, Birkedal V, Besenbacher F, Gothelf KV, Kjems J (2009) Self-assembly of a nanoscale DNA box with a controllable lid. Nature 459:73\u201377","journal-title":"Nature"},{"issue":"8","key":"9303_CR2","doi-asserted-by":"crossref","first-page":"2217","DOI":"10.1021\/ja021153k","volume":"125","author":"H Asanuma","year":"2003","unstructured":"Asanuma H, Shirasuka K, Takarada T, Kashida H, Komiyama M (2003) DNA-dye conjugates for controllable H* aggregation. J Am Chem Soc 125(8):2217\u20132223","journal-title":"J Am Chem Soc"},{"key":"9303_CR3","doi-asserted-by":"crossref","first-page":"203","DOI":"10.1038\/nprot.2006.465","volume":"2","author":"H Asanuma","year":"2007","unstructured":"Asanuma H, Liang XG, Nishioka H, Matsunaga D, Liu MZ, Komiyama M (2007) Synthesis of azobenzene-tethered DNA for reversible photo-regulation of DNA functions: hybridization and transcription. Nat Protoc 2:203\u2013212","journal-title":"Nat Protoc"},{"key":"9303_CR4","doi-asserted-by":"crossref","first-page":"3392","DOI":"10.1039\/b607033g","volume":"4","author":"MK Beissenhirtz","year":"2006","unstructured":"Beissenhirtz MK, Willner I (2006) DNA-based machines. Org Biomol Chem 4:3392\u20133401","journal-title":"Org Biomol Chem"},{"key":"9303_CR5","doi-asserted-by":"crossref","first-page":"430","DOI":"10.1038\/35106533","volume":"414","author":"Y Benenson","year":"2001","unstructured":"Benenson Y, Paz-Elizur T, Adar R, Keinan E, Livneh Z, Shapiro E (2001) Programmable and autonomous computing machine made of biomolecules. Nature 414:430\u2013434","journal-title":"Nature"},{"issue":"6990","key":"9303_CR6","doi-asserted-by":"crossref","first-page":"423","DOI":"10.1038\/nature02551","volume":"429","author":"Y Benenson","year":"2004","unstructured":"Benenson Y, Gil B, Ben-Dor U, Adar R, Shapiro E (2004) An autonomous molecular computer for logical control of gene expression. Nature 429(6990):423\u2013429","journal-title":"Nature"},{"issue":"5","key":"9303_CR7","doi-asserted-by":"crossref","first-page":"1581","DOI":"10.1093\/nar\/gkl075","volume":"34","author":"S Beyer","year":"2006","unstructured":"Beyer S, Simmel FC (2006) A modular DNA signal translator for the controlled release of a protein by an aptamer. Nucleic Acid Res 34(5):1581\u20131587","journal-title":"Nucleic Acid Res"},{"issue":"39","key":"9303_CR8","doi-asserted-by":"crossref","first-page":"10092","DOI":"10.1002\/chem.200900962","volume":"15","author":"T Fujii","year":"2009","unstructured":"Fujii T, Kashida H, Asanuma H (2009) Analysis of coherent heteroclustering of different dyes by use of threoninol-nucleotides for comparison with the molecular exciton theory. Chem Eur J 15(39):10092\u201310102","journal-title":"Chem Eur J"},{"issue":"4","key":"9303_CR9","doi-asserted-by":"crossref","first-page":"369","DOI":"10.1021\/ar040153h","volume":"38","author":"M Fujita","year":"2005","unstructured":"Fujita M, Tominaga M, Hori A, Therrien B (2005) Coordination assemblies from a Pd(II)-cornered square complex. Acc Chem Res 38(4):369\u2013378","journal-title":"Acc Chem Res"},{"issue":"8","key":"9303_CR10","doi-asserted-by":"crossref","first-page":"1051","DOI":"10.1016\/j.mejo.2007.10.021","volume":"39","author":"M Hamdi","year":"2008","unstructured":"Hamdi M, Ferreira A (2008) DNA nanorobotics. Microelectron J 39(8):1051\u20131059","journal-title":"Microelectron J"},{"key":"9303_CR11","doi-asserted-by":"crossref","first-page":"198","DOI":"10.1038\/nature06597","volume":"452","author":"Y He","year":"2008","unstructured":"He Y, Ye T, Su M, Zhang C, Ribbe AE, Jiang W, Mao CD (2008) Hierarchical self-assembly of DNA into symmetric supramolecular polyhedra. Nature 452:198\u2013201","journal-title":"Nature"},{"key":"9303_CR12","doi-asserted-by":"crossref","DOI":"10.1002\/9783527611478","volume-title":"Foldamers: structure, properties, and applications","author":"S Hecht","year":"2007","unstructured":"Hecht S, Huc I (2007) Foldamers: structure, properties, and applications. Wiley-VCH Verlag GmBH & Co. KGaA, Weinheim"},{"issue":"16","key":"9303_CR13","doi-asserted-by":"crossref","first-page":"2892","DOI":"10.1039\/b806406g","volume":"6","author":"H Kashida","year":"2008","unstructured":"Kashida H, Fujii T, Asanuma H (2008) Threoninol as a scaffold of dyes (threoninol-nucleotide) and their stable interstrand clustering in duplexes. Org Biomol Chem 6(16):2892\u20132899","journal-title":"Org Biomol Chem"},{"key":"9303_CR14","doi-asserted-by":"crossref","first-page":"72","DOI":"10.1002\/anie.200504313","volume":"46","author":"ER Kay","year":"2007","unstructured":"Kay ER, Leigh DA, Zerbetto F (2007) Synthetic molecular motors and mechanical machines. Angew Chem Int Ed 46:72\u2013191","journal-title":"Angew Chem Int Ed"},{"issue":"24","key":"9303_CR15","doi-asserted-by":"crossref","first-page":"4830","DOI":"10.1093\/nar\/27.24.4830","volume":"27","author":"SO Kelley","year":"1999","unstructured":"Kelley SO, Boon EM, Barton JK (1999) Single-base mismatch detection based on charge transduction through DNA. Nucl Acids Res 27(24):4830\u20134837","journal-title":"Nucl Acids Res"},{"issue":"2","key":"9303_CR16","doi-asserted-by":"crossref","first-page":"655","DOI":"10.1093\/nar\/28.2.655","volume":"28","author":"IV Kutyavin","year":"2000","unstructured":"Kutyavin IV, Afonina IA, Mills A, Gorn VV, Lukhtanov EA, Belousov ES, Singer MJ, Walburger DK, Lokhov SG, Gall AA, Dempcy R, Reed MW, Meyer RB, Hedgpeth J (2000) 3\u2032-Minor groove binder-DNA probes increase sequence specificity at PCR extension temperatures. Nucl Acids Res 28(2):655\u2013661","journal-title":"Nucl Acids Res"},{"issue":"3","key":"9303_CR17","doi-asserted-by":"crossref","first-page":"5","DOI":"10.1109\/5992.998634","volume":"4","author":"DI Lewin","year":"2002","unstructured":"Lewin DI (2002) DNA computing. Comput Sci Eng 4(3):5\u20138","journal-title":"Comput Sci Eng"},{"issue":"5","key":"9303_CR18","doi-asserted-by":"crossref","first-page":"702","DOI":"10.1002\/cbic.200700649","volume":"9","author":"XG Liang","year":"2008","unstructured":"Liang XG, Nishioka H, Takenaka N, Asanuma H (2008) A DNA nanomachine powered by light irradiation. ChemBioChem 9(5):702\u2013705","journal-title":"ChemBioChem"},{"key":"9303_CR19","first-page":"21","volume":"5347","author":"XG Liang","year":"2009","unstructured":"Liang XG, Nishioka H, Takenaka N, Asanuma H (2009a) Construction of photon-fueled DNA nanomachines by tethering azobenzenes as engines. LNCS 5347:21\u201332","journal-title":"LNCS"},{"issue":"15","key":"9303_CR20","doi-asserted-by":"crossref","first-page":"1761","DOI":"10.1002\/smll.200900223","volume":"5","author":"XG Liang","year":"2009","unstructured":"Liang XG, Mochizuki T, Asanuma H (2009b) A supra-photoswitch involving sandwiched DNA base pairs and azobenzenes for light-driven nanostructures and nanodevices. Small 5(15):1761\u20131768","journal-title":"Small"},{"key":"9303_CR21","doi-asserted-by":"crossref","first-page":"575","DOI":"10.1039\/B915993B","volume":"20","author":"XG Liang","year":"2010","unstructured":"Liang XG, Nishioka H, Mochizuki T, Asanuma H (2010) An interstrand-wedged duplex composed of alternating DNA base pairs and covalently attached intercalators. J Mater Chem 20:575\u2013581","journal-title":"J Mater Chem"},{"key":"9303_CR22","doi-asserted-by":"crossref","first-page":"4900","DOI":"10.1002\/anie.200600387","volume":"45","author":"G Mayer","year":"2006","unstructured":"Mayer G, Heckel A (2006) Biologically active molecules with a \u201clight switch\u201d. Angew Chem Int Ed Eng 45:4900\u20134921","journal-title":"Angew Chem Int Ed Eng"},{"key":"9303_CR23","doi-asserted-by":"crossref","first-page":"607","DOI":"10.1038\/382607a0","volume":"382","author":"CA Mirkin","year":"1996","unstructured":"Mirkin CA, Letsinger RL, Mucic RC, Storhoff JJ (1996) A DNA-based method for rationally assembling nanoparticles into macroscopic materials. Nature 382:607\u2013609","journal-title":"Nature"},{"issue":"3","key":"9303_CR24","doi-asserted-by":"crossref","first-page":"119","DOI":"10.1016\/j.tibs.2005.01.007","volume":"30","author":"NC Seeman","year":"2005","unstructured":"Seeman NC (2005) From genes to machines: DNA nanomechanical devices. Trends Biochem Sci 30(3):119\u2013125","journal-title":"Trends Biochem Sci"},{"key":"9303_CR25","doi-asserted-by":"crossref","first-page":"237","DOI":"10.1088\/0034-4885\/68\/1\/R05","volume":"68","author":"NC Seeman","year":"2005","unstructured":"Seeman NC, Lukeman PS (2005) Nucleic acid nanostructures: bottom-up control of geometry on the nanoscale. Rep Prog Phys 68:237\u2013270","journal-title":"Rep Prog Phys"},{"issue":"5910","key":"9303_CR26","doi-asserted-by":"crossref","first-page":"112","DOI":"10.1126\/science.1165831","volume":"323","author":"J Sharma","year":"2009","unstructured":"Sharma J, Chhabra R, Cheng A, Brownell J, Liu Y, Yan H (2009) Control of self-assembly of DNA tubules through integration of gold nanoparticles. Science 323(5910):112\u2013116","journal-title":"Science"},{"key":"9303_CR27","doi-asserted-by":"crossref","first-page":"618","DOI":"10.1038\/nature02307","volume":"427","author":"WM Shih","year":"2004","unstructured":"Shih WM, Quispe JD, Joyce GF (2004) A 1.7-kilobase single-stranded DNA that folds into a nanoscale octahedron. Nature 427:618\u2013621","journal-title":"Nature"},{"issue":"35","key":"9303_CR28","doi-asserted-by":"crossref","first-page":"10834","DOI":"10.1021\/ja047543j","volume":"126","author":"JS Shin","year":"2004","unstructured":"Shin JS, Pierce NA (2004) A synthetic DNA walker for molecular transport. J Am Chem Soc 126(35):10834\u201310835","journal-title":"J Am Chem Soc"},{"key":"9303_CR29","doi-asserted-by":"crossref","first-page":"3560","DOI":"10.1021\/nl101829m","volume":"10","author":"F Tanaka","year":"2010","unstructured":"Tanaka F, Mochizuki T, Liang XG, Asanuma H, Tanaka S, Suzuki K, Kitamura S, Nishikawa A, Ui-Tei K, Hagiya M (2010) Robust and photo-controllable DNA capsules using azobenzenes. Nano Lett 10:3560\u20133565","journal-title":"Nano Lett"},{"key":"9303_CR30","doi-asserted-by":"crossref","first-page":"2","DOI":"10.1002\/anie.200790256","volume":"47","author":"K Wang","year":"2008","unstructured":"Wang K, Tang Z, Yang CJ, Kim Y, Fang X, Li W, Wu Y, Medley CD, Cao Z, Li J, Colon P, Lin H, Tan W (2008) Molecular engineering of DNA: molecular beacons. Angew Chem Int Ed 47:2\u201317","journal-title":"Angew Chem Int Ed"},{"key":"9303_CR31","doi-asserted-by":"crossref","first-page":"605","DOI":"10.1038\/35020524","volume":"406","author":"B Yurke","year":"2000","unstructured":"Yurke B, Turberfield AJ, Mills AP, Simmel FC, Neumann JL (2000) A DNA-fuelled molecular machine made of DNA. Nature 406:605\u2013608","journal-title":"Nature"},{"key":"9303_CR32","doi-asserted-by":"crossref","first-page":"74","DOI":"10.1038\/nature08274","volume":"461","author":"JP Zheng","year":"2001","unstructured":"Zheng JP, Birktoft JJ, Chen Y, Wang T, Sha RJ, Constantinou PE, Ginell SL, Mao CD, Seeman NC (2001) From molecular to macroscopic via the rational design of a self-assembled 3D DNA crystal. Nature 461:74\u201377","journal-title":"Nature"},{"key":"9303_CR33","doi-asserted-by":"crossref","unstructured":"Zhou MG, Liang XG, Mochizuki T, Asanuma H (2010) A light-driven DNA nanomachine for efficiently photoswitching RNA digestion. Angew Chem Int Ed 49:2167\u20132170","DOI":"10.1002\/anie.200907082"}],"container-title":["Natural Computing"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/s11047-012-9303-3.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/article\/10.1007\/s11047-012-9303-3\/fulltext.html","content-type":"text\/html","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/s11047-012-9303-3","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2019,6,22]],"date-time":"2019-06-22T14:30:48Z","timestamp":1561213848000},"score":1,"resource":{"primary":{"URL":"http:\/\/link.springer.com\/10.1007\/s11047-012-9303-3"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2012,1,15]]},"references-count":33,"journal-issue":{"issue":"2","published-print":{"date-parts":[[2012,6]]}},"alternative-id":["9303"],"URL":"https:\/\/doi.org\/10.1007\/s11047-012-9303-3","relation":{},"ISSN":["1567-7818","1572-9796"],"issn-type":[{"value":"1567-7818","type":"print"},{"value":"1572-9796","type":"electronic"}],"subject":[],"published":{"date-parts":[[2012,1,15]]}}}