{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,10,17]],"date-time":"2025-10-17T13:46:24Z","timestamp":1760708784229},"reference-count":64,"publisher":"Springer Science and Business Media LLC","issue":"3","license":[{"start":{"date-parts":[[2015,2,7]],"date-time":"2015-02-07T00:00:00Z","timestamp":1423267200000},"content-version":"tdm","delay-in-days":0,"URL":"http:\/\/www.springer.com\/tdm"}],"content-domain":{"domain":["link.springer.com"],"crossmark-restriction":false},"short-container-title":["Nat Comput"],"published-print":{"date-parts":[[2016,9]]},"DOI":"10.1007\/s11047-015-9485-6","type":"journal-article","created":{"date-parts":[[2015,2,6]],"date-time":"2015-02-06T04:56:07Z","timestamp":1423198567000},"page":"449-463","update-policy":"http:\/\/dx.doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":10,"title":["Gene expression and protein\u2013protein interaction data for identification of colon cancer related genes using f-information measures"],"prefix":"10.1007","volume":"15","author":[{"given":"Sushmita","family":"Paul","sequence":"first","affiliation":[]},{"given":"Pradipta","family":"Maji","sequence":"additional","affiliation":[]}],"member":"297","published-online":{"date-parts":[[2015,2,7]]},"reference":[{"issue":"20","key":"9485_CR1","doi-asserted-by":"crossref","first-page":"14,875","DOI":"10.1016\/S0021-9258(18)82414-0","volume":"268","author":"IW Althaus","year":"1993","unstructured":"Althaus IW, Gonzales AJ, Chou JJ, Romero DL, Deibel MR, Chou KC, Kezdy FJ, Resnick L, Busso ME, So AG (1993) The quinoline U-78036 is a potent inhibitor of HIV-1 reverse transcriptase. J Biol Chem 268(20):14,875\u201314,880","journal-title":"J Biol Chem"},{"issue":"5903","key":"9485_CR2","doi-asserted-by":"crossref","first-page":"881","DOI":"10.1126\/science.1156409","volume":"322","author":"D Altshuler","year":"2008","unstructured":"Altshuler D, Daly MJ, Lander ES (2008) Genetic mapping in human disease. Science 322(5903):881\u2013888","journal-title":"Science"},{"issue":"4","key":"9485_CR3","doi-asserted-by":"crossref","first-page":"342","DOI":"10.1139\/v08-020","volume":"86","author":"J Andraos","year":"2008","unstructured":"Andraos J (2008) Kinetic plasticity and the determination of product ratios for kinetic schemes leading to multiple products without rate laws\u2014new methods based on directed graphs. Can J Chem 86(4):342\u2013357","journal-title":"Can J Chem"},{"issue":"11","key":"9485_CR4","doi-asserted-by":"crossref","first-page":"e8090","DOI":"10.1371\/journal.pone.0008090","volume":"4","author":"F Barrenas","year":"2009","unstructured":"Barrenas F, Chavali S, Holme P, Mobini R, Benson M (2009) Network properties of complex human disease genes Identified through genome-wide association studies. PLoS ONE 4(11):e8090","journal-title":"PLoS ONE"},{"issue":"4","key":"9485_CR5","doi-asserted-by":"crossref","first-page":"1165","DOI":"10.1214\/aos\/1013699998","volume":"29","author":"Y Benjamini","year":"2001","unstructured":"Benjamini Y, Yekutieli D (2001) The control of the false discovery rate in multiple testing under dependency. Ann Stat 29(4):1165\u20131188","journal-title":"Ann Stat"},{"issue":"2","key":"9485_CR6","doi-asserted-by":"crossref","first-page":"208","DOI":"10.1109\/TCBB.2009.81","volume":"7","author":"P Bogdanov","year":"2010","unstructured":"Bogdanov P, Singh A (2010) Molecular function prediction using neighborhood features. IEEE\/ACM Trans Comput Biol Bioinf 7(2):208\u2013217","journal-title":"IEEE\/ACM Trans Comput Biol Bioinf"},{"issue":"9","key":"9485_CR7","doi-asserted-by":"crossref","first-page":"e12,726","DOI":"10.1371\/journal.pone.0012726","volume":"5","author":"YD Cai","year":"2010","unstructured":"Cai YD, Huang T, Feng KY, Hu L, Xie L (2010) A unified 35-gene signature for both subtype classification and survival prediction in diffuse large B-cell lymphomas. PLoS ONE 5(9):e12,726","journal-title":"PLoS ONE"},{"issue":"1","key":"9485_CR8","doi-asserted-by":"crossref","first-page":"73","DOI":"10.1186\/1471-2105-10-73","volume":"10","author":"J Chen","year":"2009","unstructured":"Chen J, Aronow B, Jegga A (2009) Disease candidate gene identification and prioritization using protein interaction networks. BMC Bioinform 10(1):73","journal-title":"BMC Bioinform"},{"issue":"6","key":"9485_CR9","doi-asserted-by":"crossref","first-page":"e10,972","DOI":"10.1371\/journal.pone.0010972","volume":"5","author":"L Chen","year":"2010","unstructured":"Chen L, Cai YD, Shi XH, Huang T (2010) Analysis of metabolic pathway using hybrid properties. PLoS ONE 5(6):e10,972","journal-title":"PLoS ONE"},{"issue":"1","key":"9485_CR10","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1016\/0301-4622(90)80056-D","volume":"35","author":"KC Chou","year":"1990","unstructured":"Chou KC (1990) Applications of graph theory to enzyme kinetics and protein folding kinetics: steady and non-steady-state systems. Biophys Chem 35(1):1\u201324","journal-title":"Biophys Chem"},{"issue":"1","key":"9485_CR11","doi-asserted-by":"crossref","first-page":"97","DOI":"10.1007\/BF01164628","volume":"12","author":"KC Chou","year":"1993","unstructured":"Chou KC (1993) Graphic rule for non-steady-state enzyme kinetics and protein folding kinetics. J Math Chem 12(1):97\u2013108","journal-title":"J Math Chem"},{"key":"9485_CR12","doi-asserted-by":"crossref","first-page":"369","DOI":"10.2174\/138920010791514261","volume":"11","author":"KC Chou","year":"2010","unstructured":"Chou KC (2010) Graphic rule for drug metabolism systems. Curr Drug Metab 11:369\u2013378","journal-title":"Curr Drug Metab"},{"key":"9485_CR13","doi-asserted-by":"crossref","first-page":"829","DOI":"10.1042\/bj1870829","volume":"187","author":"KC Chou","year":"1980","unstructured":"Chou KC, Forsen S (1980) Graphical rules for enzyme-catalysed rate laws. Biochem J 187:829\u2013835","journal-title":"Biochem J"},{"issue":"2","key":"9485_CR14","doi-asserted-by":"crossref","first-page":"217","DOI":"10.1006\/abio.1994.1405","volume":"221","author":"KC Chou","year":"1994","unstructured":"Chou KC, Kezdy FJ, Reusser F (1994) Kinetics of processive nucleic acid polymerases and nucleases. Anal Biochem 221(2):217\u2013230","journal-title":"Anal Biochem"},{"key":"9485_CR15","doi-asserted-by":"crossref","first-page":"492","DOI":"10.1038\/ng0508-492","volume":"40","author":"ET Dermitzakis","year":"2008","unstructured":"Dermitzakis ET (2008) From gene expression to disease risk. Nat Genet 40:492\u2013493","journal-title":"Nat Genet"},{"issue":"1","key":"9485_CR16","doi-asserted-by":"crossref","first-page":"269","DOI":"10.1007\/BF01386390","volume":"1","author":"EW Dijkstra","year":"1959","unstructured":"Dijkstra EW (1959) A note on two problems in connexion with graphs. Numer Math 1(1):269\u2013271","journal-title":"Numer Math"},{"key":"9485_CR17","doi-asserted-by":"crossref","unstructured":"Ding C, Peng H (2003) Minimum redundancy feature selection from microarray gene expression data. In: Proceedings of the international conference on computational systems bioinformatics, pp 523\u2013528","DOI":"10.1109\/CSB.2003.1227396"},{"issue":"2","key":"9485_CR18","doi-asserted-by":"crossref","first-page":"185","DOI":"10.1142\/S0219720005001004","volume":"3","author":"C Ding","year":"2005","unstructured":"Ding C, Peng H (2005) Minimum redundancy feature selection from microarray gene expression data. J Bioinform Comput Biol 3(2):185\u2013205","journal-title":"J Bioinform Comput Biol"},{"key":"9485_CR19","volume-title":"Pattern classification and scene analysis","author":"RO Duda","year":"1999","unstructured":"Duda RO, Hart PE, Stork DG (1999) Pattern classification and scene analysis. Wiley, New York"},{"issue":"21","key":"9485_CR20","doi-asserted-by":"crossref","first-page":"8685","DOI":"10.1073\/pnas.0701361104","volume":"104","author":"KI Goh","year":"2007","unstructured":"Goh KI, Cusick ME, Valle D, Childs B, Vidal M, Barabsi AL (2007) The human disease network. Proc Natl Acad Sci USA 104(21):8685\u20138690","journal-title":"Proc Natl Acad Sci USA"},{"issue":"2","key":"9485_CR21","doi-asserted-by":"crossref","first-page":"271","DOI":"10.1101\/gr.117523.110","volume":"22","author":"T Hinoue","year":"2012","unstructured":"Hinoue T, Weisenberger DJ, Lange CP, Shen H, Byun HM, Van Den Berg D, Malik S, Pan F, Noushmehr H, van Dijk CM, Tollenaar RAEM, Laird PW (2012) Genome-scale analysis of aberrant DNA methylation in colorectal cancer. Genome Res 22(2):271\u2013282","journal-title":"Genome Res"},{"issue":"1","key":"9485_CR22","doi-asserted-by":"crossref","first-page":"44","DOI":"10.1038\/nprot.2008.211","volume":"4","author":"DW Huang","year":"2009","unstructured":"Huang DW, Sherman BT, Lempicki RA (2009a) Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources. Nat Protoc 4(1):44\u201357","journal-title":"Nat Protoc"},{"issue":"12","key":"9485_CR23","doi-asserted-by":"crossref","first-page":"e8126","DOI":"10.1371\/journal.pone.0008126","volume":"4","author":"T Huang","year":"2009","unstructured":"Huang T, Cui W, Hu L, Feng K, Li YX, Cai YD (2009b) Prediction of pharmacological and xenobiotic responses to drugs based on time course gene expression profiles. PLoS ONE 4(12):e8126","journal-title":"PLoS ONE"},{"issue":"9","key":"9485_CR24","doi-asserted-by":"crossref","first-page":"e12,726","DOI":"10.1371\/journal.pone.0012936","volume":"5","author":"T Huang","year":"2010","unstructured":"Huang T, Cai YD, Chen L, Hu LL, Kong XY, Li YX, Chou KC (2010a) Selection of reprogramming factors of induced pluripotent stem cells based on the protein interaction network and functional profiles. PLoS ONE 5(9):e12,726","journal-title":"PLoS ONE"},{"issue":"6","key":"9485_CR25","doi-asserted-by":"crossref","first-page":"e10,972","DOI":"10.1371\/journal.pone.0010972","volume":"5","author":"T Huang","year":"2010","unstructured":"Huang T, Shi XH, Wang P, He Z, Feng KY, Hu L, Kong X, Li YX, Cai YD, Chou KC (2010b) Analysis and prediction of the metabolic stability of proteins based on their sequential features, subcellular locations and interaction networks. PLoS ONE 5(6):e10,972","journal-title":"PLoS ONE"},{"issue":"9","key":"9485_CR26","doi-asserted-by":"crossref","first-page":"e25,297","DOI":"10.1371\/journal.pone.0025297","volume":"6","author":"T Huang","year":"2011","unstructured":"Huang T, Chen L, Cai YD, Chou KC (2011) Classification and analysis of regulatory pathways using graph property, biochemical and physicochemical property, and functional property. PLoS ONE 6(9):e25,297","journal-title":"PLoS ONE"},{"issue":"1","key":"9485_CR27","doi-asserted-by":"crossref","first-page":"272","DOI":"10.1093\/nar\/gkg126","volume":"31","author":"JL Huret","year":"2003","unstructured":"Huret JL, Dessen P, Bernheim A (2003) Atlas of genetics and cytogenetics in oncology and haematology, year 2003. Nucl Acids Res 31(1):272\u2013274","journal-title":"Nucl Acids Res"},{"issue":"1","key":"9485_CR28","doi-asserted-by":"crossref","first-page":"95","DOI":"10.1093\/bioinformatics\/btq615","volume":"27","author":"P Jia","year":"2011","unstructured":"Jia P, Zheng S, Long J, Zheng W, Zhao Z (2011) dmGWAS: dense module searching for genome-wide association studies in protein\u2013protein interaction networks. Bioinformatics 27(1):95\u2013102","journal-title":"Bioinformatics"},{"issue":"9","key":"9485_CR29","doi-asserted-by":"crossref","first-page":"2888","DOI":"10.1073\/pnas.0307326101","volume":"101","author":"U Karaoz","year":"2004","unstructured":"Karaoz U, Murali TM, Letovsky S, Zheng Y, Ding C, Cantor CR, Kasif S (2004) Whole-genome annotation by using evidence integration in functional-linkage networks. Proc Natl Acad Sci USA 101(9):2888\u20132893","journal-title":"Proc Natl Acad Sci USA"},{"issue":"2","key":"9485_CR30","doi-asserted-by":"crossref","first-page":"181","DOI":"10.1089\/cmb.2008.05TT","volume":"16","author":"S Karni","year":"2009","unstructured":"Karni S, Soreq H, Sharan R (2009) A network-based method for predicting disease-causing genes. J Comput Biol 16(2):181\u2013189","journal-title":"J Comput Biol"},{"issue":"suppl 1","key":"9485_CR31","doi-asserted-by":"crossref","first-page":"D767","DOI":"10.1093\/nar\/gkn892","volume":"37","author":"TS Keshava Prasad","year":"2009","unstructured":"Keshava Prasad TS, Goel R, Kandasamy K, Keerthikumar S, Kumar S, Mathivanan S, Telikicherla D, Raju R, Shafreen B, Venugopal A, Balakrishnan L, Marimuthu A, Banerjee S, Somanathan DS, Sebastian A, Rani S, Ray S, Kanth S, Ahmed M, Kashyap MK, Mohmood R, Ramachandra YL, Krishna V, Rahiman BA, Mohan S, Ranganathan P, Ramabadran S, Chaerkady R, Pandey A (2009) Human protein reference database-2009 update. Nucleic Acids Res 37(suppl 1):D767\u2013D772","journal-title":"Nucleic Acids Res"},{"issue":"4","key":"9485_CR32","doi-asserted-by":"crossref","first-page":"949","DOI":"10.1016\/j.ajhg.2008.02.013","volume":"82","author":"S Kohler","year":"2008","unstructured":"Kohler S, Bauer S, Horn D, Robinson PN (2008) Walking the interactome for prioritization of candidate disease genes. Am J Hum Genet 82(4):949\u2013958","journal-title":"Am J Hum Genet"},{"issue":"2","key":"9485_CR33","doi-asserted-by":"crossref","first-page":"e9293","DOI":"10.1371\/journal.pone.0009293","volume":"5","author":"YAI Kourmpetis","year":"2010","unstructured":"Kourmpetis YAI, van Dijk ADJ, Bink MCAM, van Ham RCHJ, ter Braak CJF (2010) Bayesian Markov random field analysis for protein function prediction based on network data. PLoS ONE 5(2):e9293","journal-title":"PLoS ONE"},{"issue":"suppl 1","key":"9485_CR34","doi-asserted-by":"crossref","first-page":"i197","DOI":"10.1093\/bioinformatics\/btg1026","volume":"19","author":"S Letovsky","year":"2003","unstructured":"Letovsky S, Kasif S (2003) Predicting protein function from protein\/protein interaction data: a probabilistic approach. Bioinformatics 19(suppl 1):i197\u2013i204","journal-title":"Bioinformatics"},{"issue":"4","key":"9485_CR35","doi-asserted-by":"crossref","first-page":"e33,393","DOI":"10.1371\/journal.pone.0033393","volume":"7","author":"BQ Li","year":"2012","unstructured":"Li BQ, Huang T, Liu L, Cai YD, Chou KC (2012) Identification of colorectal cancer related genes with mRMR and shortest path in protein\u2013protein interaction network. PLoS ONE 7(4):e33,393","journal-title":"PLoS ONE"},{"issue":"Suppl 7","key":"9485_CR36","doi-asserted-by":"crossref","first-page":"S27","DOI":"10.1186\/1471-2164-13-S7-S27","volume":"13","author":"Y Li","year":"2012","unstructured":"Li Y, Li J (2012) Disease gene identification by random walk on multigraphs merging heterogeneous genomic and phenotype data. BMC Genom 13(Suppl 7):S27","journal-title":"BMC Genom"},{"issue":"1","key":"9485_CR37","doi-asserted-by":"crossref","first-page":"76","DOI":"10.1186\/1471-2105-6-76","volume":"6","author":"X Liu","year":"2005","unstructured":"Liu X, Krishnan A, Mondry A (2005) An entropy based gene selection method for cancer classification using microarray data. BMC Bioinform 6(1):76","journal-title":"BMC Bioinform"},{"issue":"4","key":"9485_CR38","doi-asserted-by":"crossref","first-page":"1063","DOI":"10.1109\/TBME.2008.2004502","volume":"56","author":"P Maji","year":"2009","unstructured":"Maji P (2009) $$f$$ f -information measures for efficient selection of discriminative genes from microarray data. IEEE Trans Biomed Eng 56(4):1063\u20131069","journal-title":"IEEE Trans Biomed Eng"},{"issue":"1","key":"9485_CR39","doi-asserted-by":"crossref","first-page":"127","DOI":"10.1109\/TKDE.2010.210","volume":"24","author":"P Maji","year":"2012","unstructured":"Maji P (2012) Mutual information based supervised attribute clustering for microarray sample classification. IEEE Trans Knowl Data Eng 24(1):127\u2013140","journal-title":"IEEE Trans Knowl Data Eng"},{"issue":"3","key":"9485_CR40","doi-asserted-by":"crossref","first-page":"408","DOI":"10.1016\/j.ijar.2010.09.006","volume":"52","author":"P Maji","year":"2011","unstructured":"Maji P, Paul S (2011) Rough set based maximum relevance-maximum significance criterion and gene selection from microarray data. Int J Approx Reason 52(3):408\u2013426","journal-title":"Int J Approx Reason"},{"key":"9485_CR41","doi-asserted-by":"crossref","DOI":"10.1007\/978-3-319-05630-2","volume-title":"Scalable pattern recognition algorithms: applications in computational biology and bioinformatics","author":"P Maji","year":"2014","unstructured":"Maji P, Paul S (2014) Scalable pattern recognition algorithms: applications in computational biology and bioinformatics. Springer, London"},{"issue":"3","key":"9485_CR42","doi-asserted-by":"crossref","first-page":"258","DOI":"10.1016\/S0959-437X(00)00187-8","volume":"11","author":"PS Meltzer","year":"2001","unstructured":"Meltzer PS (2001) Spotting the target: microarrays for disease gene discovery. Curr Opin Genet Dev 11(3):258\u2013263","journal-title":"Curr Opin Genet Dev"},{"issue":"1","key":"9485_CR43","doi-asserted-by":"crossref","first-page":"12","DOI":"10.1186\/1755-8794-4-12","volume":"4","author":"A Mohammadi","year":"2011","unstructured":"Mohammadi A, Saraee M, Salehi M (2011) Identification of disease-causing genes using microarray data mining and gene ontology. BMC Med Genomics 4(1):12","journal-title":"BMC Med Genomics"},{"issue":"1","key":"9485_CR44","doi-asserted-by":"crossref","first-page":"35","DOI":"10.1186\/1752-0509-5-35","volume":"5","author":"S Nagaraj","year":"2011","unstructured":"Nagaraj S, Reverter A (2011) A Boolean-based systems biology approach to predict novel genes associated with cancer: application to colorectal cancer. BMC Syst Biol 5(1):35","journal-title":"BMC Syst Biol"},{"issue":"8","key":"9485_CR45","doi-asserted-by":"crossref","first-page":"1057","DOI":"10.1093\/bioinformatics\/btq076","volume":"26","author":"S Navlakha","year":"2010","unstructured":"Navlakha S, Kingsford C (2010) The power of protein interaction networks for associating genes with diseases. Bioinformatics 26(8):1057\u20131063","journal-title":"Bioinformatics"},{"issue":"3","key":"9485_CR46","doi-asserted-by":"crossref","first-page":"300","DOI":"10.1016\/j.compbiomed.2010.01.001","volume":"40","author":"KL Ng","year":"2010","unstructured":"Ng KL, Ciou JS, Huang CH (2010) Prediction of protein functions based on function\u2013function correlation relations. Comput Biol Med 40(3):300\u2013305","journal-title":"Comput Biol Med"},{"issue":"5","key":"9485_CR47","doi-asserted-by":"crossref","first-page":"e5526","DOI":"10.1371\/journal.pone.0005526","volume":"4","author":"D Nitsch","year":"2009","unstructured":"Nitsch D, Tranchevent LC, Thienpont B, Thorrez L, Van Esch H, Devriendt K, Moreau Y (2009) Network analysis of differential expression for the identification of disease-causing genes. PLoS ONE 4(5):e5526","journal-title":"PLoS ONE"},{"issue":"3","key":"9485_CR48","doi-asserted-by":"crossref","first-page":"324","DOI":"10.1165\/rcmb.2007-0151OC","volume":"38","author":"N Novershtern","year":"2008","unstructured":"Novershtern N, Itzhaki Z, Manor O, Friedman N, Kaminski N (2008) A functional and regulatory map of asthma. Am J Respir Cell Mol Biol 38(3):324\u2013336","journal-title":"Am J Respir Cell Mol Biol"},{"issue":"8","key":"9485_CR49","doi-asserted-by":"crossref","first-page":"691","DOI":"10.1136\/jmg.2006.041376","volume":"43","author":"M Oti","year":"2006","unstructured":"Oti M, Snel B, Huynen MA, Brunner HG (2006) Predicting disease genes using protein\u2013protein interactions. J Med Genet 43(8):691\u2013698","journal-title":"J Med Genet"},{"issue":"1","key":"9485_CR50","doi-asserted-by":"crossref","first-page":"266","DOI":"10.1186\/1471-2105-14-266","volume":"14","author":"S Paul","year":"2013","unstructured":"Paul S, Maji P (2013a) $$\\mu $$ \u03bc HEM for identification of differentially expressed miRNAs using hypercuboid equivalence partition matrix. BMC Bioinform 14(1):266","journal-title":"BMC Bioinform"},{"key":"9485_CR51","first-page":"63","volume":"8","author":"S Paul","year":"2013","unstructured":"Paul S, Maji P (2013b) Rough sets for insilico identification of differentially expressed miRNAs. Int J Nanomed 8:63\u201374","journal-title":"Int J Nanomed"},{"issue":"8","key":"9485_CR52","doi-asserted-by":"crossref","first-page":"1226","DOI":"10.1109\/TPAMI.2005.159","volume":"27","author":"H Peng","year":"2005","unstructured":"Peng H, Long F, Ding C (2005) Feature selection based on mutual information: criteria of max-dependency, max-relevance, and min-redundancy. IEEE Trans Pattern Anal Mach Intell 27(8):1226\u20131238","journal-title":"IEEE Trans Pattern Anal Mach Intell"},{"issue":"12","key":"9485_CR53","doi-asserted-by":"crossref","first-page":"1508","DOI":"10.1109\/TMI.2004.836872","volume":"23","author":"JPW Pluim","year":"2004","unstructured":"Pluim JPW, Maintz JBA, Viergever MA (2004) $$f$$ f -Information measures in medical image registration. IEEE Trans Med Imaging 23(12):1508\u20131516","journal-title":"IEEE Trans Med Imaging"},{"issue":"1","key":"9485_CR54","doi-asserted-by":"crossref","first-page":"68","DOI":"10.1111\/j.2517-6161.1949.tb00023.x","volume":"11","author":"MH Quenouille","year":"1949","unstructured":"Quenouille MH (1949) Approximate tests of correlation in time-series. J R Stat Soc Ser B Methodol 11(1):68\u201384","journal-title":"J R Stat Soc Ser B Methodol"},{"issue":"4","key":"9485_CR55","doi-asserted-by":"crossref","first-page":"530","DOI":"10.1016\/j.jbi.2007.11.006","volume":"41","author":"X Ruan","year":"2008","unstructured":"Ruan X, Wang J, Li H, Perozzi RE, Perozzi EF (2008) The use of logic relationships to model colon cancer gene expression networks with mRNA microarray data. J Biomed Inform 41(4):530\u2013543","journal-title":"J Biomed Inform"},{"issue":"12","key":"9485_CR56","doi-asserted-by":"crossref","first-page":"1263","DOI":"10.1158\/1541-7786.MCR-07-0267","volume":"5","author":"J Sabates-Bellver","year":"2007","unstructured":"Sabates-Bellver J, Van der Flier LG, de Palo M, Cattaneo E, Maake C, Rehrauer H, Laczko E, Kurowski MA, Bujnicki JM, Menigatti M, Luz J, Ranalli TV, Gomes V, Pastorelli A, Faggiani R, Anti M, Jiricny J, Clevers H, Marra G (2007) Transcriptome profile of human colorectal adenomas. Mol Cancer Res 5(12):1263\u20131275","journal-title":"Mol Cancer Res"},{"issue":"88","key":"9485_CR57","first-page":"1","volume":"3","author":"R Sharan","year":"2007","unstructured":"Sharan R, Ulitsky I, Shamir R (2007) Network-based prediction of protein function. Mol Syst Biol 3(88):1\u201313","journal-title":"Mol Syst Biol"},{"issue":"suppl 1","key":"9485_CR58","doi-asserted-by":"crossref","first-page":"D561","DOI":"10.1093\/nar\/gkq973","volume":"39","author":"D Szklarczyk","year":"2011","unstructured":"Szklarczyk D, Franceschini A, Kuhn M, Simonovic M, Roth A, Minguez P, Doerks T, Stark M, Muller J, Bork P, Jensen LJ (2011) The STRING database in 2011: functional interaction networks of proteins, globally integrated and scored. Nucl Acids Res 39(suppl 1):D561\u2013D568","journal-title":"Nucl Acids Res"},{"key":"9485_CR59","volume-title":"Theory of statistical inference and information","author":"I Vajda","year":"1989","unstructured":"Vajda I (1989) Theory of statistical inference and information. Kluwer, Dordrecht"},{"issue":"1","key":"9485_CR60","doi-asserted-by":"crossref","first-page":"182","DOI":"10.1186\/1471-2105-13-182","volume":"13","author":"C Wu","year":"2012","unstructured":"Wu C, Zhu J, Zhang X (2012) Integrating gene expression and protein\u2013protein interaction network to prioritize cancer-associated genes. BMC Bioinform 13(1):182","journal-title":"BMC Bioinform"},{"issue":"4","key":"9485_CR61","doi-asserted-by":"crossref","first-page":"417","DOI":"10.1093\/bib\/bbp063","volume":"11","author":"J Zhao","year":"2010","unstructured":"Zhao J, Jiang P, Zhang W (2010) Molecular networks for the study of TCM pharmacology. Brief Bioinform 11(4):417\u2013430","journal-title":"Brief Bioinform"},{"issue":"9","key":"9485_CR62","doi-asserted-by":"crossref","first-page":"e24,306","DOI":"10.1371\/journal.pone.0024306","volume":"6","author":"J Zhao","year":"2011","unstructured":"Zhao J, Yang TH, Huang Y, Holme P (2011) Ranking candidate disease genes from gene expression and protein interaction: a Katz-centrality based approach. PLoS ONE 6(9):e24,306","journal-title":"PLoS ONE"},{"issue":"1","key":"9485_CR63","doi-asserted-by":"crossref","first-page":"142","DOI":"10.1016\/j.jtbi.2011.06.006","volume":"284","author":"GP Zhou","year":"2011","unstructured":"Zhou GP (2011) The disposition of The LZCC protein residues in wenxiang diagram provides new insights into the protein\u2013protein interaction mechanism. J Theor Biol 284(1):142\u2013148","journal-title":"J Theor Biol"},{"key":"9485_CR64","doi-asserted-by":"crossref","first-page":"169","DOI":"10.1042\/bj2220169","volume":"222","author":"GP Zhou","year":"1984","unstructured":"Zhou GP, Deng MH (1984) An extension of Chou\u2019s graphic rules for deriving enzyme kinetic equations to systems involving parallel reaction pathways. Biochem J 222:169\u2013176","journal-title":"Biochem J"}],"container-title":["Natural Computing"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/s11047-015-9485-6.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/article\/10.1007\/s11047-015-9485-6\/fulltext.html","content-type":"text\/html","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/s11047-015-9485-6","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2024,6,7]],"date-time":"2024-06-07T01:44:18Z","timestamp":1717724658000},"score":1,"resource":{"primary":{"URL":"http:\/\/link.springer.com\/10.1007\/s11047-015-9485-6"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2015,2,7]]},"references-count":64,"journal-issue":{"issue":"3","published-print":{"date-parts":[[2016,9]]}},"alternative-id":["9485"],"URL":"https:\/\/doi.org\/10.1007\/s11047-015-9485-6","relation":{},"ISSN":["1567-7818","1572-9796"],"issn-type":[{"value":"1567-7818","type":"print"},{"value":"1572-9796","type":"electronic"}],"subject":[],"published":{"date-parts":[[2015,2,7]]}}}