{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2022,3,30]],"date-time":"2022-03-30T07:43:35Z","timestamp":1648626215111},"reference-count":23,"publisher":"Springer Science and Business Media LLC","issue":"3","license":[{"start":{"date-parts":[[2007,4,7]],"date-time":"2007-04-07T00:00:00Z","timestamp":1175904000000},"content-version":"tdm","delay-in-days":0,"URL":"http:\/\/www.springer.com\/tdm"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["J Supercomput"],"published-print":{"date-parts":[[2007,10,1]]},"DOI":"10.1007\/s11227-007-0121-9","type":"journal-article","created":{"date-parts":[[2007,4,6]],"date-time":"2007-04-06T15:52:16Z","timestamp":1175874736000},"page":"303-319","source":"Crossref","is-referenced-by-count":1,"title":["Efficient search algorithms for RNAi target detection"],"prefix":"10.1007","volume":"42","author":[{"given":"Shibin","family":"Qiu","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Terran","family":"Lane","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Cundong","family":"Yang","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"297","published-online":{"date-parts":[[2007,4,7]]},"reference":[{"key":"121_CR1","doi-asserted-by":"crossref","first-page":"403","DOI":"10.1016\/S0022-2836(05)80360-2","volume":"215","author":"SF Altschul","year":"1990","unstructured":"Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ (1990) Basic local alignment search tool. J\u00a0Mol Biol 215:403\u2013410","journal-title":"J\u00a0Mol Biol"},{"key":"121_CR2","doi-asserted-by":"crossref","first-page":"136","DOI":"10.1038\/432136b","volume":"432","author":"E Check","year":"2004","unstructured":"Check E (2004) Hopes rise for RNA therapy as mouse study hits target. Nature 432:136","journal-title":"Nature"},{"key":"121_CR3","doi-asserted-by":"crossref","first-page":"6289","DOI":"10.1073\/pnas.1232238100","volume":"100","author":"A Dillin","year":"2003","unstructured":"Dillin A (2003) The specifics of small interfering RNA specificity. Proc Nat Acad Sci USA 100:6289\u20136291","journal-title":"Proc Nat Acad Sci USA"},{"key":"121_CR4","doi-asserted-by":"crossref","first-page":"199","DOI":"10.1016\/S1046-2023(02)00023-3","volume":"26","author":"SM Elbashir","year":"2002","unstructured":"Elbashir SM, Harborth J, Weber K, Tuschl T (2002) Analysis of gene function in somatic mammalian cells using small interfering RNAs. Method 26:199\u2013213","journal-title":"Method"},{"issue":"23","key":"121_CR5","doi-asserted-by":"crossref","first-page":"6877","DOI":"10.1093\/emboj\/20.23.6877","volume":"20","author":"SM Elbashir","year":"2001","unstructured":"Elbashir SM, Martinez J, Patkaniowska A, Lendeckel W, Tuschl T (2001) Functional anatomy of siRNA for mediating efficient RNAi in Drosophila melanogaster embryo lysate. EMBO J 20(23):6877\u20136888","journal-title":"EMBO J"},{"issue":"6669","key":"121_CR6","doi-asserted-by":"crossref","first-page":"806","DOI":"10.1038\/35888","volume":"391","author":"A Fire","year":"1998","unstructured":"Fire A, Xu SQ, Montgomery MK, Kostas SA, Driver SE, Mello CC (1998) Potent and specific genetic interference by double-stranded RNA in Caenorhabditis elegans. Nature 391(6669):806\u2013811","journal-title":"Nature"},{"issue":"7","key":"121_CR7","doi-asserted-by":"crossref","first-page":"727","DOI":"10.1109\/TVLSI.2004.830918","volume":"12","author":"A Halaas","year":"2004","unstructured":"Halaas A, Svingen B, Nedland M, S\u00e6trom P, Sn\u00f8ve O Jr, Birkeland OR (2004) A recursive MISD architecture for pattern matching. IEEE Trans Very Larg Scale Integr Syst 12(7):727\u2013734","journal-title":"IEEE Trans Very Larg Scale Integr Syst"},{"issue":"Suppl 2","key":"121_CR8","doi-asserted-by":"crossref","first-page":"ii73","DOI":"10.1093\/bioinformatics\/btg1063","volume":"19","author":"Y Horesh","year":"2003","unstructured":"Horesh Y, Amir A, Michaeli S, Unger R (2003) A rapid method for detection of putative RNAi target genes in genomic data. Bioinf 19(Suppl 2):ii73\u2013ii80","journal-title":"Bioinf"},{"issue":"6","key":"121_CR9","doi-asserted-by":"crossref","first-page":"635","DOI":"10.1038\/nbt831","volume":"21","author":"AL Jackson","year":"2003","unstructured":"Jackson AL, Bartz SR, Schelter J, Kobayashi SV, Burchard J, Mao M, Li B, Cavet G, Linsley PS (2003) Expression profiling reveals off-target gene regulation by RNAi. Nature Biotechnol 21(6):635\u2013637","journal-title":"Nature Biotechnol"},{"key":"121_CR10","doi-asserted-by":"crossref","first-page":"209","DOI":"10.1016\/S0092-8674(03)00801-8","volume":"115","author":"A Khvorova","year":"2003","unstructured":"Khvorova A, Reynolds A, Jayasena SD (2003) Functional siRNAs and miRNAs exhibit strand bias. Cell 115:209\u2013216","journal-title":"Cell"},{"issue":"1","key":"121_CR11","doi-asserted-by":"crossref","first-page":"323","DOI":"10.1137\/0206024","volume":"6","author":"DE Knuth","year":"1977","unstructured":"Knuth DE, Morris JH, Pratt VR (1977) Fast pattern matching in strings. SIAM J Comput 6(1):323\u2013350","journal-title":"SIAM J Comput"},{"key":"121_CR12","unstructured":"Leslie C, Eskin E, Noble WS (2002) The spectrum kernel: a string kernel for SVM protein classification. In: Proceedings of the pacific symposium on bioinformatics, 2002, pp 564\u2013575"},{"key":"121_CR13","doi-asserted-by":"crossref","first-page":"787","DOI":"10.1016\/S0092-8674(03)01018-3","volume":"115","author":"BP Lewis","year":"2003","unstructured":"Lewis BP, Shih I-H, Jones-Rhoades MWW, Bartel DP, Burge CB (2003) Prediction of mammalian microRNA targets. Cell 115:787\u2013798","journal-title":"Cell"},{"key":"121_CR14","doi-asserted-by":"crossref","first-page":"1540","DOI":"10.1126\/science.1080372","volume":"299","author":"LP Lim","year":"2003","unstructured":"Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP (2003) Vertebrate microRNA genes. Sci 299:1540","journal-title":"Sci"},{"key":"121_CR15","first-page":"419","volume":"2","author":"H Lodhi","year":"2002","unstructured":"Lodhi H, Saunders C, Shawe-Taylor J, Cristianini N, Watkins C (2002) Text classification using string kernels. J Mach Learn Res 2:419\u2013444","journal-title":"J Mach Learn Res"},{"key":"121_CR16","doi-asserted-by":"crossref","first-page":"443","DOI":"10.1016\/0022-2836(70)90057-4","volume":"48","author":"SB Needleman","year":"1970","unstructured":"Needleman SB, Wunsch CD (1970) J Mol Biol 48:443\u2013453","journal-title":"J Mol Biol"},{"key":"121_CR17","doi-asserted-by":"crossref","first-page":"1834","DOI":"10.1093\/nar\/gki324","volume":"33","author":"S Qiu","year":"2005","unstructured":"Qiu S, Adema CM, Lane T (2005) A computational study of off-target effects of RNA interference. Nucl Acid Res 33:1834\u20131847","journal-title":"Nucl Acid Res"},{"issue":"2","key":"121_CR18","doi-asserted-by":"crossref","first-page":"132","DOI":"10.1504\/IJBRA.2006.009764","volume":"2","author":"S Qiu","year":"2006","unstructured":"Qiu S, Lane T (2006) RNA string kernels for RNAi off-target evaluation. Int J Bioinf Res Appl (IJBRA) 2(2):132\u2013146","journal-title":"Int J Bioinf Res Appl (IJBRA)"},{"issue":"45","key":"121_CR19","doi-asserted-by":"crossref","first-page":"44312","DOI":"10.1074\/jbc.M307089200","volume":"278","author":"S Saxena","year":"2003","unstructured":"Saxena S, Jonsson ZO, Dutta A (2003) Small RNAs with imperfect match to endogenous mRNA repress translation. J Biol Chem 278(45):44312\u201344319","journal-title":"J Biol Chem"},{"key":"121_CR20","doi-asserted-by":"crossref","unstructured":"Smith TF, Waterman MS (1981) J Mol Biol 147(1):195\u2013197","DOI":"10.1016\/0022-2836(81)90087-5"},{"key":"121_CR21","doi-asserted-by":"crossref","first-page":"256","DOI":"10.1016\/j.bbrc.2004.04.175","volume":"319","author":"O Sn\u00f8ve Jr","year":"2004","unstructured":"Sn\u00f8ve O Jr, Holen T (2004) Many commonly used siRNAs risk off-target activity. Biochem Biophys Res Commun 319:256\u2013263","journal-title":"Biochem Biophys Res Commun"},{"key":"121_CR22","doi-asserted-by":"crossref","first-page":"3191","DOI":"10.1101\/gad.13.24.3191","volume":"13","author":"T Tuschl","year":"1999","unstructured":"Tuschl T, Zamore PD, Lehmann R, Bartel DP, Sharp PA (1999) Targeted mRNA degradation by double-stranded RNA in vitro. Genes Dev 13:3191\u20133197","journal-title":"Genes Dev"},{"key":"121_CR23","unstructured":"Vapnik VN (1998) Statistical learning theory. Wiley"}],"container-title":["The Journal of Supercomputing"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/s11227-007-0121-9.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/article\/10.1007\/s11227-007-0121-9\/fulltext.html","content-type":"text\/html","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/s11227-007-0121-9","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2019,6,1]],"date-time":"2019-06-01T10:23:55Z","timestamp":1559384635000},"score":1,"resource":{"primary":{"URL":"http:\/\/link.springer.com\/10.1007\/s11227-007-0121-9"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2007,4,7]]},"references-count":23,"journal-issue":{"issue":"3","published-print":{"date-parts":[[2007,10,1]]}},"alternative-id":["121"],"URL":"https:\/\/doi.org\/10.1007\/s11227-007-0121-9","relation":{},"ISSN":["0920-8542","1573-0484"],"issn-type":[{"value":"0920-8542","type":"print"},{"value":"1573-0484","type":"electronic"}],"subject":[],"published":{"date-parts":[[2007,4,7]]}}}