{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,9,30]],"date-time":"2025-09-30T04:29:05Z","timestamp":1759206545165},"reference-count":13,"publisher":"Springer Science and Business Media LLC","issue":"5","license":[{"start":{"date-parts":[[2014,12,31]],"date-time":"2014-12-31T00:00:00Z","timestamp":1419984000000},"content-version":"unspecified","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by\/4.0"}],"content-domain":{"domain":["link.springer.com"],"crossmark-restriction":false},"short-container-title":["J Supercomput"],"published-print":{"date-parts":[[2015,5]]},"DOI":"10.1007\/s11227-014-1362-z","type":"journal-article","created":{"date-parts":[[2014,12,30]],"date-time":"2014-12-30T09:43:48Z","timestamp":1419932628000},"page":"1833-1845","update-policy":"http:\/\/dx.doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":1,"title":["Recovering accuracy methods for scalable consistency library"],"prefix":"10.1007","volume":"71","author":[{"given":"Jordi","family":"Llad\u00f3s","sequence":"first","affiliation":[]},{"given":"Fernando","family":"Guirado","sequence":"additional","affiliation":[]},{"given":"Fernando","family":"Cores","sequence":"additional","affiliation":[]},{"given":"Josep Llu\u00eds","family":"L\u00e9rida","sequence":"additional","affiliation":[]},{"given":"Cedric","family":"Notredame","sequence":"additional","affiliation":[]}],"member":"297","published-online":{"date-parts":[[2014,12,31]]},"reference":[{"issue":"1","key":"1362_CR1","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1186\/1748-7188-5-21","volume":"5","author":"G Blackshields","year":"2010","unstructured":"Blackshields G, Sievers F, Shi W, Wilm A, Higgins D (2010) Sequence embedding for fast construction of guide trees for multiple sequence alignment. Algorithms Mol Biol 5(1):1\u201311","journal-title":"Algorithms Mol Biol"},{"issue":"2","key":"1362_CR2","doi-asserted-by":"crossref","first-page":"330","DOI":"10.1101\/gr.2821705","volume":"15","author":"C Do","year":"2005","unstructured":"Do C, Mahabhashyam M, Brudno M, Batzoglou S (2005) ProbCons: Probabilistic consistency-based multiple sequence alignment. Genome Res 15(2):330\u2013340","journal-title":"Genome Res"},{"issue":"4","key":"1362_CR3","doi-asserted-by":"crossref","first-page":"772","DOI":"10.1093\/molbev\/mst010","volume":"30","author":"K Katoh","year":"2013","unstructured":"Katoh K, Standley D (2013) Mafft multiple sequence alignment software v. 7: Improvements in performance and usability. Mol Biol Evol 30(4):772\u2013780","journal-title":"Mol Biol Evol"},{"issue":"21","key":"1362_CR4","doi-asserted-by":"crossref","first-page":"2947","DOI":"10.1093\/bioinformatics\/btm404","volume":"23","author":"M Larkin","year":"2007","unstructured":"Larkin M, Blackshields G, Brown N, Chenna R, McGettigan P, McWilliam H, Valentin F, Wallace I, Wilm A, Lopez R, Thompson J, Gibson T, Higgins D (2007) Clustal w and clustal x version 2.0. Bioinformatics 23(21):2947\u20132948","journal-title":"Bioinformatics"},{"key":"1362_CR5","doi-asserted-by":"crossref","unstructured":"Liu K, Linder CR, Warnow T (2010) Multiple sequence alignment: a major challenge to large-scale phylogenetics. PLoS Curr Tree Life. doi: 10.1371\/currents.RRN1198","DOI":"10.1371\/currents.RRN1198"},{"issue":"1","key":"1362_CR6","doi-asserted-by":"crossref","first-page":"90","DOI":"10.1093\/sysbio\/syr095","volume":"61","author":"K Liu","year":"2012","unstructured":"Liu K, Warnow TJ, Holder MT, Nelesen SM, Yu J, Stamatakis AP, Linder CR (2012) Sat\u00e9-ii: Very fast and accurate simultaneous estimation of multiple sequence alignments and phylogenetic trees. Syst Biol 61(1):90\u2013106","journal-title":"Syst Biol"},{"issue":"1","key":"1362_CR7","doi-asserted-by":"crossref","first-page":"205","DOI":"10.1006\/jmbi.2000.4042","volume":"302","author":"C Notredame","year":"2000","unstructured":"Notredame C, Higgins D, Heringa J (2000) T-Coffee: a novel method for fast and accurate multiple sequence alignment. J Mol Biol 302(1):205\u2013217","journal-title":"J Mol Biol"},{"issue":"5","key":"1362_CR8","doi-asserted-by":"crossref","first-page":"407","DOI":"10.1093\/bioinformatics\/14.5.407","volume":"14","author":"C Notredame","year":"1998","unstructured":"Notredame C, Holm L, Higgins DG (1998) Coffee: an objective function for multiple sequence alignments. Bioinformatics 14(5):407\u2013422","journal-title":"Bioinformatics"},{"key":"1362_CR9","doi-asserted-by":"crossref","unstructured":"Orobitg M, Cores F, Guirado F, Kemena C, Notredame C, Ripoll A (2012) Enhancing the scalability of consistency-based progressive multiple sequences alignment applications. In: IEEE 26th International Parallel Distributed Processing Symposium, pp 71\u201382","DOI":"10.1109\/IPDPS.2012.17"},{"issue":"8","key":"1362_CR10","doi-asserted-by":"crossref","first-page":"989","DOI":"10.1093\/bioinformatics\/btt093","volume":"29","author":"F Sievers","year":"2013","unstructured":"Sievers F, Dineen D, Wilm A, Higgins DG (2013) Making automated multiple alignments of very large numbers of protein sequences. Bioinformatics 29(8):989\u2013995","journal-title":"Bioinformatics"},{"key":"1362_CR11","doi-asserted-by":"crossref","unstructured":"Sievers F, Wilm A, Dineen D, Gibson T, Karplus K, Li W, Lopez R, McWilliam H, Remmert M, Soding J, Thompson J, Higgins D (2011) Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega. Mol Syst Biol 7:539","DOI":"10.1038\/msb.2011.75"},{"issue":"1","key":"1362_CR12","doi-asserted-by":"crossref","first-page":"87","DOI":"10.1093\/bioinformatics\/15.1.87","volume":"15","author":"J Thompson","year":"1999","unstructured":"Thompson J, Plewniak F, Poch O (1999) BAliBASE: a benchmark alignment database for the evaluation of multiple alignment programs. Bioinformatics 15(1):87\u201388","journal-title":"Bioinformatics"},{"issue":"4","key":"1362_CR13","doi-asserted-by":"crossref","first-page":"1108","DOI":"10.1109\/TCBB.2009.68","volume":"8","author":"LS Wang","year":"2011","unstructured":"Wang LS, Leebens-Mack J, Wall PK, Beckmann K, dePamphilis CW, Warnow T (2011) The impact of multiple protein sequence alignment on phylogenetic estimation. IEEE\/ACM Trans Comput Biol Bioinform 8(4):1108\u20131119","journal-title":"IEEE\/ACM Trans Comput Biol Bioinform"}],"container-title":["The Journal of Supercomputing"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/s11227-014-1362-z.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/article\/10.1007\/s11227-014-1362-z\/fulltext.html","content-type":"text\/html","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/s11227-014-1362-z","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2019,3,26]],"date-time":"2019-03-26T19:15:05Z","timestamp":1553627705000},"score":1,"resource":{"primary":{"URL":"http:\/\/link.springer.com\/10.1007\/s11227-014-1362-z"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2014,12,31]]},"references-count":13,"journal-issue":{"issue":"5","published-print":{"date-parts":[[2015,5]]}},"alternative-id":["1362"],"URL":"https:\/\/doi.org\/10.1007\/s11227-014-1362-z","relation":{},"ISSN":["0920-8542","1573-0484"],"issn-type":[{"value":"0920-8542","type":"print"},{"value":"1573-0484","type":"electronic"}],"subject":[],"published":{"date-parts":[[2014,12,31]]}}}