{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,2,21]],"date-time":"2025-02-21T07:38:55Z","timestamp":1740123535378,"version":"3.37.3"},"reference-count":67,"publisher":"Springer Science and Business Media LLC","issue":"12","license":[{"start":{"date-parts":[[2016,6,10]],"date-time":"2016-06-10T00:00:00Z","timestamp":1465516800000},"content-version":"unspecified","delay-in-days":0,"URL":"http:\/\/www.springer.com\/tdm"}],"content-domain":{"domain":["link.springer.com"],"crossmark-restriction":false},"short-container-title":["J Supercomput"],"published-print":{"date-parts":[[2016,12]]},"DOI":"10.1007\/s11227-016-1753-4","type":"journal-article","created":{"date-parts":[[2016,6,10]],"date-time":"2016-06-10T03:54:20Z","timestamp":1465530860000},"page":"4696-4717","update-policy":"https:\/\/doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":7,"title":["Performance comparison of sequential and parallel compression applications for DNA raw data"],"prefix":"10.1007","volume":"72","author":[{"ORCID":"https:\/\/orcid.org\/0000-0001-6842-5273","authenticated-orcid":false,"given":"An\u00edbal","family":"Guerra","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-4896-2677","authenticated-orcid":false,"given":"Jaime","family":"Lotero","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-4487-7624","authenticated-orcid":false,"given":"Sebasti\u00e1n","family":"Isaza","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"297","published-online":{"date-parts":[[2016,6,10]]},"reference":[{"key":"1753_CR1","doi-asserted-by":"publisher","unstructured":"Deorowicz S (2013) Grabowski S (2013) Data compression for sequencing data. Algorithms for molecular biology: AMB 8(1):25. doi: 10.1186\/1748-7188-8-25 . http:\/\/www.almob.org\/content\/8\/1\/25","DOI":"10.1186\/1748-7188-8-25"},{"key":"1753_CR2","doi-asserted-by":"publisher","unstructured":"Loh PR, Baym M, Berger B (2012) Compressive genomics. Nat Biotechnol 30(7):627\u201330. doi: 10.1038\/nbt.2241 . http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/22781691","DOI":"10.1038\/nbt.2241"},{"key":"1753_CR3","unstructured":"RAID Incorporated (2015) Storing and managing petabytes of genome sequencing data. Tech. rep. http:\/\/webinfo.raidinc.com\/storing-and-managing-petabytes-of-genome-sequencing-data [Online]. Accessed on 23 March 2015"},{"key":"1753_CR4","doi-asserted-by":"publisher","unstructured":"Brandon MC, Wallace DC, Baldi P (2009) Data structures and compression algorithms for genomic sequence data. Bioinformatics (Oxford, England) 25(14):1731\u20131738. doi: 10.1093\/bioinformatics\/btp319 . http:\/\/www.pubmedcentral.nih.gov\/articlerender.fcgi?artid=2705231&tool=pmcentrez&rendertype=abstract","DOI":"10.1093\/bioinformatics\/btp319"},{"key":"1753_CR5","doi-asserted-by":"publisher","unstructured":"Baxevanis Andreas D, Ouellette Francis BF (2004) Bioinformatics: a practical guide to the analysis of genes and proteins, 2nd edn. doi: 10.1007\/s10439-006-9105-9","DOI":"10.1007\/s10439-006-9105-9"},{"key":"1753_CR6","unstructured":"Format specification (FASTQ) (2014) http:\/\/maq.sourceforge.net\/fastq.shtml [Online]. Accessed on 23 Sept 2014"},{"issue":"23","key":"1753_CR7","doi-asserted-by":"publisher","first-page":"2959","DOI":"10.1093\/bioinformatics\/btt525","volume":"29","author":"M Howison","year":"2013","unstructured":"Howison M, Zapata F, Dunn CW (2013) Toward a statistically explicit understanding of de novo sequence assembly. Bioinformatics 29(23):2959\u20132963. doi: 10.1093\/bioinformatics\/btt525","journal-title":"Bioinformatics"},{"issue":"10","key":"1753_CR8","doi-asserted-by":"publisher","first-page":"1135","DOI":"10.1038\/nbt1486","volume":"26","author":"J Shendure","year":"2008","unstructured":"Shendure J, Ji H (2008) Next-generation DNA sequencing. Nat Biotechnol 26(10):1135\u20131145. doi: 10.1038\/nbt1486","journal-title":"Nat Biotechnol"},{"issue":"3","key":"1753_CR9","doi-asserted-by":"publisher","first-page":"72","DOI":"10.5923\/j.bioinformatics.20130303.04","volume":"3","author":"NS Bakr","year":"2013","unstructured":"Bakr NS, Sharawi AA (2013) DNA lossless compression algorithms: review. Am J Bioinform Res 3(3):72\u201381. doi: 10.5923\/j.bioinformatics.20130303.04","journal-title":"Am J Bioinform Res"},{"key":"1753_CR10","unstructured":"1000 Genomes (2014) A deep catalog of human genetic variation. http:\/\/www.1000genomes.org [Online]. Accessed on 03 Oct 2014"},{"key":"1753_CR11","unstructured":"Encyclopedia of DNA Elements (ENCODE) (2014) http:\/\/www.encodeproject.org\/ [Online]. Accessed on 03 Oct 2014"},{"key":"1753_CR12","unstructured":"Genomics England (2014). http:\/\/www.genomicsengland.co.uk [Online]. Accessed on 03 Oct 2014"},{"key":"1753_CR13","unstructured":"ICGC Cancer Genome Projects (2014) https:\/\/icgc.org\/ [Online]. Accessed on 03 Oct 2014"},{"key":"1753_CR14","unstructured":"Wandelt S, Bux M, Leser U (2013) Trends in genome compression. Curr Bioinform 1\u201324 . https:\/\/edit.rok.informatik.hu-berlin.de\/wbi\/research\/publications\/2013\/2013-cbio.pdf"},{"key":"1753_CR15","doi-asserted-by":"crossref","unstructured":"Kaipa KK, Lee K, Ahn T, Narayanan R (2010) System for random access dna sequence compression. IEEE international conference on bioinformatics and biomedicine workshops system, pp 853\u2013854. http:\/\/ieeexplore.ieee.org\/xpls\/abs_all.jsp?arnumber=5703942","DOI":"10.1109\/BIBMW.2010.5703942"},{"key":"1753_CR16","doi-asserted-by":"crossref","unstructured":"Ziv J, Lempel A (1977) A universal algorithm for sequential data compression. IEEE Trans Inf Theory I(3):337\u2013338","DOI":"10.1109\/TIT.1977.1055714"},{"issue":"5","key":"1753_CR17","doi-asserted-by":"crossref","first-page":"530","DOI":"10.1109\/TIT.1978.1055934","volume":"24","author":"J Ziv","year":"1978","unstructured":"Ziv J, Lempel A (1978) Compression of individual sequences via variable-rate coding. IEEE Trans Inf Theory 24(5):530\u2013536","journal-title":"IEEE Trans Inf Theory"},{"key":"1753_CR18","first-page":"1098,1101","volume":"27","author":"DA Huffman","year":"1952","unstructured":"Huffman DA (1952) A method for the construction of minimum-redundancy codes. Proc IRE 27:1098,1101","journal-title":"Proc IRE"},{"issue":"22","key":"1753_CR19","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1093\/nar\/gks754","volume":"40","author":"DC Jones","year":"2012","unstructured":"Jones DC, Ruzzo WL, Peng X, Katze MG (2012) Compression of next-generation sequencing reads aided by highly efficient de novo assembly. Nucl Acids Res 40(22):1\u20139. doi: 10.1093\/nar\/gks754","journal-title":"Nucl Acids Res"},{"issue":"4","key":"1753_CR20","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1093\/nar\/gkr1124","volume":"40","author":"AJ Pinho","year":"2012","unstructured":"Pinho AJ, Pratas D, Garcia SP (2012) GReEn: a tool for efficient compression of genome resequencing data. Nucl Acids Res 40(4):1\u20138. doi: 10.1093\/nar\/gkr1124","journal-title":"Nucl Acids Res"},{"issue":"2","key":"1753_CR21","doi-asserted-by":"publisher","first-page":"274","DOI":"10.1093\/bioinformatics\/btn582","volume":"25","author":"S Christley","year":"2009","unstructured":"Christley S, Lu Y, Li C, Xie X (2009) Human genomes as email attachments. Bioinformatics 25(2):274\u2013275. doi: 10.1093\/bioinformatics\/btn582","journal-title":"Bioinformatics"},{"key":"1753_CR22","doi-asserted-by":"publisher","unstructured":"Chen X, Kwong S, Li M (2001) A compression algorithm for DNA sequences. IEEE engineering in medicine and biology magazine 20:61\u201366. doi: 10.1109\/51.940049 . http:\/\/ieeexplore.ieee.org\/lpdocs\/epic03\/wrapper.htm?arnumber=940049","DOI":"10.1109\/51.940049"},{"key":"1753_CR23","unstructured":"Chen X, Kwong S, Li M (1999) A compression algorithm for DNA sequences and its applications in genome comparison. Genome informatics. Workshop on genome informatics 10:51\u201361 http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/11072342"},{"key":"1753_CR24","doi-asserted-by":"crossref","unstructured":"Stephane G, Tahi F (1994) A new challenge for compression algorithms: genetic sequences. Inf Process Manage 30:875\u2013886. https:\/\/hal.archives-ouvertes.fr\/file\/index\/docid\/180949\/filename\/grumbach.pdf","DOI":"10.1016\/0306-4573(94)90014-0"},{"issue":"3","key":"1753_CR25","doi-asserted-by":"publisher","first-page":"390","DOI":"10.1093\/bib\/bbt088","volume":"15","author":"R Giancarlo","year":"2014","unstructured":"Giancarlo R, Rombo SE, Utro F (2014) Compressive biological sequence analysis and archival in the era of high-throughput sequencing technologies. Brief Bioinform 15(3):390\u2013406. doi: 10.1093\/bib\/bbt088","journal-title":"Brief Bioinform"},{"key":"1753_CR26","doi-asserted-by":"publisher","first-page":"43","DOI":"10.11234\/gi1990.11.43","volume":"11","author":"T Matsumoto","year":"2000","unstructured":"Matsumoto T, Sadakane K, Imai H (2000) Biological sequence compression algorithms. Genome Inf 11:43\u201352. doi: 10.11234\/gi1990.11.43","journal-title":"Genome Inf"},{"key":"1753_CR27","doi-asserted-by":"publisher","unstructured":"Deorowicz S, Grabowski S (2011) Compression of DNA sequence reads in FASTQ format. Bioinformatics 27(6):860\u2013862. doi: 10.1093\/bioinformatics\/btr014 . http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/21252073","DOI":"10.1093\/bioinformatics\/btr014"},{"key":"1753_CR28","doi-asserted-by":"publisher","unstructured":"Bhola V, Bopardikar AS, Narayanan R, Lee K, Ahn T (2011) No-reference compression of genomic data stored in FASTQ format. Proceedings\u20142011 IEEE international conference on bioinformatics and biomedicine, BIBM 2011, pp 147\u2013150. doi: 10.1109\/BIBM.2011.110","DOI":"10.1109\/BIBM.2011.110"},{"key":"1753_CR29","doi-asserted-by":"publisher","unstructured":"Yanovsky V (2011) ReCoil\u2014an algorithm for compression of extremely large datasets of dna data. Algorithms Mol Biol 6(1):23. doi: 10.1186\/1748-7188-6-23 . http:\/\/www.pubmedcentral.nih.gov\/articlerender.fcgi?artid=3219593&tool=pmcentrez&rendertype=abstractwww.almob.org\/content\/6\/1\/23","DOI":"10.1186\/1748-7188-6-23"},{"key":"1753_CR30","doi-asserted-by":"publisher","unstructured":"Mohammed MH, Dutta A, Bose T, Chadaram S, Mande SS (2012) DELIMINATE\u2014a fast and efficient method for loss-less compression of genomic sequences: sequence analysis. Bioinformatics (Oxford, England) 28(19):2527\u20139. doi: 10.1093\/bioinformatics\/bts467 . http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/22833526","DOI":"10.1093\/bioinformatics\/bts467"},{"issue":"6","key":"1753_CR31","doi-asserted-by":"publisher","first-page":"1837","DOI":"10.1109\/TCBB.2012.123","volume":"9","author":"E Grassi","year":"2012","unstructured":"Grassi E, Gregorio FD, Molineris I (2012) KungFQ: a simple and powerful approach to compress fastq files. IEEE\/ACM Trans Comput Biol Bioinform 9(6):1837\u20131842. doi: 10.1109\/TCBB.2012.123","journal-title":"IEEE\/ACM Trans Comput Biol Bioinform"},{"issue":"3","key":"1753_CR32","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1371\/journal.pone.0059190","volume":"8","author":"JK Bonfield","year":"2013","unstructured":"Bonfield JK, Mahoney MV (2013) Compression of FASTQ and SAM format sequencing data. PLoS ONE 8(3):1\u201311. doi: 10.1371\/journal.pone.0059190","journal-title":"PLoS ONE"},{"key":"1753_CR33","doi-asserted-by":"publisher","unstructured":"Roguski L, Deorowicz S (2014) DSRC 2\u2014industry oriented compression of FASTQ files. Bioinformatics 30(15):2213\u20132215. doi: 10.1093\/bioinformatics\/btu208 . http:\/\/bioinformatics.oxfordjournals.org\/content\/30\/15\/2213","DOI":"10.1093\/bioinformatics\/btu208"},{"key":"1753_CR34","doi-asserted-by":"publisher","unstructured":"Sardaraz M, Tahir M, Ikram AA. Advances in high throughput dna sequence data compression. J Bioinform Comput Biol 0(0):1630,002(0). doi: 10.1142\/S0219720016300021 . http:\/\/www.worldscientific.com\/doi\/abs\/10.1142\/S0219720016300021 . (PMID: 26846812)","DOI":"10.1142\/S0219720016300021"},{"key":"1753_CR35","doi-asserted-by":"publisher","unstructured":"Zhu Z, Zhang Y, Ji Z, He S, Yang X (2013) High-throughput DNA sequence data compression. Brief Bioinform 16(1). doi: 10.1093\/bib\/bbt087 . http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/24300111","DOI":"10.1093\/bib\/bbt087"},{"key":"1753_CR36","unstructured":"Adler, M.: PIGZ Documentation. http:\/\/zlib.net\/pigz\/pigz.pdf . [Online; accessed: 2014-12-03]"},{"key":"1753_CR37","doi-asserted-by":"publisher","unstructured":"Cox AJ, Bauer MJ, Jakobi T, Rosone G (2012) Large-scale compression of genomic sequence databases with the burrows-wheeler transform. Bioinformatics (Oxford, England) 28(11):1415\u20131419. doi: 10.1093\/bioinformatics\/bts173 . http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/22556365","DOI":"10.1093\/bioinformatics\/bts173"},{"issue":"03","key":"1753_CR38","doi-asserted-by":"crossref","first-page":"1541,003","DOI":"10.1142\/S0219720015410036","volume":"13","author":"A Dutta","year":"2015","unstructured":"Dutta A, Haque MM, Bose T, Reddy C, Mande SS (2015) Fqc: a novel approach for efficient compression, archival, and dissemination of fastq datasets. J Bioinform Comput Biol 13(03):1541,003","journal-title":"J Bioinform Comput Biol"},{"key":"1753_CR39","doi-asserted-by":"publisher","unstructured":"Hach F, Numanagic I, Alkan C, Sahinalp SC, Numanagi\u0107 I, Alkan C, Sahinalp SC (2012) SCALCE: boosting sequence compression algorithms using locally consistent encoding. Bioinformatics 28(23):3051\u20137. doi: 10.1093\/bioinformatics\/bts593 . http:\/\/www.pubmedcentral.nih.gov\/articlerender.fcgi?artid=3509486&tool=pmcentrez&rendertype=abstract","DOI":"10.1093\/bioinformatics\/bts593"},{"issue":"1","key":"1753_CR40","doi-asserted-by":"publisher","first-page":"213","DOI":"10.1109\/TCBB.2012.160","volume":"10","author":"M Howison","year":"2013","unstructured":"Howison M (2013) High-throughput compression of FASTQ data with SeqDB. IEEE\/ACM Trans Comput Biol Bioinform 10(1):213\u2013218. doi: 10.1109\/TCBB.2012.160","journal-title":"IEEE\/ACM Trans Comput Biol Bioinform"},{"key":"1753_CR41","doi-asserted-by":"publisher","unstructured":"Janin L, Schulz-Trieglaff O, Cox AJ (2014) BEETL-fastq: a searchable compressed archive for DNA reads. Bioinformatics (Oxford, England) 1\u20136. doi: 10.1093\/bioinformatics\/btu387 . http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/24950811","DOI":"10.1093\/bioinformatics\/btu387"},{"key":"1753_CR42","unstructured":"Linux man page (2014) Pbzip2: parallel bzip2 file compressor. http:\/\/linux.die.net\/man\/1\/pbzip2 [Online]. Accessed on 03 Dec 2014"},{"issue":"20","key":"1753_CR43","doi-asserted-by":"publisher","first-page":"3276","DOI":"10.1093\/bioinformatics\/btv384","volume":"31","author":"M Nicolae","year":"2015","unstructured":"Nicolae M, Pathak S, Rajasekaran S (2015) LFQC: a lossless compression algorithm for FASTQ files. Bioinformatics 31(20):3276\u20133281. doi: 10.1093\/bioinformatics\/btv384","journal-title":"Bioinformatics"},{"key":"1753_CR44","unstructured":"Oberhumer M (2015) Lzo real-time data compression library. http:\/\/www.oberhumer.com\/opensource\/lzo\/ [Online]. Accessed on 03 March 2016"},{"key":"1753_CR45","unstructured":"Pavlov I (2016) 7-zip. http:\/\/www.7-zip.org [Online]. Accessed on 03 March 2016"},{"key":"1753_CR46","unstructured":"WinRAR archiver, a powerful tool to process RAR and ZIP files. http:\/\/www.rarlab.com\/ [Online]. Accessed on 03 Dec 2014"},{"issue":"1","key":"1753_CR47","doi-asserted-by":"publisher","first-page":"75","DOI":"10.1016\/j.gene.2015.12.053","volume":"579","author":"Y Zhang","year":"2015","unstructured":"Zhang Y, Patel K, Endrawis T, Bowers A, Sun Y (2015) A FASTQ compressor based on integer-mapped k-mer indexing for biologist. Gene 579(1):75\u201381. doi: 10.1016\/j.gene.2015.12.053","journal-title":"Gene"},{"key":"1753_CR48","doi-asserted-by":"publisher","unstructured":"Zhan X, Yao D (2014) A novel method to compress high-throughput dna sequence read archive. In: Software intelligence technologies and applications international conference on frontiers of internet of things 2014, international conference on, pp 58\u201361. doi: 10.1049\/cp.2014.1536","DOI":"10.1049\/cp.2014.1536"},{"key":"1753_CR49","doi-asserted-by":"publisher","unstructured":"Daily K, Rigor P, Christley S, Xie X, Baldi P (2010) Data structures and compression algorithms for high-throughput sequencing technologies. BMC bioinformatics 11(1):514. doi: 10.1186\/1471-2105-11-514 . http:\/\/www.pubmedcentral.nih.gov\/articlerender.fcgi?artid=2964686&tool=pmcentrez&rendertype=abstract","DOI":"10.1186\/1471-2105-11-514"},{"key":"1753_CR50","doi-asserted-by":"crossref","unstructured":"Guo G, Qiu S, Ye Z, Wang B, Fang L, Lu M, See S, Mao R (2013) GPU-accelerated adaptive compression framework for genomics data. 2013 IEEE international conference on big data GPU-accelerated, pp 181\u2013186","DOI":"10.1109\/BigData.2013.6691572"},{"key":"1753_CR51","doi-asserted-by":"publisher","unstructured":"Kozanitis C, Saunders C, Kruglyak S, Bafna V, Varghese G (2011) Compressing genomic sequence fragments using SlimGene. J Comput Biol 18(3):401\u201313. doi: 10.1089\/cmb.2010.0253 . http:\/\/www.pubmedcentral.nih.gov\/articlerender.fcgi?artid=3123913&tool=pmcentrez&rendertype=abstract","DOI":"10.1089\/cmb.2010.0253"},{"issue":"12","key":"1753_CR52","doi-asserted-by":"publisher","first-page":"2","DOI":"10.1371\/journal.pone.0028251","volume":"6","author":"MN Sakib","year":"2011","unstructured":"Sakib MN, Tang J, Zheng WJ, Huang CT (2011) Improving transmission efficiency of large sequence alignment\/map (SAM) files. PLoS ONE 6(12):2\u20135. doi: 10.1371\/journal.pone.0028251","journal-title":"PLoS ONE"},{"key":"1753_CR53","doi-asserted-by":"publisher","unstructured":"Vey G (2009) Differential direct coding: a compression algorithm for nucleotide sequence data. Database: the journal of biological databases and curation 2009:bap013. doi: 10.1093\/database\/bap013 . http:\/\/www.pubmedcentral.nih.gov\/articlerender.fcgi?artid=2797453&tool=pmcentrez&rendertype=abstract","DOI":"10.1093\/database\/bap013"},{"key":"1753_CR54","doi-asserted-by":"crossref","unstructured":"Awan F, Mukherjee A (2002) Lossless compression handbook, chap. text compression, pp 227\u2013245. Communications, networking and multimedia. Elsevier Science, London","DOI":"10.1016\/B978-012620861-0\/50011-5"},{"key":"1753_CR55","doi-asserted-by":"crossref","first-page":"1013","DOI":"10.3923\/itj.2010.1013.1021","volume":"9","author":"A Carus","year":"2010","unstructured":"Carus A, Mesut A (2010) Fast text compression using multiple static dictionaries. Inf Technol J 9:1013\u20131021","journal-title":"Inf Technol J"},{"key":"1753_CR56","unstructured":"Crochemore M, Lecroq T (2012) The computer science and engineering handbook, chap. pattern matching and text compression algorithms, pp 3\u201377. CRC Press, Boca Raton"},{"key":"1753_CR57","unstructured":"Burrows M, Wheeler DA (1994) A block-sorting lossless data compression algorithm. Tech. rep. digital equipment corporation, California"},{"key":"1753_CR58","unstructured":"7-zip soruceforge editor\u2019s review (2016) https:\/\/sourceforge.net\/projects\/sevenzip\/editorial\/?source=psp [Online]. Accessed on 03 March 2016"},{"key":"1753_CR59","unstructured":"Mahooney M (2016) Data compression explained. http:\/\/mattmahoney.net\/dc\/dce.html#Section_523 [Online]. Accessed on 03 March 2016"},{"issue":"12","key":"1753_CR60","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1371\/journal.pone.0081414","volume":"8","author":"JJ Selva","year":"2013","unstructured":"Selva JJ, Chen X (2013) SRComp: short read sequence compression using burstsort and Elias omega coding. PLoS ONE 8(12):1\u20137. doi: 10.1371\/journal.pone.0081414","journal-title":"PLoS ONE"},{"issue":"17","key":"1753_CR61","doi-asserted-by":"publisher","first-page":"2192","DOI":"10.1093\/bioinformatics\/btq346","volume":"26","author":"W Tembe","year":"2010","unstructured":"Tembe W, Lowey J, Suh E, Genomics T, Street N (2010) G-SQZ: compact encoding of genomic sequence and quality data. Bioinformatics 26(17):2192\u20132194. doi: 10.1093\/bioinformatics\/btq346","journal-title":"Bioinformatics"},{"key":"1753_CR62","unstructured":"Mahoney MV (2005) Adaptive weighing of context models for lossless data compression. Florida Tech., Melbourne CS-2005-16(x):1\u20136. http:\/\/professor.unisinos.br\/linds\/teoinfo\/paq.pdf"},{"key":"1753_CR63","doi-asserted-by":"crossref","DOI":"10.1007\/978-1-84882-903-9","volume-title":"Handbook of data compression","author":"D Salomon","year":"2010","unstructured":"Salomon D, Bryant D, Motta G (2010) Handbook of data compression. Springer, London"},{"key":"1753_CR64","doi-asserted-by":"crossref","unstructured":"Batu T, Ergun F, Sahinalp C (2006) Oblivious string embeddings and edit distance approximations. In: Proceedings of the seventeenth annual ACM-SIAM symposium on discrete algorithm, pp 792\u2013801. Society for Industrial and Applied Mathematics","DOI":"10.1145\/1109557.1109644"},{"key":"1753_CR65","unstructured":"Biocancer Research Journal: Transcriptoma (2014) http:\/\/www.biocancer.com\/journal\/1353\/31-transcriptoma [Online]. Accessed on 03 Dec 2014"},{"key":"1753_CR66","doi-asserted-by":"crossref","unstructured":"Pevsner J (2009) Bioinformatics and functional genomics, 2nd edn. Springer, Berlin","DOI":"10.1002\/9780470451496"},{"issue":"21","key":"1753_CR67","doi-asserted-by":"publisher","first-page":"2979","DOI":"10.1093\/bioinformatics\/btr505","volume":"27","author":"S Deorowicz","year":"2011","unstructured":"Deorowicz S, Grabowski S (2011) Robust relative compression of genomes with random access. Bioinformatics 27(21):2979\u20132986. doi: 10.1093\/bioinformatics\/btr505","journal-title":"Bioinformatics"}],"container-title":["The Journal of Supercomputing"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/s11227-016-1753-4.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/article\/10.1007\/s11227-016-1753-4\/fulltext.html","content-type":"text\/html","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/s11227-016-1753-4.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2019,9,9]],"date-time":"2019-09-09T09:50:19Z","timestamp":1568022619000},"score":1,"resource":{"primary":{"URL":"http:\/\/link.springer.com\/10.1007\/s11227-016-1753-4"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2016,6,10]]},"references-count":67,"journal-issue":{"issue":"12","published-print":{"date-parts":[[2016,12]]}},"alternative-id":["1753"],"URL":"https:\/\/doi.org\/10.1007\/s11227-016-1753-4","relation":{},"ISSN":["0920-8542","1573-0484"],"issn-type":[{"type":"print","value":"0920-8542"},{"type":"electronic","value":"1573-0484"}],"subject":[],"published":{"date-parts":[[2016,6,10]]}}}