{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,2,4]],"date-time":"2026-02-04T17:36:08Z","timestamp":1770226568064,"version":"3.49.0"},"reference-count":9,"publisher":"Springer Science and Business Media LLC","issue":"5","license":[{"start":{"date-parts":[[2024,6,6]],"date-time":"2024-06-06T00:00:00Z","timestamp":1717632000000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.springernature.com\/gp\/researchers\/text-and-data-mining"},{"start":{"date-parts":[[2024,6,6]],"date-time":"2024-06-06T00:00:00Z","timestamp":1717632000000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/www.springernature.com\/gp\/researchers\/text-and-data-mining"}],"content-domain":{"domain":["link.springer.com"],"crossmark-restriction":false},"short-container-title":["Front. Comput. Sci."],"published-print":{"date-parts":[[2024,10]]},"DOI":"10.1007\/s11704-024-3806-9","type":"journal-article","created":{"date-parts":[[2024,6,6]],"date-time":"2024-06-06T10:02:11Z","timestamp":1717668131000},"update-policy":"https:\/\/doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":5,"title":["SS-Pro: a simplified Siamese contrastive learning approach for protein surface representation"],"prefix":"10.1007","volume":"18","author":[{"given":"Ao","family":"Shen","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Mingzhi","family":"Yuan","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Yingfan","family":"Ma","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Manning","family":"Wang","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"297","published-online":{"date-parts":[[2024,6,6]]},"reference":[{"key":"3806_CR1","doi-asserted-by":"publisher","first-page":"102548","DOI":"10.1016\/j.sbi.2023.102548","volume":"79","author":"C Isert","year":"2023","unstructured":"Isert C, Atz K, Schneider G. Structure-based drug design with geometric deep learning. Current Opinion in Structural Biology, 2023, 79: 102548","journal-title":"Current Opinion in Structural Biology"},{"issue":"2","key":"3806_CR2","doi-asserted-by":"publisher","first-page":"184","DOI":"10.1038\/s41592-019-0666-6","volume":"17","author":"P Gainza","year":"2020","unstructured":"Gainza P, Sverrisson F, Monti F, Rodol\u00e0 E, Boscaini D, Bronstein M M, Correia B E. Deciphering interaction fingerprints from protein molecular surfaces using geometric deep learning. Nature Methods, 2020, 17(2): 184\u2013192","journal-title":"Nature Methods"},{"key":"3806_CR3","doi-asserted-by":"crossref","unstructured":"Sverrisson F, Feydy J, Correia B E, Bronstein M M. Fast end-to-end learning on protein surfaces. In: Proceedings of 2021 IEEE\/CVF Conference on Computer Vision and Pattern Recognition. 2021, 15267\u201315276","DOI":"10.1109\/CVPR46437.2021.01502"},{"key":"3806_CR4","doi-asserted-by":"crossref","unstructured":"Chen X, He K. Exploring simple Siamese representation learning. In: Proceedings of 2021 IEEE\/CVF Conference on Computer Vision and Pattern Recognition. 2021, 15745\u201315753","DOI":"10.1109\/CVPR46437.2021.01549"},{"issue":"1","key":"3806_CR5","doi-asserted-by":"publisher","first-page":"235","DOI":"10.1093\/nar\/28.1.235","volume":"28","author":"H M Berman","year":"2000","unstructured":"Berman H M, Westbrook J, Feng Z, Gilliland G, Bhat T N, Weissig H, Shindyalov I N, Bourne P E. The protein data bank. Nucleic Acids Research, 2000, 28(1): 235\u2013242","journal-title":"Nucleic Acids Research"},{"issue":"12","key":"3806_CR6","doi-asserted-by":"publisher","first-page":"btad724","DOI":"10.1093\/bioinformatics\/btad724","volume":"39","author":"M Yuan","year":"2023","unstructured":"Yuan M, Shen A, Fu K, Guan J, Ma Y, Qiao Q, Wang M. ProteinMAE: masked autoencoder for protein surface self-supervised learning. Bioinformatics, 2023, 39(12): btad724","journal-title":"Bioinformatics"},{"key":"3806_CR7","unstructured":"Vaswani A, Shazeer N, Parmar N, Uszkoreit J, Jones L, Gomez A N, Kaiser L, Polosukhin I. Attention is all you need. In: Proceedings of the 31st International Conference on Neural Information Processing Systems. 2017, 6000\u20136010"},{"key":"3806_CR8","doi-asserted-by":"publisher","first-page":"533","DOI":"10.1016\/j.neunet.2018.09.001","volume":"108","author":"A V Phan","year":"2018","unstructured":"Phan A V, Le Nguyen M, Nguyen Y L H, Bui L T. DGCNN: A convolutional neural network over large-scale labeled graphs. Neural Networks, 2018, 108: 533\u2013543","journal-title":"Neural Networks"},{"key":"3806_CR9","unstructured":"Qi C R, Yi L, Su H, Guibas L J. PointNet++: Deep hierarchical feature learning on point sets in a metric space. In: Proceedings of the 31st International Conference on Neural Information Processing Systems. 2017, 5105\u20135114"}],"container-title":["Frontiers of Computer Science"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/link.springer.com\/content\/pdf\/10.1007\/s11704-024-3806-9.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/link.springer.com\/article\/10.1007\/s11704-024-3806-9\/fulltext.html","content-type":"text\/html","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/link.springer.com\/content\/pdf\/10.1007\/s11704-024-3806-9.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2025,11,19]],"date-time":"2025-11-19T20:24:15Z","timestamp":1763583855000},"score":1,"resource":{"primary":{"URL":"https:\/\/link.springer.com\/10.1007\/s11704-024-3806-9"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2024,6,6]]},"references-count":9,"journal-issue":{"issue":"5","published-print":{"date-parts":[[2024,10]]}},"alternative-id":["3806"],"URL":"https:\/\/doi.org\/10.1007\/s11704-024-3806-9","relation":{},"ISSN":["2095-2228","2095-2236"],"issn-type":[{"value":"2095-2228","type":"print"},{"value":"2095-2236","type":"electronic"}],"subject":[],"published":{"date-parts":[[2024,6,6]]},"assertion":[{"value":"10 October 2023","order":1,"name":"received","label":"Received","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"7 May 2024","order":2,"name":"accepted","label":"Accepted","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"6 June 2024","order":3,"name":"first_online","label":"First Online","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"Competing interests\n                      The authors declare that they have no competing interests or financial conflicts to disclose.","order":1,"name":"Ethics","group":{"name":"EthicsHeading","label":"Ethics"}}],"article-number":"185910"}}