{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,11,11]],"date-time":"2025-11-11T18:12:20Z","timestamp":1762884740534,"version":"3.45.0"},"reference-count":10,"publisher":"Springer Science and Business Media LLC","issue":"4","license":[{"start":{"date-parts":[[2025,11,11]],"date-time":"2025-11-11T00:00:00Z","timestamp":1762819200000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.springernature.com\/gp\/researchers\/text-and-data-mining"},{"start":{"date-parts":[[2025,11,11]],"date-time":"2025-11-11T00:00:00Z","timestamp":1762819200000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/www.springernature.com\/gp\/researchers\/text-and-data-mining"}],"content-domain":{"domain":["link.springer.com"],"crossmark-restriction":false},"short-container-title":["Front. Comput. Sci."],"published-print":{"date-parts":[[2026,4]]},"DOI":"10.1007\/s11704-025-50324-0","type":"journal-article","created":{"date-parts":[[2025,11,11]],"date-time":"2025-11-11T05:52:26Z","timestamp":1762840346000},"update-policy":"https:\/\/doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":0,"title":["GFAKaleidos: a tool for computing and comparing pangenome graph statistics"],"prefix":"10.1007","volume":"20","author":[{"given":"Yixin","family":"Xiang","sequence":"first","affiliation":[]},{"given":"Keyu","family":"Liu","sequence":"additional","affiliation":[]},{"given":"Leqi","family":"Wang","sequence":"additional","affiliation":[]},{"given":"Jianyu","family":"Zhou","sequence":"additional","affiliation":[]}],"member":"297","published-online":{"date-parts":[[2025,11,11]]},"reference":[{"issue":"6574","key":"50324_CR1","doi-asserted-by":"publisher","first-page":"abg8871","DOI":"10.1126\/science.abg8871","volume":"374","author":"J Sir\u00e9n","year":"2021","unstructured":"Sir\u00e9n J, Monlong J, Chang X, Novak A M, Eizenga J M, Markello C, Sibbesen J A, Hickey G, Chang P C, Carroll A, Gupta N, Gabriel S, Blackwell T W, Ratan A, Taylor K D, Rich S S, Rotter J I, Haussler D, Garrison E, Paten B. Pangenomics enables genotyping of known structural variants in 5202 diverse genomes. Science, 2021, 374(6574): abg8871","journal-title":"Science"},{"issue":"7914","key":"50324_CR2","doi-asserted-by":"publisher","first-page":"527","DOI":"10.1038\/s41586-022-04808-9","volume":"606","author":"Y Zhou","year":"2022","unstructured":"Zhou Y, Zhang Z, Bao Z, Li H, Lyu Y, Zan Y, Wu Y, Cheng L, Fang Y, Wu K, Zhang J, Lyu H, Lin T, Gao Q, Saha S, Mueller L, Fei Z, St\u00e4dler T, Xu S, Zhang Z, Speed D, Huang S. Graph pangenome captures missing heritability and empowers tomato breeding. Nature, 2022, 606(7914): 527\u2013534","journal-title":"Nature"},{"issue":"7960","key":"50324_CR3","doi-asserted-by":"publisher","first-page":"312","DOI":"10.1038\/s41586-023-05896-x","volume":"617","author":"W W Liao","year":"2023","unstructured":"Liao W W, Asri M, Ebler J, Doerr D, Haukness M, et al. A draft human pangenome reference. Nature, 2023, 617(7960): 312\u2013324","journal-title":"Nature"},{"issue":"8","key":"50324_CR4","doi-asserted-by":"publisher","first-page":"1750","DOI":"10.1038\/s41588-024-01823-6","volume":"56","author":"Y Zhang","year":"2024","unstructured":"Zhang Y, Zhao M, Tan J, Huang M, Chu X, Li Y, Han X, Fang T, Tian Y, Jarret R, Lu D, Chen Y, Xue L, Li X, Qin G, Li B, Sun Y, Deng X W, Deng Y, Zhang X, He H. Telomere-to-telomere Citrullus super-pangenome provides direction for watermelon breeding. Nature Genetics, 2024, 56(8): 1750\u20131761","journal-title":"Nature Genetics"},{"issue":"1","key":"50324_CR5","doi-asserted-by":"publisher","first-page":"81","DOI":"10.1007\/s11047-022-09882-6","volume":"21","author":"J A Baaijens","year":"2022","unstructured":"Baaijens J A, Bonizzoni P, Boucher C, Della Vedova G, Pirola Y, Rizzi R, Sir\u00e9n J. Computational graph pangenomics: a tutorial on data structures and their applications. Natural Computing, 2022, 21(1): 81\u2013108","journal-title":"Natural Computing"},{"issue":"13","key":"50324_CR6","doi-asserted-by":"publisher","first-page":"3319","DOI":"10.1093\/bioinformatics\/btac308","volume":"38","author":"A Guarracino","year":"2022","unstructured":"Guarracino A, Heumos S, Nahnsen S, Prins P, Garrison E. ODGI: understanding pangenome graphs. Bioinformatics, 2022, 38(13): 3319\u20133326","journal-title":"Bioinformatics"},{"issue":"7","key":"50324_CR7","doi-asserted-by":"publisher","first-page":"btae456","DOI":"10.1093\/bioinformatics\/btae456","volume":"40","author":"H Li","year":"2024","unstructured":"Li H, Marin M, Farhat M R. Exploring gene content with pangene graphs. Bioinformatics, 2024, 40(7): btae456","journal-title":"Bioinformatics"},{"issue":"1","key":"50324_CR8","doi-asserted-by":"publisher","first-page":"265","DOI":"10.1186\/s13059-020-02168-z","volume":"21","author":"H Li","year":"2020","unstructured":"Li H, Feng X, Chu C. The design and construction of reference pangenome graphs with minigraph. Genome Biology, 2020, 21(1): 265","journal-title":"Genome Biology"},{"issue":"4","key":"50324_CR9","doi-asserted-by":"publisher","first-page":"663","DOI":"10.1038\/s41587-023-01793-w","volume":"42","author":"G Hickey","year":"2024","unstructured":"Hickey G, Monlong J, Ebler J, Novak A M, Eizenga J M, Gao Y, Marschall T, Li H, Paten B. Pangenome graph construction from genome alignments with Minigraph-Cactus. Nature Biotechnology, 2024, 42(4): 663\u2013673","journal-title":"Nature Biotechnology"},{"issue":"11","key":"50324_CR10","doi-asserted-by":"publisher","first-page":"2008","DOI":"10.1038\/s41592-024-02430-3","volume":"21","author":"E Garrison","year":"2024","unstructured":"Garrison E, Guarracino A, Heumos S, Villani F, Bao Z, Tattini L, Hagmann J, Vorbrugg S, Marco-Sola S, Kubica C, Ashbrook D G, Thorell K, Rusholme-Pilcher R L, Liti G, Rudbeck E, Golicz A A, Nahnsen S, Yang Z, Mwaniki M N, Nobrega F L, Wu Y, Chen H, de Ligt J, Sudmant P H, Huang S, Weigel D, Soranzo N, Colonna V, Williams R W, Prins P. Building pangenome graphs. Nature Methods, 2024, 21(11): 2008\u20132012","journal-title":"Nature Methods"}],"container-title":["Frontiers of Computer Science"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/link.springer.com\/content\/pdf\/10.1007\/s11704-025-50324-0.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/link.springer.com\/article\/10.1007\/s11704-025-50324-0\/fulltext.html","content-type":"text\/html","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/link.springer.com\/content\/pdf\/10.1007\/s11704-025-50324-0.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2025,11,11]],"date-time":"2025-11-11T18:08:23Z","timestamp":1762884503000},"score":1,"resource":{"primary":{"URL":"https:\/\/link.springer.com\/10.1007\/s11704-025-50324-0"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2025,11,11]]},"references-count":10,"journal-issue":{"issue":"4","published-print":{"date-parts":[[2026,4]]}},"alternative-id":["50324"],"URL":"https:\/\/doi.org\/10.1007\/s11704-025-50324-0","relation":{},"ISSN":["2095-2228","2095-2236"],"issn-type":[{"type":"print","value":"2095-2228"},{"type":"electronic","value":"2095-2236"}],"subject":[],"published":{"date-parts":[[2025,11,11]]},"assertion":[{"value":"23 March 2025","order":1,"name":"received","label":"Received","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"16 June 2025","order":2,"name":"accepted","label":"Accepted","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"11 November 2025","order":3,"name":"first_online","label":"First Online","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"The authors declare that they have no competing interests or financial conflicts to disclose.","order":1,"name":"Ethics","group":{"name":"EthicsHeading","label":"Competing Interest"}}],"article-number":"2004903"}}