{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,10,23]],"date-time":"2025-10-23T20:48:36Z","timestamp":1761252516456},"reference-count":21,"publisher":"Springer Science and Business Media LLC","issue":"3","license":[{"start":{"date-parts":[[2007,9,19]],"date-time":"2007-09-19T00:00:00Z","timestamp":1190160000000},"content-version":"tdm","delay-in-days":0,"URL":"http:\/\/www.springer.com\/tdm"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["Neuroinform"],"published-print":{"date-parts":[[2007,9,28]]},"DOI":"10.1007\/s12021-007-0013-4","type":"journal-article","created":{"date-parts":[[2007,9,18]],"date-time":"2007-09-18T19:13:43Z","timestamp":1190142823000},"page":"189-203","source":"Crossref","is-referenced-by-count":16,"title":["Automated Axon Tracking of 3D Confocal Laser Scanning Microscopy Images Using Guided Probabilistic Region Merging"],"prefix":"10.1007","volume":"5","author":[{"given":"Ranga","family":"Srinivasan","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Xiaobo","family":"Zhou","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Eric","family":"Miller","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Ju","family":"Lu","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Jeff","family":"Litchman","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Stephen T. C.","family":"Wong","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"297","published-online":{"date-parts":[[2007,9,19]]},"reference":[{"issue":"7","key":"13_CR1","first-page":"36","volume":"11","author":"M. D. Abramoff","year":"2004","unstructured":"Abramoff, M. D., Magelhaes, P. J., & Ram, S. J. (2004). Image processing with Image. Journal of Biophotonics International, 11(7), 36\u201342.","journal-title":"Journal of Biophotonics International"},{"issue":"2","key":"13_CR2","doi-asserted-by":"crossref","first-page":"171","DOI":"10.1109\/TITB.2002.1006304","volume":"6","author":"K. A. Al-Kofahi","year":"2002","unstructured":"Al-Kofahi, K. A., Lasek, S., Szarowski, D. H., Pace, C. J., Nagy, G., Turner, J. N., et al. (2002). Rapid automated three-dimensional tracing of neurons from confocal image stacks. IEEE Transactions on Information Technology in Biomedicine, 6(2), 171\u2013187.","journal-title":"IEEE Transactions on Information Technology in Biomedicine"},{"issue":"4","key":"13_CR3","doi-asserted-by":"crossref","first-page":"331","DOI":"10.1016\/S1361-8415(97)85005-0","volume":"1","author":"W. A. Barrett","year":"1997","unstructured":"Barrett, W. A., & Mortensen, E. N. (1997). Interactive live-wire boundary extraction. Medical Image Analysis, 1(4), 331\u2013341.","journal-title":"Medical Image Analysis"},{"issue":"4","key":"13_CR4","doi-asserted-by":"crossref","first-page":"1608","DOI":"10.1016\/j.neuroimage.2006.05.036","volume":"32","author":"H. Cai","year":"2006","unstructured":"Cai, H., Xu, X., Lu, J., Lichtman, J. W., Yung, S. P., & Wong, S. T. (2006). Repulsive force based snake model to segment and track neuronal axons in 3D microscopy image stacks. NeuroImage, 32(4), 1608\u20131620.","journal-title":"NeuroImage"},{"issue":"2","key":"13_CR5","doi-asserted-by":"crossref","first-page":"125","DOI":"10.1109\/4233.767088","volume":"3","author":"A. Can","year":"1999","unstructured":"Can, A., Shen, H., Turner, J. N., Tanenbaum, H. L., & Roysam, B. (1999). Rapid automated tracing and feature extraction from retinal fundus images using direct exploratory algorithm. IEEE Transactions on Information Technology in Biomedicine, 3(2), 125\u2013138.","journal-title":"IEEE Transactions on Information Technology in Biomedicine"},{"issue":"3","key":"13_CR6","doi-asserted-by":"crossref","first-page":"353","DOI":"10.1109\/83.661185","volume":"7","author":"R. A. Carmona","year":"1998","unstructured":"Carmona, R. A., & Zhong, S. (1998). Adaptive smoothing respecting feature directions. IEEE Transactions on Image Processing, 7(3), 353\u2013358.","journal-title":"IEEE Transactions on Image Processing"},{"issue":"6","key":"13_CR7","doi-asserted-by":"crossref","first-page":"697","DOI":"10.1109\/TMI.2005.846851","volume":"24","author":"O. Debeir","year":"2005","unstructured":"Debeir, O., Van Ham, P., Kiss, R., & Decaestecker, C. (2005). Tracking of migrating cells under phase-contrast video microscopy with combined mean-shift processes. IEEE Transactions on Medical Imaging, 24(6), 697\u2013711.","journal-title":"IEEE Transactions on Medical Imaging"},{"key":"13_CR8","doi-asserted-by":"crossref","first-page":"32","DOI":"10.1080\/01969727308546046","volume":"3","author":"J. C. Dunn","year":"1973","unstructured":"Dunn, J. C. (1973). A fuzzy relative of the ISODATA process and its use in detecting compact well-separated clusters. Journal of Cybernetics, 3, 32\u201357.","journal-title":"Journal of Cybernetics"},{"issue":"1","key":"13_CR9","doi-asserted-by":"crossref","first-page":"52","DOI":"10.1111\/j.1365-2818.2005.01466.x","volume":"218","author":"J. C. Fiala","year":"2005","unstructured":"Fiala, J. C. (2005). Reconstruct: A free editor for serial section microscopy. Journal of Microscopy, 218(1), 52\u201361.","journal-title":"Journal of Microscopy"},{"key":"13_CR10","unstructured":"Gonzalez, R., & Woods, R. (1992). Digital image processing (2nd edn.). Addison Wesley, pp. 617\u2013626."},{"issue":"4","key":"13_CR11","doi-asserted-by":"crossref","first-page":"321","DOI":"10.1007\/BF00133570","volume":"1","author":"M. Kass","year":"1987","unstructured":"Kass, M., Witkin, A., & Terzopoulos, D. (1987). Snakes: Active contour models. International Journal of Computer Vision, 1(4), 321\u2013331.","journal-title":"International Journal of Computer Vision"},{"issue":"6947","key":"13_CR12","doi-asserted-by":"crossref","first-page":"426","DOI":"10.1038\/nature01836","volume":"424","author":"N. Kasthuri","year":"2003","unstructured":"Kasthuri, N., & Lichtman, J. W. (2003). The role of neuronal identity in synaptic competition. Letters to Nature, 424(6947), 426\u2013430.","journal-title":"Letters to Nature"},{"issue":"3","key":"13_CR13","doi-asserted-by":"crossref","first-page":"381","DOI":"10.1016\/S0896-6273(01)00383-X","volume":"31","author":"C. R. Keller-Peck","year":"2001","unstructured":"Keller-Peck, C. R., Walsh, M. K., Gan, W. B., Feng, G., Sanes, J. R., & Lichtman, J. W. (2001). Asynchronous synapse elimination in neonatal motor units: Studies using GFP transgenic mice. Neuron, 31(3), 381\u2013394.","journal-title":"Neuron"},{"issue":"2","key":"13_CR14","doi-asserted-by":"crossref","first-page":"121","DOI":"10.1111\/j.1365-2818.2007.01762.x","volume":"226","author":"F. Li","year":"2007","unstructured":"Li, F., Zhou, X., & Wong, S. T. C. (2007). An automated feedback system with the hybrid model of scoring and classification for solving over-segmentation problems in RNAi high content screening. Journal of Microscopy, 226(2), 121\u2013132.","journal-title":"Journal of Microscopy"},{"issue":"2","key":"13_CR15","doi-asserted-by":"crossref","first-page":"167","DOI":"10.1002\/cyto.a.20022","volume":"58A","author":"E. Meijering","year":"2004","unstructured":"Meijering, E., Jacob, M., Sarria, J.-C. F., Steiner, P., Hirling, H., & Unser, M. (2004). Design and validation of a tool for neurite tracing and analysis in fluorescence microscopy images. Cytometry Part A, 58A(2), 167\u2013176.","journal-title":"Cytometry Part A"},{"key":"13_CR16","doi-asserted-by":"crossref","first-page":"62","DOI":"10.1109\/TSMC.1979.4310076","volume":"9","author":"N. Otsu","year":"1979","unstructured":"Otsu, N. (1979). A threshold selection method from gray-level histograms. IEEE Transactions on Systems, Man, and Cybernetics, 9, 62\u201366.","journal-title":"IEEE Transactions on Systems, Man, and Cybernetics"},{"key":"13_CR17","doi-asserted-by":"crossref","first-page":"381","DOI":"10.1088\/0954-898X_13_3_308","volume":"13","author":"G. J. Streekstra","year":"2002","unstructured":"Streekstra, G. J., & van Pelt, J. (2002). Analysis of tubular structures in three-dimensional confocal images. Network: Computer Neural System, 13, 381\u2013395.","journal-title":"Network: Computer Neural System"},{"issue":"12","key":"13_CR18","doi-asserted-by":"crossref","first-page":"1529","DOI":"10.1109\/TMI.2005.857654","volume":"24","author":"J. Tschirren","year":"2005","unstructured":"Tschirren, J., Hoffman, E. A., McLennan, G., & Sonka, M. (2005) Intrathoracic airway trees: Segmentation and airway morphology analysis from low-dose CT scans. IEEE Transactions on Medical Imaging, 24(12), 1529\u20131539.","journal-title":"IEEE Transactions on Medical Imaging"},{"key":"13_CR19","first-page":"8","volume":"30","author":"M. Wang","year":"2007","unstructured":"Wang, M., Zhou, X., King, R. W., & Wong, S. T. C. (2007). Context based mixture model for cell phase identification in automated fluorescence microscopy. BMC Bioinformatics, 30, 8\u201332.","journal-title":"BMC Bioinformatics"},{"issue":"11","key":"13_CR20","doi-asserted-by":"crossref","first-page":"2415","DOI":"10.1109\/TCSI.2006.884461","volume":"53","author":"G. Xiong","year":"2006","unstructured":"Xiong, G., Zhou, X., & Ji, L. (2006). Automated segmentation of drosophila RNAi fluorescence cellular images using deformable models. IEEE Transactions on Circuits and Systems I, 53(11), 2415\u20132424.","journal-title":"IEEE Transactions on Circuits and Systems I"},{"issue":"1","key":"13_CR21","doi-asserted-by":"crossref","first-page":"149","DOI":"10.1016\/j.jneumeth.2006.07.028","volume":"160","author":"Y. Zhang","year":"2006","unstructured":"Zhang, Y., Zhou, X., Degterev, A., Lipinski, M., Adjeroh, D., Yuan J., et al. (2006). A novel tracing algorithm for high throughput imaging screening of neuron-based assays. Journal of Neuroscience Methods, 160(1), 149\u2013162.","journal-title":"Journal of Neuroscience Methods"}],"container-title":["Neuroinformatics"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/s12021-007-0013-4.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/article\/10.1007\/s12021-007-0013-4\/fulltext.html","content-type":"text\/html","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/s12021-007-0013-4","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2019,6,2]],"date-time":"2019-06-02T01:57:19Z","timestamp":1559440639000},"score":1,"resource":{"primary":{"URL":"http:\/\/link.springer.com\/10.1007\/s12021-007-0013-4"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2007,9,19]]},"references-count":21,"journal-issue":{"issue":"3","published-print":{"date-parts":[[2007,9,28]]}},"alternative-id":["13"],"URL":"https:\/\/doi.org\/10.1007\/s12021-007-0013-4","relation":{},"ISSN":["1539-2791","1559-0089"],"issn-type":[{"value":"1539-2791","type":"print"},{"value":"1559-0089","type":"electronic"}],"subject":[],"published":{"date-parts":[[2007,9,19]]}}}