{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,10,20]],"date-time":"2025-10-20T17:55:02Z","timestamp":1760982902990},"reference-count":44,"publisher":"Springer Science and Business Media LLC","issue":"1","license":[{"start":{"date-parts":[[2009,1,15]],"date-time":"2009-01-15T00:00:00Z","timestamp":1231977600000},"content-version":"tdm","delay-in-days":0,"URL":"http:\/\/www.springer.com\/tdm"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["Neuroinform"],"published-print":{"date-parts":[[2009,3]]},"DOI":"10.1007\/s12021-008-9039-5","type":"journal-article","created":{"date-parts":[[2009,1,14]],"date-time":"2009-01-14T14:58:50Z","timestamp":1231945130000},"page":"7-22","source":"Crossref","is-referenced-by-count":37,"title":["Matching Spatial with Ontological Brain Regions using Java Tools for Visualization, Database Access, and Integrated Data Analysis"],"prefix":"10.1007","volume":"7","author":[{"given":"Gleb","family":"Bezgin","sequence":"first","affiliation":[]},{"given":"Andrew T.","family":"Reid","sequence":"additional","affiliation":[]},{"given":"Dirk","family":"Schubert","sequence":"additional","affiliation":[]},{"given":"Rolf","family":"K\u00f6tter","sequence":"additional","affiliation":[]}],"member":"297","published-online":{"date-parts":[[2009,1,15]]},"reference":[{"key":"9039_CR1","doi-asserted-by":"crossref","first-page":"1061","DOI":"10.1016\/j.neuroimage.2007.02.037","volume":"37","author":"K. Amunts","year":"2007","unstructured":"Amunts, K., Schleicher, A., & Zilles, K. (2007). Cytoarchitecture of the cerebral cortex\u2014more than localization. NeuroImage, 37, 1061\u20131065. doi: 10.1016\/j.neuroimage.2007.02.037 .","journal-title":"NeuroImage"},{"key":"9039_CR2","doi-asserted-by":"crossref","first-page":"65","DOI":"10.1002\/cne.902960106","volume":"296","author":"R. A. Andersen","year":"2004","unstructured":"Andersen, R. A., Asanuma, C., Essick, G., & Siegel, R. M. (2004). Corticocortical connections of anatomically and physiologically defined subdivisions within the inferior parietal lobule.. The Journal of Comparative Neurology, 296, 65\u2013113. doi: 10.1002\/cne.902960106 .","journal-title":"The Journal of Comparative Neurology"},{"key":"9039_CR3","doi-asserted-by":"crossref","unstructured":"Bezgin, G., Wanke, E., Krumnack, A., & K\u00f6tter, R. (2008). Deducing logical relationships between spatially registered cortical parcellations under conditions of uncertainty. Neural Networks. doi: 10.1016\/j.neunet.2008.05.010","DOI":"10.1016\/j.neunet.2008.05.010"},{"key":"9039_CR4","first-page":"91","volume-title":"Imaging. Methods in enzymology 385","author":"K. J. Black","year":"2004","unstructured":"Black, K. J., Koller, J. M., Snyder, A. Z., & Perlmutter, J. S. (2004). Atlas template images for nonhuman primate neuroimaging: Baboon and macaque. In P. M. Conn (Ed.), Imaging. Methods in enzymology 385 (pp. 91\u2013102). New York: Elsevier."},{"key":"9039_CR5","doi-asserted-by":"crossref","first-page":"63","DOI":"10.1006\/nimg.1995.1009","volume":"2","author":"D. M. Bowden","year":"1995","unstructured":"Bowden, D. M., & Martin, R. F. (1995). NeuroNames brain hierarchy. NeuroImage, 2, 63\u201383. doi: 10.1006\/nimg.1995.1009 .","journal-title":"NeuroImage"},{"key":"9039_CR6","first-page":"177","volume":"4","author":"K. Brodmann","year":"1905","unstructured":"Brodmann, K. (1905). Beitr\u00e4ge zur histologischen Lokalisation der Gro\u03b2hirnrinde. III. Mitteilung. Die Rindenfelder der niederen Affen. Journal of Psychology and Neurology, 4, 177\u2013226.","journal-title":"Journal of Psychology and Neurology"},{"key":"9039_CR7","first-page":"177","volume":"4","author":"K. Brodmann","year":"1909","unstructured":"Brodmann, K. (1909). Beitrage zur histologischen Localisation der Grosshirnrinde. Dritte Mitteilung. Die Rindenfelder der niederen Affen. Journal f\u00fcr Psychologie und Neurologie, 4, 177\u2013226.","journal-title":"Journal f\u00fcr Psychologie und Neurologie"},{"key":"9039_CR8","doi-asserted-by":"crossref","first-page":"6283","DOI":"10.1523\/JNEUROSCI.21-16-06283.2001","volume":"21","author":"D. M. Clower","year":"2001","unstructured":"Clower, D. M., West, R. A., Lynch, J. C., & Strick, P. L. (2001). The inferior parietal lobule is the target of output from the superior colliculus, hippocampus, and cerebellum. The Journal of Neuroscience, 21, 6283\u20136291.","journal-title":"The Journal of Neuroscience"},{"key":"9039_CR9","first-page":"1","volume":"1","author":"S. Crook","year":"2005","unstructured":"Crook, S., Beeman, D., Gleeson, P., & Howell, F. (2005). XML for model specification in neuroscience. Brain Minds Media, 1, 1\u201324.","journal-title":"Brain Minds Media"},{"key":"9039_CR10","doi-asserted-by":"crossref","first-page":"269","DOI":"10.1007\/BF01386390","volume":"1","author":"E. W. Dijkstra","year":"1959","unstructured":"Dijkstra, E. W. (1959). A note on two problems in connexion with graphs. Numerische Mathematik, 1, 269\u2013271. doi: 10.1007\/BF01386390 .","journal-title":"Numerische Mathematik"},{"key":"9039_CR11","doi-asserted-by":"crossref","first-page":"510","DOI":"10.1002\/1096-9861(20001002)425:4<510::AID-CNE4>3.0.CO;2-R","volume":"425","author":"S.-L. Ding","year":"2000","unstructured":"Ding, S.-L., van Hoesen, G., & Rockland, K. (2000). Inferior parietal lobule projections to the presubiculum and neighboring ventromedial temporal cortical areas. The Journal of Comparative Neurology, 425, 510\u2013530. doi: 10.1002\/1096-9861(20001002)425:4<510::AID-CNE4>3.0.CO;2-R .","journal-title":"The Journal of Comparative Neurology"},{"key":"9039_CR12","doi-asserted-by":"crossref","first-page":"967","DOI":"10.1002\/jmri.1139","volume":"13","author":"D. T. Gering","year":"2001","unstructured":"Gering, D. T., Nabavi, A., Kikinis, R., Hata, N., O\u2019Donnell, L. J., Grimson, W. E. L., et al. (2001). An integrated visualization system for surgical planning and guidance using image fusion and an open MR. Journal of Magnetic Resonance Imaging, 13, 967\u2013975. doi: 10.1002\/jmri.1139 .","journal-title":"Journal of Magnetic Resonance Imaging"},{"key":"9039_CR13","doi-asserted-by":"crossref","first-page":"1209","DOI":"10.1098\/rstb.2001.0910","volume":"356","author":"N. H. Goddard","year":"2001","unstructured":"Goddard, N. H., Hucka, M., Howell, F., Cornelis, H., Shankar, K., & Beeman, D. (2001). Towards NeuroML: model description methods for collaborative modeling in neuroscience. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences, 356, 1209\u20131228. doi: 10.1098\/rstb.2001.0910 .","journal-title":"Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences"},{"key":"9039_CR14","unstructured":"Golbreich, C., Bierlaire, O., Dameron, O., & Gibaud, B. (2005). Use case: Ontology with rules for identifying brain anatomical structures. In: W3C Workshop on Rule Languages for Interoperability."},{"key":"9039_CR15","doi-asserted-by":"crossref","first-page":"1","DOI":"10.3389\/neuro.11.004.2007","volume":"1","author":"T. Hjornevik","year":"2007","unstructured":"Hjornevik, T., Leergaard, T. B., Darine, D., Moldestad, O., Dale, A. M., Willoch, F., et al. (2007). Three-dimensional atlas system for mouse and rat brain imaging data. Frontiers in Neuroinformatics, 1, 1\u201311. doi: 10.3389\/neuro.11.004.2007 .","journal-title":"Frontiers in Neuroinformatics"},{"key":"9039_CR16","unstructured":"Howell, F., McDonnell, N., Zaborszky, L., & Varsanyi, P. (2005). Tools for integrating 3D single cell and population neuroanatomy data. In: UK e-science All Hands Meeting 2005 Nottingham UK."},{"key":"9039_CR17","doi-asserted-by":"crossref","first-page":"127","DOI":"10.1385\/NI:2:2:127","volume":"2","author":"R. K\u00f6tter","year":"2004","unstructured":"K\u00f6tter, R. (2004). Online retrieval, processing, and visualization of primate connectivity data from the CoCoMac database. Neuroinformatics, 2, 127\u2013144. doi: 10.1385\/NI:2:2:127 .","journal-title":"Neuroinformatics"},{"key":"9039_CR18","doi-asserted-by":"crossref","first-page":"149","DOI":"10.1007\/978-3-540-71512-2_5","volume-title":"Handbook of brain connectivity, series: Understanding complex systems","author":"R. K\u00f6tter","year":"2007","unstructured":"K\u00f6tter, R. (2007). Anatomical concepts of brain connectivity. In V. Jirsa, & A. R. McIntosh (Eds.), Handbook of brain connectivity, series: Understanding complex systems (pp. 149\u2013166). Berlin: Springer."},{"key":"9039_CR19","doi-asserted-by":"crossref","first-page":"751","DOI":"10.1098\/rstb.2005.1625","volume":"360","author":"R. K\u00f6tter","year":"2005","unstructured":"K\u00f6tter, R., & Wanke, E. (2005). Mapping brains without coordinates. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences, 360, 751\u2013766. doi: 10.1098\/rstb.2005.1625 .","journal-title":"Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences"},{"key":"9039_CR20","doi-asserted-by":"crossref","first-page":"112","DOI":"10.1002\/1096-9861(20001204)428:1<112::AID-CNE8>3.0.CO;2-9","volume":"428","author":"J. W. Lewis","year":"2000","unstructured":"Lewis, J. W., & Van Essen, D. C. (2000a). Corticocortical connections of visual, sensorimotor, and multimodal processing areas in the parietal lobe of the macaque monkey. The Journal of Comparative Neurology, 428, 112\u2013137. doi: 10.1002\/1096-9861(20001204)428:1<112::AID-CNE8>3.0.CO;2-9 .","journal-title":"The Journal of Comparative Neurology"},{"key":"9039_CR21","doi-asserted-by":"crossref","first-page":"79","DOI":"10.1002\/1096-9861(20001204)428:1<79::AID-CNE7>3.0.CO;2-Q","volume":"428","author":"J. W. Lewis","year":"2000","unstructured":"Lewis, J. W., & Van Essen, D. C. (2000b). Mapping of architectonic subdivisions in the macaque monkey, with emphasis on parieto-occipital cortex. The Journal of Comparative Neurology, 428, 79\u2013111. doi: 10.1002\/1096-9861(20001204)428:1<79::AID-CNE7>3.0.CO;2-Q .","journal-title":"The Journal of Comparative Neurology"},{"key":"9039_CR22","doi-asserted-by":"crossref","first-page":"119","DOI":"10.1006\/nimg.1996.0036","volume":"4","author":"R. F. Martin","year":"1996","unstructured":"Martin, R. F., & Bowden, D. M. (1996). A stereotaxic template atlas of the macaque brain for digital imaging and quantitative neuroanatomy. NeuroImage, 4, 119\u2013150. doi: 10.1006\/nimg.1996.0036 .","journal-title":"NeuroImage"},{"key":"9039_CR23","unstructured":"Mechouche, A., Golbreich, C., & Gibaud, B. (2006). Semantic description of brain MRI images. In: First International Workshop on Semantic Web Annotations for Multimedia."},{"key":"9039_CR24","doi-asserted-by":"crossref","first-page":"1007","DOI":"10.1111\/j.1460-9568.2005.03921.x","volume":"21","author":"A. Morel","year":"2005","unstructured":"Morel, A., Liu, J., Wannier, T., Jeanmonod, D., & Rouiller, E. M. (2005). Divergence and convergence of thalamocortical projections to premotor and supplementary motor cortex: a multiple tracing study in the macaque monkey. The European Journal of Neuroscience, 21, 1007\u20131029. doi: 10.1111\/j.1460-9568.2005.03921.x .","journal-title":"The European Journal of Neuroscience"},{"key":"9039_CR25","volume-title":"The cerebellum and red nucleus. Anatomy and physiology","author":"A. T. Mussen","year":"1967","unstructured":"Mussen, A. T. (1967). A cyto-architectural atlas of the brain stem of Macacus rhesus. In A. T. Mussen (Ed.), The cerebellum and red nucleus. Anatomy and physiology. New York: Hafner."},{"key":"9039_CR26","volume-title":"The rat brain in stereotaxic coordinates","author":"G. Paxinos","year":"1998","unstructured":"Paxinos, G., & Watson, C. (1998). The rat brain in stereotaxic coordinates (4th ed.). San Diego: Academic.","edition":"4"},{"key":"9039_CR27","volume-title":"The rhesus monkey brain in stereotaxic coordinates","author":"G. Paxinos","year":"2000","unstructured":"Paxinos, G., Huang, X.-F., & Toga, A. W. (2000). The rhesus monkey brain in stereotaxic coordinates. New York: Academic."},{"key":"9039_CR28","doi-asserted-by":"crossref","first-page":"283","DOI":"10.1016\/S0013-4694(98)00022-4","volume":"106","author":"G. Rizzolatti","year":"1998","unstructured":"Rizzolatti, G., Luppino, G., & Matelli, M. (1998). The organization of the cortical motor system: new concepts. Electroencephalography and Clinical Neurophysiology, 106, 283\u2013296. doi: 10.1016\/S0013-4694(98)00022-4 .","journal-title":"Electroencephalography and Clinical Neurophysiology"},{"key":"9039_CR29","volume-title":"A combined MRI and histology atlas of the rhesus monkey brain","author":"K. S. Saleem","year":"2006","unstructured":"Saleem, K. S., & Logothetis, N. K. (2006). A combined MRI and histology atlas of the rhesus monkey brain. London: Elsevier."},{"key":"9039_CR30","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1016\/0006-8993(78)90584-X","volume":"149","author":"B. Seltzer","year":"1978","unstructured":"Seltzer, B., & Pandya, D. N. (1978). Afferent cortical connections and architectonics of the superior temporal sulcus and surrounding cortex in the rhesus monkey. Brain Research, 149, 1\u201324. doi: 10.1016\/0006-8993(78)90584-X .","journal-title":"Brain Research"},{"key":"9039_CR31","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1002\/cne.901450102","volume":"145","author":"O. A. Smith","year":"1972","unstructured":"Smith, O. A., Kastella, K. G., & Randall, D. C. (1972). A stereotaxic atlas of the brain stem of Macaca mulatta in the sitting position. The Journal of Comparative Neurology, 145, 1\u201323. doi: 10.1002\/cne.901450102 .","journal-title":"The Journal of Comparative Neurology"},{"key":"9039_CR32","first-page":"245","volume":"4","author":"O. Sporns","year":"2005","unstructured":"Sporns, O., Tononi, G., & K\u00f6tter, R. (2005). The human connectome: a structural description of the human brain. PLoS Computational Biology, 4, 245\u2013251.","journal-title":"PLoS Computational Biology"},{"key":"9039_CR33","doi-asserted-by":"crossref","first-page":"1159","DOI":"10.1098\/rstb.2001.0908","volume":"356","author":"K. E. Stephan","year":"2001","unstructured":"Stephan, K. E., Kamper, L., Bozkurt, A., Burns, G. A. P. C., Young, M. P., & K\u00f6tter, R. (2001). Advanced database methodology for the collation of connectivity data on macaque brain (CoCoMac). Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences, 356, 1159\u20131186. doi: 10.1098\/rstb.2001.0908 .","journal-title":"Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences"},{"key":"9039_CR34","doi-asserted-by":"crossref","first-page":"265","DOI":"10.1002\/cne.902220208","volume":"222","author":"J. Szabo","year":"1984","unstructured":"Szabo, J., & Cowan, W. M. (1984). A stereotaxic atlas of the brain of the Cynomolgus monkey (Macaca fascicularis). The Journal of Comparative Neurology, 222, 265\u2013300. doi: 10.1002\/cne.902220208 .","journal-title":"The Journal of Comparative Neurology"},{"key":"9039_CR35","doi-asserted-by":"crossref","first-page":"3328","DOI":"10.1111\/j.0953-816X.2004.03425.x","volume":"19","author":"M. Takada","year":"2004","unstructured":"Takada, M., Nambu, A., Hatanaka, N., Tachibana, Y., Miyachi, S., Taira, M., et al. (2004). Organization of prefrontal outflow toward frontal motor-related areas in macaque monkeys. The European Journal of Neuroscience, 19, 3328\u20133342. doi: 10.1111\/j.0953-816X.2004.03425.x .","journal-title":"The European Journal of Neuroscience"},{"key":"9039_CR36","volume-title":"Co-planar stereotaxic atlas of the human brain: 3-dimensional proportional system\u2014an approach to cerebral imaging","author":"J. Talairach","year":"1988","unstructured":"Talairach, J., & Tournoux, P. (1988). Co-planar stereotaxic atlas of the human brain: 3-dimensional proportional system\u2014an approach to cerebral imaging. New York: Thieme."},{"key":"9039_CR37","doi-asserted-by":"crossref","first-page":"37","DOI":"10.1002\/ar.1057","volume":"265","author":"A. W. Toga","year":"2001","unstructured":"Toga, A. W., & Thompson, P. M. (2001). Maps of the brain. The Anatomical Record, 265, 37\u201353, The New Anatomist. doi: 10.1002\/ar.1057 .","journal-title":"The Anatomical Record"},{"key":"9039_CR38","doi-asserted-by":"crossref","first-page":"869","DOI":"10.1098\/rstb.2005.1651","volume":"360","author":"D. S. Tuch","year":"2005","unstructured":"Tuch, D. S., Wisco, J. J., Khachaturian, M. H., Ekstrom, L. B., K\u00f6tter, R., & Vanduffel, W. (2005). Q-ball imaging of macaque white matter architecture. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences, 360, 869\u2013879. doi: 10.1098\/rstb.2005.1651 .","journal-title":"Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences"},{"key":"9039_CR39","doi-asserted-by":"crossref","first-page":"273","DOI":"10.1006\/nimg.2001.0978","volume":"15","author":"N. Tzourio-Mazoyer","year":"2002","unstructured":"Tzourio-Mazoyer, N., Landeau, B., Papathanassiou, D., Crivello, F., Etard, O., Delcroix, N., et al. (2002). Automated anatomical labeling of activations in SPM using a macroscopic anatomical parcellation of the MNI MRI single-subject brain. NeuroImage, 15, 273\u2013289. doi: 10.1006\/nimg.2001.0978 .","journal-title":"NeuroImage"},{"key":"9039_CR40","doi-asserted-by":"crossref","first-page":"209","DOI":"10.1016\/j.neuron.2007.10.015","volume":"56","author":"D. C. Essen Van","year":"2007","unstructured":"Van Essen, D. C., & Dierker, D. L. (2007). Surface-based and probabilistic atlases of primate cerebral cortex. Neuron, 56, 209\u2013225. doi: 10.1016\/j.neuron.2007.10.015 .","journal-title":"Neuron"},{"key":"9039_CR41","volume-title":"Databasing the brain: from data to knowledge (Neuroinformatics), ch. 22","author":"D. C. Essen Van","year":"2005","unstructured":"Van Essen, D. C., Harwell, J., Hanlon, D., & Dickson, J. (2005). Surface-based atlases and a database of cortical structure and function. In S. H. Koslow, & S. Subramaniam (Eds.), Databasing the brain: from data to knowledge (Neuroinformatics), ch. 22. New York: Wiley."},{"key":"9039_CR42","first-page":"279","volume":"25","author":"C. Vogt","year":"1919","unstructured":"Vogt, C., & Vogt, O. (1919). Ergebnisse unserer Hirnforschung. 1.-4. Mitteilung. Journal of Psychology and Neurology, 25, 279\u2013461.","journal-title":"Journal of Psychology and Neurology"},{"key":"9039_CR43","first-page":"1534","volume":"3","author":"K. J. Worsley","year":"2005","unstructured":"Worsley, K. J., Charil, A., Lerch, J., & Evans, A. C. (2005). Connectivity of anatomical and functional MRI data. Neural Networks, 3, 1534\u20131541.","journal-title":"Neural Networks"},{"key":"9039_CR44","doi-asserted-by":"crossref","first-page":"527","DOI":"10.1093\/cercor\/13.5.527","volume":"13","author":"Y. Zhong","year":"2003","unstructured":"Zhong, Y., & Rockland, K. S. (2003). Inferior parietal lobule projections to anterior inferotemporal cortex (area TE) in macaque monkey. Cerebral Cortex (New York, N.Y.), 13, 527\u2013540. doi: 10.1093\/cercor\/13.5.527 .","journal-title":"Cerebral Cortex (New York, N.Y.)"}],"container-title":["Neuroinformatics"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/s12021-008-9039-5.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/article\/10.1007\/s12021-008-9039-5\/fulltext.html","content-type":"text\/html","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/s12021-008-9039-5","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2019,6,1]],"date-time":"2019-06-01T21:57:20Z","timestamp":1559426240000},"score":1,"resource":{"primary":{"URL":"http:\/\/link.springer.com\/10.1007\/s12021-008-9039-5"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2009,1,15]]},"references-count":44,"journal-issue":{"issue":"1","published-print":{"date-parts":[[2009,3]]}},"alternative-id":["9039"],"URL":"https:\/\/doi.org\/10.1007\/s12021-008-9039-5","relation":{},"ISSN":["1539-2791","1559-0089"],"issn-type":[{"value":"1539-2791","type":"print"},{"value":"1559-0089","type":"electronic"}],"subject":[],"published":{"date-parts":[[2009,1,15]]}}}