{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,10,18]],"date-time":"2025-10-18T10:46:51Z","timestamp":1760784411475},"reference-count":49,"publisher":"Springer Science and Business Media LLC","issue":"3-4","license":[{"start":{"date-parts":[[2018,2,5]],"date-time":"2018-02-05T00:00:00Z","timestamp":1517788800000},"content-version":"tdm","delay-in-days":0,"URL":"http:\/\/www.springer.com\/tdm"},{"start":{"date-parts":[[2018,2,5]],"date-time":"2018-02-05T00:00:00Z","timestamp":1517788800000},"content-version":"vor","delay-in-days":0,"URL":"http:\/\/www.springer.com\/tdm"}],"funder":[{"DOI":"10.13039\/100000076","name":"Directorate for Biological Sciences","doi-asserted-by":"publisher","award":["1641223"],"award-info":[{"award-number":["1641223"]}],"id":[{"id":"10.13039\/100000076","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/100000145","name":"Division of Information and Intelligent Systems","doi-asserted-by":"publisher","award":["1615035"],"award-info":[{"award-number":["1615035"]}],"id":[{"id":"10.13039\/100000145","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":["link.springer.com"],"crossmark-restriction":false},"short-container-title":["Neuroinform"],"published-print":{"date-parts":[[2018,10]]},"DOI":"10.1007\/s12021-018-9357-1","type":"journal-article","created":{"date-parts":[[2018,2,5]],"date-time":"2018-02-05T05:29:50Z","timestamp":1517808590000},"page":"473-488","update-policy":"http:\/\/dx.doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":7,"title":["Neuronal Activities in the Mouse Visual Cortex Predict Patterns of Sensory Stimuli"],"prefix":"10.1007","volume":"16","author":[{"given":"Lei","family":"Cai","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Bian","family":"Wu","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Shuiwang","family":"Ji","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"297","published-online":{"date-parts":[[2018,2,5]]},"reference":[{"issue":"6","key":"9357_CR1","doi-asserted-by":"publisher","first-page":"1106","DOI":"10.1152\/jn.1984.52.6.1106","volume":"52","author":"TD Albright","year":"1984","unstructured":"Albright, T.D. (1984). Direction and orientation selectivity of neurons in visual area mt of the macaque. Journal of neurophysiology, 52(6), 1106\u20131130.","journal-title":"Journal of neurophysiology"},{"key":"9357_CR2","unstructured":"Allen Brain Observatory. (2016). Technical White Paper: Overview."},{"key":"9357_CR3","unstructured":"Allen Brain Observatory. (2016). Technical Whitepaper: Stimulus Set And Response Analysis."},{"key":"9357_CR4","unstructured":"Allen Institute for Brain Science. (2016). Allen Brain Observatory [Internet]. \n                    http:\/\/observatory.brain-map.org\/\n                    \n                  ."},{"issue":"6","key":"9357_CR5","doi-asserted-by":"publisher","first-page":"1025","DOI":"10.1016\/j.neuron.2011.11.013","volume":"72","author":"ML Andermann","year":"2011","unstructured":"Andermann, M.L., Kerlin, A.M., Roumis, D.K., Glickfeld, L.L., Reid, R.C. (2011). Functional specialization of mouse higher visual cortical areas. Neuron, 72(6), 1025\u20131039.","journal-title":"Neuron"},{"key":"9357_CR6","unstructured":"Bethge, M., & Kayser, C. (2007). Do we know what the early visual system computes?. In 31st G\u00f6ttingen Neurobiology Conference."},{"issue":"12","key":"9357_CR7","doi-asserted-by":"publisher","first-page":"e1003,963","DOI":"10.1371\/journal.pcbi.1003963","volume":"10","author":"CF Cadieu","year":"2014","unstructured":"Cadieu, C.F., Hong, H., Yamins, D.L., Pinto, N., Ardila, D., Solomon, E.A., Majaj, N.J., DiCarlo, J.J. (2014). Deep neural networks rival the representation of primate IT cortex for core visual object recognition. PLOS Computational Biology, 10(12), e1003,963.","journal-title":"PLOS Computational Biology"},{"issue":"9","key":"9357_CR8","doi-asserted-by":"publisher","first-page":"3749","DOI":"10.1523\/JNEUROSCI.13-09-03749.1993","volume":"13","author":"TA Coogan","year":"1993","unstructured":"Coogan, T.A., & Burkhalter, A. (1993). Hierarchical organization of areas in rat visual cortex. The Journal of neuroscience, 13(9), 3749\u20133772.","journal-title":"The Journal of neuroscience"},{"issue":"31","key":"9357_CR9","doi-asserted-by":"publisher","first-page":"6991","DOI":"10.1523\/JNEUROSCI.1422-04.2004","volume":"24","author":"SV David","year":"2004","unstructured":"David, S.V., Vinje, W.E., Gallant, J.L. (2004). Natural stimulus statistics alter the receptive field structure of v1 neurons. The Journal of Neuroscience, 24(31), 6991\u20137006.","journal-title":"The Journal of Neuroscience"},{"key":"9357_CR10","doi-asserted-by":"publisher","first-page":"71","DOI":"10.1016\/j.ymeth.2014.07.011","volume":"73","author":"A Fakhry","year":"2015","unstructured":"Fakhry, A., & Ji, S. (2015). High-resolution prediction of mouse brain connectivity using gene expression patterns. Methods, 73, 71\u201378.","journal-title":"Methods"},{"issue":"2","key":"9357_CR11","doi-asserted-by":"publisher","first-page":"107","DOI":"10.1007\/s40708-015-0014-2","volume":"2","author":"A Fakhry","year":"2015","unstructured":"Fakhry, A., Zeng, T., Peng, H., Ji, S. (2015). Global analysis of gene expression and projection target correlations in the mouse brain. Brain Informatics, 2(2), 107\u2013117.","journal-title":"Brain Informatics"},{"issue":"1","key":"9357_CR12","doi-asserted-by":"publisher","first-page":"e1001,049","DOI":"10.1371\/journal.pcbi.1001049","volume":"7","author":"L French","year":"2011","unstructured":"French, L., & Pavlidis, P. (2011). Relationships between gene expression and brain wiring in the adult rodent brain. PLOS Computational Biology, 7(1), e1001,049.","journal-title":"PLOS Computational Biology"},{"issue":"37","key":"9357_CR13","doi-asserted-by":"publisher","first-page":"12,587","DOI":"10.1523\/JNEUROSCI.1124-14.2014","volume":"34","author":"ME Garrett","year":"2014","unstructured":"Garrett, M.E., Nauhaus, I., Marshel, J.H., Callaway, E.M. (2014). Topography and areal organization of mouse visual cortex. The Journal of Neuroscience, 34(37), 12,587\u201312,600.","journal-title":"The Journal of Neuroscience"},{"issue":"1","key":"9357_CR14","doi-asserted-by":"publisher","first-page":"301","DOI":"10.1152\/jn.1999.82.1.301","volume":"82","author":"SV Girman","year":"1999","unstructured":"Girman, S.V., Sauv\u00e9, Y., Lund, R.D. (1999). Receptive field properties of single neurons in rat primary visual cortex. Journal of neurophysiology, 82(1), 301\u2013311.","journal-title":"Journal of neurophysiology"},{"issue":"5","key":"9357_CR15","doi-asserted-by":"publisher","first-page":"1698","DOI":"10.1073\/pnas.86.5.1698","volume":"86","author":"CM Gray","year":"1989","unstructured":"Gray, C.M., & Singer, W. (1989). Stimulus-specific neuronal oscillations in orientation columns of cat visual cortex. Proceedings of the National Academy of Sciences, 86(5), 1698\u20131702.","journal-title":"Proceedings of the National Academy of Sciences"},{"issue":"7","key":"9357_CR16","doi-asserted-by":"publisher","first-page":"749","DOI":"10.1038\/nn.2140","volume":"11","author":"DS Greenberg","year":"2008","unstructured":"Greenberg, D.S., Houweling, A.R., Kerr, J.N. (2008). Population imaging of ongoing neuronal activity in the visual cortex of awake rats. Nature neuroscience, 11(7), 749\u2013751.","journal-title":"Nature neuroscience"},{"issue":"5","key":"9357_CR17","doi-asserted-by":"publisher","first-page":"686","DOI":"10.1038\/nn1445","volume":"8","author":"JD Haynes","year":"2005","unstructured":"Haynes, J.D., & Rees, G. (2005). Predicting the orientation of invisible stimuli from activity in human primary visual cortex. Nature neuroscience, 8(5), 686\u2013691.","journal-title":"Nature neuroscience"},{"key":"9357_CR18","unstructured":"Hinton, G.E., & Roweis, S.T. (2003). Stochastic neighbor embedding. In Advances in Neural Information Processing Systems 15 (pp. 857\u2013864)."},{"issue":"1","key":"9357_CR19","doi-asserted-by":"publisher","first-page":"215","DOI":"10.1113\/jphysiol.1968.sp008455","volume":"195","author":"DH Hubel","year":"1968","unstructured":"Hubel, D.H., & Wiesel, T.N. (1968). Receptive fields and functional architecture of monkey striate cortex. The Journal of physiology, 195(1), 215\u2013243.","journal-title":"The Journal of physiology"},{"issue":"23","key":"9357_CR20","doi-asserted-by":"publisher","first-page":"3293","DOI":"10.1093\/bioinformatics\/btr558","volume":"27","author":"S Ji","year":"2011","unstructured":"Ji, S. (2011). Computational network analysis of the anatomical and genetic organizations in the mouse brain. Bioinformatics, 27(23), 3293\u20133299.","journal-title":"Bioinformatics"},{"key":"9357_CR21","doi-asserted-by":"publisher","first-page":"222","DOI":"10.1186\/1471-2105-14-222","volume":"14","author":"S Ji","year":"2013","unstructured":"Ji, S. (2013). Computational genetic neuroanatomy of the developing mouse brain: dimensionality reduction, visualization, and clustering. BMC Bioinformatics, 14, 222.","journal-title":"BMC Bioinformatics"},{"issue":"1","key":"9357_CR22","doi-asserted-by":"publisher","first-page":"245","DOI":"10.1016\/j.neuroimage.2013.08.049","volume":"84","author":"S Ji","year":"2014","unstructured":"Ji, S., Fakhry, A., Deng, H. (2014). Integrative analysis of the connectivity and gene expression atlases in the mouse brain. NeuroImage, 84(1), 245\u2013253.","journal-title":"NeuroImage"},{"issue":"5","key":"9357_CR23","doi-asserted-by":"publisher","first-page":"679","DOI":"10.1038\/nn1444","volume":"8","author":"Y Kamitani","year":"2005","unstructured":"Kamitani, Y., & Tong, F. (2005). Decoding the visual and subjective contents of the human brain. Nature neuroscience, 8(5), 679\u2013685.","journal-title":"Nature neuroscience"},{"issue":"8","key":"9357_CR24","doi-asserted-by":"publisher","first-page":"e1005,064","DOI":"10.1371\/journal.pcbi.1005064","volume":"12","author":"L Kirsch","year":"2016","unstructured":"Kirsch, L., & Chechik, G. (2016). On expression patterns and developmental origin of human brain regions. PLOS Computational Biology, 12(8), e1005,064.","journal-title":"PLOS Computational Biology"},{"issue":"12","key":"9357_CR25","doi-asserted-by":"publisher","first-page":"e1002,790","DOI":"10.1371\/journal.pcbi.1002790","volume":"8","author":"L Kirsch","year":"2012","unstructured":"Kirsch, L., Liscovitch, N., Chechik, G. (2012). Localizing genes to cerebellar layers by classifying ish images. PLOS Computational Biology, 8(12), e1002,790.","journal-title":"PLOS Computational Biology"},{"issue":"7553","key":"9357_CR26","doi-asserted-by":"publisher","first-page":"436","DOI":"10.1038\/nature14539","volume":"521","author":"Y LeCun","year":"2015","unstructured":"LeCun, Y., Bengio, Y., Hinton, G. (2015). Deep learning. Nature, 521(7553), 436\u2013444.","journal-title":"Nature"},{"issue":"9","key":"9357_CR27","doi-asserted-by":"publisher","first-page":"e1003,185","DOI":"10.1371\/journal.pcbi.1003185","volume":"9","author":"N Liscovitch","year":"2013","unstructured":"Liscovitch, N., & Chechik, G. (2013). Specialization of gene expression during mouse brain development. PLOS Computational Biology, 9(9), e1003,185.","journal-title":"PLOS Computational Biology"},{"issue":"1","key":"9357_CR28","doi-asserted-by":"publisher","first-page":"577","DOI":"10.1146\/annurev.ne.19.030196.003045","volume":"19","author":"NK Logothetis","year":"1996","unstructured":"Logothetis, N.K., & Sheinberg, D.L. (1996). Visual object recognition. Annual review of neuroscience, 19(1), 577\u2013621.","journal-title":"Annual review of neuroscience"},{"issue":"1","key":"9357_CR29","doi-asserted-by":"publisher","first-page":"24","DOI":"10.1152\/jn.1997.77.1.24","volume":"77","author":"SJ Luck","year":"1997","unstructured":"Luck, S.J., Chelazzi, L., Hillyard, S.A., Desimone, R. (1997). Neural mechanisms of spatial selective attention in areas v1, v2, and v4 of macaque visual cortex. Journal of neurophysiology, 77(1), 24\u2013 42.","journal-title":"Journal of neurophysiology"},{"key":"9357_CR30","first-page":"2579","volume":"9","author":"LVD Maaten","year":"2008","unstructured":"Maaten, L.V.D., & Hinton, G. (2008). Visualizing data using t-sne. Journal of Machine Learning Research, 9, 2579\u20132605.","journal-title":"Journal of Machine Learning Research"},{"issue":"1","key":"9357_CR31","doi-asserted-by":"publisher","first-page":"203","DOI":"10.1002\/cne.901930114","volume":"193","author":"NJ Mangini","year":"1980","unstructured":"Mangini, N.J., & Pearlman, A.L. (1980). Laminar distribution of receptive field properties in the primary visual cortex of the mouse. The Journal of comparative neurology, 193(1), 203\u2013222.","journal-title":"The Journal of comparative neurology"},{"issue":"6","key":"9357_CR32","doi-asserted-by":"publisher","first-page":"1040","DOI":"10.1016\/j.neuron.2011.12.004","volume":"72","author":"JH Marshel","year":"2011","unstructured":"Marshel, J.H., Garrett, M.E., Nauhaus, I., Callaway, E.M. (2011). Functional specialization of seven mouse visual cortical areas. Neuron, 72(6), 1040\u20131054.","journal-title":"Neuron"},{"issue":"6","key":"9357_CR33","doi-asserted-by":"publisher","first-page":"889","DOI":"10.1016\/j.neuron.2011.12.011","volume":"72","author":"CM Niell","year":"2011","unstructured":"Niell, C.M. (2011). Exploring the next frontier of mouse vision. Neuron, 72(6), 889\u2013892.","journal-title":"Neuron"},{"issue":"7495","key":"9357_CR34","doi-asserted-by":"publisher","first-page":"207","DOI":"10.1038\/nature13186","volume":"508","author":"SW Oh","year":"2014","unstructured":"Oh, S.W., Harris, J.A., Ng, L., Winslow, B., Cain, N., Mihalas, S., Wang, Q., Lau, C., Kuan, L., Henry, A.M., et al. (2014). A mesoscale connectome of the mouse brain. Nature, 508(7495), 207\u2013214.","journal-title":"Nature"},{"issue":"5516","key":"9357_CR35","doi-asserted-by":"publisher","first-page":"510","DOI":"10.1126\/science.1057099","volume":"292","author":"A Pascual-Leone","year":"2001","unstructured":"Pascual-Leone, A., & Walsh, V. (2001). Fast backprojections from the motion to the primary visual area necessary for visual awareness. Science, 292(5516), 510\u2013512.","journal-title":"Science"},{"key":"9357_CR36","first-page":"101","volume":"5","author":"R Rifkin","year":"2004","unstructured":"Rifkin, R., & Klautau, A. (2004). In defense of one-vs-all classification. Journal of machine learning research, 5, 101\u2013141.","journal-title":"Journal of machine learning research"},{"issue":"39","key":"9357_CR37","doi-asserted-by":"publisher","first-page":"12,978","DOI":"10.1523\/JNEUROSCI.0179-10.2010","volume":"30","author":"NC Rust","year":"2010","unstructured":"Rust, N.C., & DiCarlo, J.J. (2010). Selectivity and tolerance (invariance) both increase as visual information propagates from cortical area v4 to it. The Journal of Neuroscience, 30(39), 12,978\u201312,995.","journal-title":"The Journal of Neuroscience"},{"issue":"12","key":"9357_CR38","doi-asserted-by":"publisher","first-page":"1864","DOI":"10.1038\/nn.3567","volume":"16","author":"AB Saleem","year":"2013","unstructured":"Saleem, A.B., Ayaz, A., Jeffery, K.J., Harris, K.D., Carandini, M. (2013). Integration of visual motion and locomotion in mouse visual cortex. Nature Neuroscience, 16(12), 1864\u20131869.","journal-title":"Nature Neuroscience"},{"issue":"10","key":"9357_CR39","doi-asserted-by":"publisher","first-page":"3586","DOI":"10.1523\/JNEUROSCI.3484-13.2014","volume":"34","author":"S Saproo","year":"2014","unstructured":"Saproo, S., & Serences, J.T. (2014). Attention improves transfer of motion information between v1 and mt. The Journal of Neuroscience, 34(10), 3586\u20133596.","journal-title":"The Journal of Neuroscience"},{"issue":"6","key":"9357_CR40","doi-asserted-by":"publisher","first-page":"1320","DOI":"10.1152\/jn.1976.39.6.1320","volume":"39","author":"PH Schiller","year":"1976","unstructured":"Schiller, P.H., Finlay, B.L., Volman, S.F. (1976). Quantitative studies of single-cell properties in monkey striate cortex. ii. orientation specificity and ocular dominance. Journal of neurophysiology, 39(6), 1320\u20131333.","journal-title":"Journal of neurophysiology"},{"key":"9357_CR41","unstructured":"Serre, T., Wolf, L., Poggio, T. (2005). Object recognition with features inspired by visual cortex. In 2005 IEEE Computer Society Conference on Computer Vision and Pattern Recognition (CVPR\u201905) (Vol. 2, pp. 994\u20131000): IEEE."},{"issue":"5295","key":"9357_CR42","doi-asserted-by":"publisher","first-page":"2110","DOI":"10.1126\/science.274.5295.2110","volume":"274","author":"BR Sheth","year":"1996","unstructured":"Sheth, B.R., Sharma, J., Rao, S.C., Sur, M. (1996). Orientation maps of subjective contours in visual cortex. Science, 274(5295), 2110.","journal-title":"Science"},{"issue":"12","key":"9357_CR43","doi-asserted-by":"publisher","first-page":"7319","DOI":"10.1073\/pnas.1232232100","volume":"100","author":"C Stosiek","year":"2003","unstructured":"Stosiek, C., Garaschuk, O., Holthoff, K., Konnerth, A. (2003). In vivo two-photon calcium imaging of neuronal networks. Proceedings of the National Academy of Sciences, 100(12), 7319\u20137324.","journal-title":"Proceedings of the National Academy of Sciences"},{"issue":"11","key":"9357_CR44","doi-asserted-by":"publisher","first-page":"7","DOI":"10.1167\/10.11.7","volume":"10","author":"H Takemura","year":"2010","unstructured":"Takemura, H., & Murakami, I. (2010). Visual motion detection sensitivity is enhanced by an orthogonal motion aftereffect. Journal of vision, 10(11), 7\u20137.","journal-title":"Journal of vision"},{"issue":"1","key":"9357_CR45","doi-asserted-by":"publisher","first-page":"404","DOI":"10.1152\/jn.00015.2005","volume":"96","author":"AF Teich","year":"2006","unstructured":"Teich, A.F., & Qian, N. (2006). Comparison among some models of orientation selectivity. Journal of neurophysiology, 96(1), 404\u2013419.","journal-title":"Journal of neurophysiology"},{"issue":"4","key":"9357_CR46","doi-asserted-by":"publisher","first-page":"1428","DOI":"10.1152\/jn.1994.71.4.1428","volume":"71","author":"R Vogels","year":"1994","unstructured":"Vogels, R., & Orban, G. (1994). Activity of inferior temporal neurons during orientation discrimination with successively presented gratings. Journal of Neurophysiology, 71(4), 1428\u20131451.","journal-title":"Journal of Neurophysiology"},{"issue":"5","key":"9357_CR47","doi-asserted-by":"publisher","first-page":"e1002,040","DOI":"10.1371\/journal.pcbi.1002040","volume":"7","author":"L Wolf","year":"2011","unstructured":"Wolf, L., Goldberg, C., Manor, N., Sharan, R., Ruppin, E. (2011). Gene expression in the rodent brain is associated with its regional connectivity. PLOS Computational Biology, 7(5), e1002,040.","journal-title":"PLOS Computational Biology"},{"issue":"23","key":"9357_CR48","doi-asserted-by":"publisher","first-page":"8619","DOI":"10.1073\/pnas.1403112111","volume":"111","author":"DL Yamins","year":"2014","unstructured":"Yamins, D.L., Hong, H., Cadieu, C.F., Solomon, E.A., Seibert, D., DiCarlo, J.J. (2014). Performance-optimized hierarchical models predict neural responses in higher visual cortex. Proceedings of the National Academy of Sciences, 111(23), 8619\u20138624.","journal-title":"Proceedings of the National Academy of Sciences"},{"issue":"5","key":"9357_CR49","doi-asserted-by":"publisher","first-page":"573","DOI":"10.1109\/LSP.2014.2310494","volume":"21","author":"C Yan","year":"2014","unstructured":"Yan, C., Zhang, Y., Xu, J., Dai, F., Li, L., Dai, Q., Wu, F. (2014). A highly parallel framework for hevc coding unit partitioning tree decision on many-core processors. IEEE Signal Processing Letters, 21(5), 573\u2013576.","journal-title":"IEEE Signal Processing Letters"}],"container-title":["Neuroinformatics"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/link.springer.com\/article\/10.1007\/s12021-018-9357-1\/fulltext.html","content-type":"text\/html","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/s12021-018-9357-1.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/s12021-018-9357-1.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2020,5,17]],"date-time":"2020-05-17T16:16:21Z","timestamp":1589732181000},"score":1,"resource":{"primary":{"URL":"http:\/\/link.springer.com\/10.1007\/s12021-018-9357-1"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2018,2,5]]},"references-count":49,"journal-issue":{"issue":"3-4","published-print":{"date-parts":[[2018,10]]}},"alternative-id":["9357"],"URL":"https:\/\/doi.org\/10.1007\/s12021-018-9357-1","relation":{},"ISSN":["1539-2791","1559-0089"],"issn-type":[{"value":"1539-2791","type":"print"},{"value":"1559-0089","type":"electronic"}],"subject":[],"published":{"date-parts":[[2018,2,5]]},"assertion":[{"value":"5 February 2018","order":1,"name":"first_online","label":"First Online","group":{"name":"ArticleHistory","label":"Article History"}}]}}