{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,3,1]],"date-time":"2026-03-01T05:16:39Z","timestamp":1772342199536,"version":"3.50.1"},"reference-count":90,"publisher":"Springer Science and Business Media LLC","issue":"1","license":[{"start":{"date-parts":[[2022,10,3]],"date-time":"2022-10-03T00:00:00Z","timestamp":1664755200000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.springernature.com\/gp\/researchers\/text-and-data-mining"},{"start":{"date-parts":[[2022,10,3]],"date-time":"2022-10-03T00:00:00Z","timestamp":1664755200000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/www.springernature.com\/gp\/researchers\/text-and-data-mining"}],"funder":[{"name":"KIAS individual grant","award":["CG077002"],"award-info":[{"award-number":["CG077002"]}]},{"name":"KIAS individual grant","award":["CG076002"],"award-info":[{"award-number":["CG076002"]}]},{"name":"KIAS individual grant","award":["CG035003"],"award-info":[{"award-number":["CG035003"]}]}],"content-domain":{"domain":["link.springer.com"],"crossmark-restriction":false},"short-container-title":["Neuroinform"],"published-print":{"date-parts":[[2023,1]]},"DOI":"10.1007\/s12021-022-09605-3","type":"journal-article","created":{"date-parts":[[2022,10,3]],"date-time":"2022-10-03T02:02:31Z","timestamp":1664762551000},"page":"177-193","update-policy":"https:\/\/doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":5,"title":["Polymer Physics-Based Classification of Neurons"],"prefix":"10.1007","volume":"21","author":[{"given":"Kiri","family":"Choi","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Won Kyu","family":"Kim","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Changbong","family":"Hyeon","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"297","published-online":{"date-parts":[[2022,10,3]]},"reference":[{"key":"9605_CR1","doi-asserted-by":"crossref","unstructured":"Andrews, D.G. (2019). A new method for measuring the size of nematodes using image processing. Biology Methods and Protocols, 4, bpz020.","DOI":"10.1093\/biomethods\/bpz020"},{"key":"9605_CR2","doi-asserted-by":"publisher","DOI":"10.7554\/eLife.04577","volume":"3","author":"Y Aso","year":"2014","unstructured":"Aso, Y., Hattori, D., Yu, Y., Johnston, R. M., Iyer, N. A., Ngo, T. -T., et al. (2014). The neuronal architecture of the mushroom body provides a logic for associative learning. eLife, 3,","journal-title":"eLife"},{"key":"9605_CR3","doi-asserted-by":"publisher","first-page":"e1006175","DOI":"10.1371\/journal.pcbi.1006175","volume":"14","author":"JH Bak","year":"2018","unstructured":"Bak, J. H., Jang, S. J., & Hyeon, C. (2018). Implications for human odor sensing revealed from the statistics of odorant-receptor interactions. PLoS Computational Biology, 14, e1006175.","journal-title":"PLoS Computational Biology"},{"key":"9605_CR4","first-page":"440","volume":"69","author":"FB Baker","year":"1974","unstructured":"Baker, F. B. (1974). Stability of two hierarchical grouping techniques case i: Sensitivity to data errors. Journal of the American Statistical Association, 69, 440\u2013445.","journal-title":"Journal of the American Statistical Association"},{"key":"9605_CR5","doi-asserted-by":"publisher","first-page":"596","DOI":"10.1103\/PhysRevLett.53.596","volume":"53","author":"HD Bale","year":"1984","unstructured":"Bale, H. D., & Schmidt, P. W. (1984). Small-angle x-ray-scattering investigation of submicroscopic porosity with fractal properties. Physical Review Letters, 53, 596.","journal-title":"Physical Review Letters"},{"key":"9605_CR6","doi-asserted-by":"publisher","first-page":"3183","DOI":"10.1016\/j.cub.2020.06.042","volume":"30","author":"AS Bates","year":"2020","unstructured":"Bates, A. S., Schlegel, P., Roberts, R. J., Drummond, N., Tamimi, I. F., Turnbull, R., Zhao, X., Marin, E. C., Popovici, P. D., Dhawan, S., et al. (2020). Complete connectomic reconstruction of olfactory projection neurons in the fly brain. Current Biology, 30, 3183\u20133199.","journal-title":"Current Biology"},{"key":"9605_CR7","doi-asserted-by":"crossref","unstructured":"Buccino, A. P., Ness, T. V., Einevoll, G. T., Cauwenberghs, G., & H\u00e4fliger, P. D. (2018). A deep learning approach for the classification of neuronal cell types. In 2018 40th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC) (pp. 999\u20131002). IEEE.","DOI":"10.1109\/EMBC.2018.8512498"},{"key":"9605_CR8","doi-asserted-by":"publisher","first-page":"175","DOI":"10.1016\/0092-8674(91)90418-X","volume":"65","author":"L Buck","year":"1991","unstructured":"Buck, L., & Axel, R. (1991). A novel multigene family may encode odorant receptors: a molecular basis for odor recognition. Cell, 65, 175\u2013187.","journal-title":"Cell"},{"key":"9605_CR9","doi-asserted-by":"publisher","first-page":"2185","DOI":"10.1002\/cne.23037","volume":"520","author":"NJ Butcher","year":"2012","unstructured":"Butcher, N. J., Friedrich, A. B., Lu, Z., Tanimoto, H., & Meinertzhagen, I. A. (2012). Different classes of input and output neurons reveal new features in microglomeruli of the adult Drosophila mushroom body calyx. The Journal of Comparative Neurology, 520, 2185\u20132201.","journal-title":"The Journal of Comparative Neurology"},{"key":"9605_CR10","doi-asserted-by":"publisher","first-page":"133","DOI":"10.1016\/0165-0270(94)00115-W","volume":"56","author":"F Caserta","year":"1995","unstructured":"Caserta, F., Eldred, W., Fernandez, E., Hausman, R., Stanford, L., Bulderev, S., Schwarzer, S., & Stanley, H. (1995). Determination of fractal dimension of physiologically characterized neurons in two and three dimensions. Journal of Neuroscience Methods, 56, 133\u2013144.","journal-title":"Journal of Neuroscience Methods"},{"key":"9605_CR11","doi-asserted-by":"crossref","unstructured":"Chaikin, P. M., Lubensky, T. C., & Witten, T. A. (1995). Principles of condensed matter physics\u00a0(Vol. 10). Cambridge University Press; Cambridge.","DOI":"10.1017\/CBO9780511813467"},{"key":"9605_CR12","doi-asserted-by":"publisher","first-page":"145","DOI":"10.1016\/S0079-6123(07)68012-1","volume":"168","author":"N Chatterjee","year":"2007","unstructured":"Chatterjee, N., & Sinha, S. (2007). Understanding the mind of a worm: Hierarchical network structure underlying nervous system function in C. elegans. Progress in Brain Research, 168, 145\u2013153.","journal-title":"Progress in Brain Research"},{"key":"9605_CR13","doi-asserted-by":"crossref","unstructured":"Chatzigeorgiou, M., Yoo, S., Watson, J. D., Lee, W. -H., Spencer, W. C., Kindt, K. S., Hwang, S. W., Miller, D. M., III., Treinin, M., Driscoll, M., et al. (2010). Specific roles for DEG\/ENaC and TRP channels in touch and thermosensation in c. elegans nociceptors. Nature neuroscience, 13, 861\u2013868.","DOI":"10.1038\/nn.2581"},{"key":"9605_CR14","doi-asserted-by":"publisher","first-page":"249","DOI":"10.1016\/j.cell.2013.11.036","volume":"156","author":"JY Cho","year":"2014","unstructured":"Cho, J. Y., & Sternberg, P. W. (2014). Multilevel modulation of a sensory motor circuit during c. elegans sleep and arousal. Cell, 156, 249\u2013260.","journal-title":"Cell"},{"key":"9605_CR15","doi-asserted-by":"crossref","unstructured":"Choi, K., Kim, W. K., & Hyeon, C. (2022). Olfactory responses of drosophila are encoded in the organization of projection neurons. bioRxiv.","DOI":"10.7554\/eLife.77748.sa2"},{"key":"9605_CR16","doi-asserted-by":"publisher","first-page":"1535","DOI":"10.1016\/j.cub.2005.07.034","volume":"15","author":"A Couto","year":"2005","unstructured":"Couto, A., Alenius, M., & Dickson, B. J. (2005). Molecular, anatomical, and functional organization of the Drosophila olfactory system. Current Biology, 15, 1535\u20131547.","journal-title":"Current Biology"},{"key":"9605_CR17","first-page":"804","volume":"8","author":"M Daoud","year":"1975","unstructured":"Daoud, M., Cotton, J. P., Farnoux, B., Jannink, G., Sarma, G., Benoit, H., Duplessix, R., Picot, C., & de Gennes, P. G. (1975). Solutions of flexible polymers. Neutron Experiments and Interpretation. Macromolecules, 8, 804.","journal-title":"Neutron Experiments and Interpretation. Macromolecules"},{"key":"9605_CR18","doi-asserted-by":"publisher","first-page":"973","DOI":"10.1051\/jphys:01976003707-8097300","volume":"37","author":"M Daoud","year":"1976","unstructured":"Daoud, M., & Jannink, G. (1976). Temperature-concentration diagram of polymer solutions. Journal of Physics, 37, 973\u2013979.","journal-title":"Journal of Physics"},{"key":"9605_CR19","doi-asserted-by":"publisher","first-page":"1359","DOI":"10.1051\/jphys:0198100420100135900","volume":"42","author":"M Daoud","year":"1981","unstructured":"Daoud, M., & Joanny, J. (1981). Conformation of branched polymers. Journal of Physics, 42, 1359\u20131371.","journal-title":"Journal of Physics"},{"key":"9605_CR20","volume-title":"Scaling concepts in polymer physics","author":"P-G De Gennes","year":"1979","unstructured":"De Gennes, P. -G. (1979). Scaling concepts in polymer physics. Cornell University Press."},{"key":"9605_CR21","doi-asserted-by":"publisher","first-page":"679","DOI":"10.1063\/1.1722830","volume":"28","author":"P Debye","year":"1957","unstructured":"Debye, P., Anderson, H., Jr., & Brumberger, H. (1957). Scattering by an inhomogeneous solid. II. The correlation function and its application. Journal of Applied Physics, 28, 679\u2013683.","journal-title":"Journal of Applied Physics"},{"key":"9605_CR22","doi-asserted-by":"publisher","first-page":"138","DOI":"10.1038\/s41593-019-0550-9","volume":"23","author":"SE de Vries","year":"2020","unstructured":"de Vries, S. E., Lecoq, J. A., Buice, M. A., Groblewski, P. A., Ocker, G. K., Oliver, M., Feng, D., Cain, N., Ledochowitsch, P., Millman, D., et al. (2020). A large-scale standardized physiological survey reveals functional organization of the mouse visual cortex. Nature Neuroscience, 23, 138\u2013151.","journal-title":"Nature Neuroscience"},{"key":"9605_CR23","doi-asserted-by":"publisher","first-page":"2379","DOI":"10.1016\/j.cub.2016.07.008","volume":"26","author":"CA D\u00edaz-Balzac","year":"2016","unstructured":"D\u00edaz-Balzac, C. A., Rahman, M., L\u00e1zaro-Pe\u00f1a, M. I., Hernandez, L. A. M., Salzberg, Y., Aguirre-Chen, C., Kaprielian, Z., & B\u00fclow, H. E. (2016). Muscle-and skin-derived cues jointly orchestrate patterning of somatosensory dendrites. Current Biology, 26, 2379\u20132387.","journal-title":"Current Biology"},{"key":"9605_CR24","unstructured":"Doi, M., Edwards, S. F., & Edwards, S. F. (1988). The theory of polymer dynamics\u00a0(Vol. 73). Oxford University Press."},{"key":"9605_CR25","doi-asserted-by":"publisher","first-page":"4233","DOI":"10.1063\/1.451884","volume":"86","author":"B Duplantier","year":"1987","unstructured":"Duplantier, B. (1987). Geometry of polymer chains near the theta-point and dimensional regularization. The Journal of Chemical Physics, 86, 4233\u20134244.","journal-title":"The Journal of Chemical Physics"},{"key":"9605_CR26","doi-asserted-by":"crossref","unstructured":"Felleman, D. J., & Van Essen, D. C. (1991). Distributed hierarchical processing in the primate cerebral cortex. Cerebral Cortex (New York, NY: 1991), 1, 1\u201347.","DOI":"10.1093\/cercor\/1.1.1"},{"key":"9605_CR27","doi-asserted-by":"publisher","first-page":"780","DOI":"10.1038\/77680","volume":"3","author":"Q Gao","year":"2000","unstructured":"Gao, Q., Yuan, B., & Chess, A. (2000). Convergent projections of drosophila olfactory neurons to specific glomeruli in the antennal lobe. Nature Neuroscience, 3, 780\u2013785.","journal-title":"Nature Neuroscience"},{"key":"9605_CR28","doi-asserted-by":"publisher","first-page":"219","DOI":"10.1038\/nn.3300","volume":"16","author":"LL Glickfeld","year":"2013","unstructured":"Glickfeld, L. L., Andermann, M. L., Bonin, V., & Reid, R. C. (2013). Cortico-cortical projections in mouse visual cortex are functionally target specific. Nature Neuroscience, 16, 219\u2013226.","journal-title":"Nature Neuroscience"},{"key":"9605_CR29","doi-asserted-by":"publisher","first-page":"1182","DOI":"10.1038\/s41593-019-0417-0","volume":"22","author":"NW Gouwens","year":"2019","unstructured":"Gouwens, N. W., Sorensen, S. A., Berg, J., Lee, C., Jarsky, T., Ting, J., Sunkin, S. M., Feng, D., Anastassiou, C. A., Barkan, E., et al. (2019). Classification of electrophysiological and morphological neuron types in the mouse visual cortex. Nature Neuroscience, 22, 1182\u20131195.","journal-title":"Nature Neuroscience"},{"key":"9605_CR30","doi-asserted-by":"publisher","first-page":"171","DOI":"10.1063\/1.4823390","volume":"9","author":"AY Grosberg","year":"1995","unstructured":"Grosberg, A. Y., Khokhlov, A. R., Stanley, H. E., Mallinckrodt, A. J., & McKay, S. (1995). Statistical physics of macromolecules. Computers in Physics, 9, 171\u2013172.","journal-title":"Computers in Physics"},{"key":"9605_CR31","doi-asserted-by":"publisher","first-page":"1821","DOI":"10.1038\/nn.3547","volume":"16","author":"E Gruntman","year":"2013","unstructured":"Gruntman, E., & Turner, G. C. (2013). Integration of the olfactory code across dendritic claws of single mushroom body neurons. Nature Neuroscience, 16, 1821\u20131829.","journal-title":"Nature Neuroscience"},{"key":"9605_CR32","doi-asserted-by":"publisher","first-page":"51","DOI":"10.1038\/nature26159","volume":"556","author":"Y Han","year":"2018","unstructured":"Han, Y., Kebschull, J. M., Campbell, R. A., Cowan, D., Imhof, F., Zador, A. M., & Mrsic-Flogel, T. D. (2018). The logic of single-cell projections from visual cortex. Nature, 556, 51\u201356.","journal-title":"Nature"},{"key":"9605_CR33","doi-asserted-by":"publisher","first-page":"195","DOI":"10.1038\/s41586-019-1716-z","volume":"575","author":"JA Harris","year":"2019","unstructured":"Harris, J. A., Mihalas, S., Hirokawa, K. E., Whitesell, J. D., Choi, H., Bernard, A., Bohn, P., Caldejon, S., Casal, L., Cho, A., et al. (2019). Hierarchical organization of cortical and thalamic connectivity. Nature, 575, 195\u2013202.","journal-title":"Nature"},{"key":"9605_CR34","doi-asserted-by":"publisher","first-page":"15336","DOI":"10.1073\/pnas.011314898","volume":"98","author":"G Heimbeck","year":"2001","unstructured":"Heimbeck, G., Bugnon, V., Gendre, N., Keller, A., & Stocker, R. F. (2001). A central neural circuit for experience-independent olfactory and courtship behavior in drosophila melanogaster. Proceedings of the National Academy of Sciences, 98, 15336\u201315341.","journal-title":"Proceedings of the National Academy of Sciences"},{"key":"9605_CR35","doi-asserted-by":"publisher","first-page":"266","DOI":"10.1038\/nrn1074","volume":"4","author":"M Heisenberg","year":"2003","unstructured":"Heisenberg, M. (2003). Mushroom body memoir: From maps to models. Nature Reviews. Neuroscience, 4, 266\u2013275.","journal-title":"Nature Reviews. Neuroscience"},{"key":"9605_CR36","doi-asserted-by":"publisher","first-page":"413","DOI":"10.1016\/S0959-4388(03)00102-8","volume":"13","author":"M H\u00fcbener","year":"2003","unstructured":"H\u00fcbener, M. (2003). Mouse visual cortex. Current Opinion in Neurobiology, 13, 413\u2013420.","journal-title":"Current Opinion in Neurobiology"},{"key":"9605_CR37","doi-asserted-by":"publisher","first-page":"437","DOI":"10.1126\/science.1221762","volume":"337","author":"TA Jarrell","year":"2012","unstructured":"Jarrell, T. A., Wang, Y., Bloniarz, A. E., Brittin, C. A., Xu, M., Thomson, J. N., Albertson, D. G., Hall, D. H., & Emmons, S. W. (2012). The connectome of a decision-making neural network. Science, 337, 437\u2013444.","journal-title":"Science"},{"key":"9605_CR38","doi-asserted-by":"publisher","first-page":"1198","DOI":"10.1016\/j.neuron.2018.05.011","volume":"98","author":"JM Jeanne","year":"2018","unstructured":"Jeanne, J. M., Fi\u015fek, M., & Wilson, R. I. (2018). The organization of projections from olfactory glomeruli onto higher-order neurons. Neuron, 98, 1198\u20131213.","journal-title":"Neuron"},{"key":"9605_CR39","doi-asserted-by":"publisher","first-page":"1187","DOI":"10.1016\/j.cell.2007.01.040","volume":"128","author":"GS Jefferis","year":"2007","unstructured":"Jefferis, G. S., Potter, C. J., Chan, A. M., Marin, E. C., Rohlfing, T., Maurer, C. R., Jr., & Luo, L. (2007). Comprehensive maps of Drosophila higher olfactory centers: Spatially segregated fruit and pheromone representation. Cell, 128, 1187\u20131203.","journal-title":"Cell"},{"key":"9605_CR40","doi-asserted-by":"publisher","first-page":"632","DOI":"10.1016\/j.neuron.2015.07.004","volume":"87","author":"W Ji","year":"2015","unstructured":"Ji, W., G\u0103m\u0103nu\u0163, R., Bista, P., D\u2019Souza, R. D., Wang, Q., & Burkhalter, A. (2015). Modularity in the organization of mouse primary visual cortex. Neuron, 87, 632\u2013643.","journal-title":"Neuron"},{"key":"9605_CR41","unstructured":"Kandel, E. R., Schwartz, J. H., Jessell, T. M., Seigelbaum, S. A., & Hudspeth, A. J. (Eds.) (2013). Principles of Neural Science\u00a0(5th ed.). McGraw Hill."},{"key":"9605_CR42","doi-asserted-by":"publisher","first-page":"719","DOI":"10.1093\/bioinformatics\/btm563","volume":"24","author":"P Langfelder","year":"2008","unstructured":"Langfelder, P., Zhang, B., & Horvath, S. (2008). Defining clusters from a hierarchical cluster tree: the Dynamic Tree Cut package for R. Bioinformatics, 24, 719\u2013720.","journal-title":"Bioinformatics"},{"key":"9605_CR43","doi-asserted-by":"publisher","first-page":"591","DOI":"10.1007\/s12021-020-09461-z","volume":"18","author":"S Laturnus","year":"2020","unstructured":"Laturnus, S., Kobak, D., & Berens, P. (2020). A systematic evaluation of interneuron morphology representations for cell type discrimination. Neuroinformatics, 18, 591\u2013609.","journal-title":"Neuroinformatics"},{"key":"9605_CR44","doi-asserted-by":"crossref","unstructured":"Liao, M., Liang, X., & Howard, J. (2021). The narrowing of dendrite branches across nodes follows a well-defined scaling law (p. 118). National Academy of Sciences: Proceeddings.","DOI":"10.1073\/pnas.2022395118"},{"key":"9605_CR45","doi-asserted-by":"publisher","first-page":"2320","DOI":"10.1016\/j.bpj.2016.04.020","volume":"110","author":"L Liu","year":"2016","unstructured":"Liu, L., & Hyeon, C. (2016). Contact statistics highlight distinct organizing principles of proteins and RNA. Biophysical Journal, 110, 2320\u20132327.","journal-title":"Biophysical Journal"},{"key":"9605_CR46","doi-asserted-by":"publisher","first-page":"5667","DOI":"10.1021\/acs.nanolett.9b02224","volume":"19","author":"L Liu","year":"2019","unstructured":"Liu, L., Pincus, P. A., & Hyeon, C. (2019). Compressing \u0398-chain in slit geometry. Nano Letters, 19, 5667\u20135673.","journal-title":"Nano Letters"},{"key":"9605_CR47","doi-asserted-by":"publisher","first-page":"47","DOI":"10.1007\/s12021-014-9237-2","volume":"13","author":"Y Lu","year":"2015","unstructured":"Lu, Y., Carin, L., Coifman, R., Shain, W., & Roysam, B. (2015). Quantitative arbor analytics: Unsupervised harmonic co-clustering of populations of brain cell arbors based on l-measure. Neuroinformatics, 13, 47\u201363.","journal-title":"Neuroinformatics"},{"key":"9605_CR48","doi-asserted-by":"publisher","first-page":"1326","DOI":"10.1016\/j.cub.2011.06.063","volume":"21","author":"SM Maguire","year":"2011","unstructured":"Maguire, S. M., Clark, C. M., Nunnari, J., Pirri, J. K., & Alkema, M. J. (2011). The c. elegans touch response facilitates escape from predacious fungi. Current Biology, 21, 1326\u20131330.","journal-title":"Current Biology"},{"key":"9605_CR49","doi-asserted-by":"publisher","first-page":"363","DOI":"10.1038\/382363a0","volume":"382","author":"ZF Mainen","year":"1996","unstructured":"Mainen, Z. F., & Sejnowski, T. J. (1996). Influence of dendritic structure on firing pattern in model neocortical neurons. Nature, 382, 363\u2013366.","journal-title":"Nature"},{"key":"9605_CR50","doi-asserted-by":"publisher","first-page":"713","DOI":"10.1016\/S0092-8674(00)80581-4","volume":"96","author":"B Malnic","year":"1999","unstructured":"Malnic, B., Hirono, J., Sato, T., & Buck, L. B. (1999). Combinatorial receptor codes for odors. Cell, 96, 713\u2013723.","journal-title":"Cell"},{"key":"9605_CR51","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1186\/s12859-018-2470-1","volume":"19","author":"B Mihaljevi\u0107","year":"2018","unstructured":"Mihaljevi\u0107, B., Larra\u00f1aga, P., Benavides-Piccione, R., Hill, S., DeFelipe, J., & Bielza, C. (2018). Towards a supervised classification of neocortical interneuron morphologies. BMC Bioinformatics, 19, 1\u201322.","journal-title":"BMC Bioinformatics"},{"key":"9605_CR52","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1186\/1471-2202-14-66","volume":"14","author":"A Mohammadi","year":"2013","unstructured":"Mohammadi, A., Byrne Rodgers, J., Kotera, I., & Ryu, W. S. (2013). Behavioral response of caenorhabditis elegansto localized thermal stimuli. BMC Neuroscience, 14, 1\u201312.","journal-title":"BMC Neuroscience"},{"key":"9605_CR53","doi-asserted-by":"publisher","first-page":"99","DOI":"10.1038\/s41586-020-03169-5","volume":"591","author":"MW Moyle","year":"2021","unstructured":"Moyle, M. W., Barnes, K. M., Kuchroo, M., Gonopolskiy, A., Duncan, L. H., Sengupta, T., Shao, L., Guo, M., Santella, A., Christensen, R., et al. (2021). Structural and developmental principles of neuropil assembly in C. elegans. Nature, 591, 99\u2013104.","journal-title":"Nature"},{"key":"9605_CR54","doi-asserted-by":"publisher","first-page":"207","DOI":"10.1038\/nature13186","volume":"508","author":"SW Oh","year":"2014","unstructured":"Oh, S. W., Harris, J. A., Ng, L., Winslow, B., Cain, N., Mihalas, S., Wang, Q., Lau, C., Kuan, L., Henry, A. M., et al. (2014). A mesoscale connectome of the mouse brain. Nature, 508, 207\u2013214.","journal-title":"Nature"},{"key":"9605_CR55","first-page":"15","volume-title":"Projections of the mouse primary visual cortex","author":"A Resulaj","year":"2021","unstructured":"Resulaj, A. (2021). Projections of the mouse primary visual cortex (p. 15). Neural Circuits: Front."},{"key":"9605_CR56","doi-asserted-by":"publisher","first-page":"278","DOI":"10.1007\/s00422-002-0342-1","volume":"87","author":"D Ristanovi\u0107","year":"2002","unstructured":"Ristanovi\u0107, D., Nedeljkov, V., Stefanovi\u0107, B., Milo\u0161evi\u0107, N., Grgurevi\u0107, M., & \u0160tuli\u0107, V. (2002). Fractal and nonfractal analysis of cell images: Comparison and application to neuronal dendritic arborization. Biological Cybernetics, 87, 278\u2013288.","journal-title":"Biological Cybernetics"},{"key":"9605_CR57","doi-asserted-by":"publisher","first-page":"64","DOI":"10.1016\/j.neures.2014.04.005","volume":"84","author":"D Ristanovi\u0107","year":"2014","unstructured":"Ristanovi\u0107, D., Stefanovi\u0107, B. D., & Pu\u0161ka\u0161, N. (2014). Fractal analysis of dendrite morphology using modified box-counting method. Neuroscience Research, 84, 64\u201367.","journal-title":"Neuroscience Research"},{"key":"9605_CR58","unstructured":"Rosenberg, A., & Hirschberg, J. (2007). V-measure: a conditional entropy-based external cluster evaluation measure. In Proceedings of the 2007 joint conference on empirical methods in natural language processing and computational natural language learning (EMNLP-CoNLL) (pp. 410\u2013420)."},{"key":"9605_CR59","doi-asserted-by":"crossref","DOI":"10.1093\/oso\/9780198520597.001.0001","volume-title":"Polymer physics","author":"M Rubinstein","year":"2003","unstructured":"Rubinstein, M., Colby, R. H., et al. (2003). Polymer physics (Vol. 23). New York: Oxford University Press."},{"key":"9605_CR60","doi-asserted-by":"publisher","first-page":"308","DOI":"10.1016\/j.cell.2013.08.058","volume":"155","author":"Y Salzberg","year":"2013","unstructured":"Salzberg, Y., D\u00edaz-Balzac, C. A., Ramirez-Suarez, N. J., Attreed, M., Tecle, E., Desbois, M., Kaprielian, Z., & B\u00fclow, H. E. (2013). Skin-derived cues control arborization of sensory dendrites in Caenorhabditis elegans. Cell, 155, 308\u2013320.","journal-title":"Cell"},{"key":"9605_CR61","doi-asserted-by":"publisher","first-page":"20170382","DOI":"10.1098\/rstb.2017.0382","volume":"373","author":"GP Sarma","year":"2018","unstructured":"Sarma, G. P., Lee, C. W., Portegys, T., Ghayoomie, V., Jacobs, T., Alicea, B., Cantarelli, M., Currie, M., Gerkin, R. C., Gingell, S., et al. (2018). OpenWorm: overview and recent advances in integrative biological simulation of Caenorhabditis elegans. Philosophical Transactions of the Royal Society B, 373, 20170382.","journal-title":"Philosophical Transactions of the Royal Society B"},{"key":"9605_CR62","doi-asserted-by":"publisher","DOI":"10.7554\/eLife.57443","volume":"9","author":"LK Scheffer","year":"2020","unstructured":"Scheffer, L. K., Xu, C. S., Januszewski, M., Lu, Z., Takemura, S. -Y., Hayworth, K. J., Huang, G. B., Shinomiya, K., Maitlin-Shepard, J., Berg, S., et al. (2020). A connectome and analysis of the adult Drosophila central brain. eLife, 9,","journal-title":"eLife"},{"key":"9605_CR63","doi-asserted-by":"publisher","first-page":"29","DOI":"10.1016\/j.jinsphys.2016.11.007","volume":"98","author":"JN Schultzhaus","year":"2017","unstructured":"Schultzhaus, J. N., Saleem, S., Iftikhar, H., & Carney, G. E. (2017). The role of the Drosophila lateral horn in olfactory information processing and behavioral response. Journal of Insect Physiology, 98, 29\u201337.","journal-title":"Journal of Insect Physiology"},{"key":"9605_CR64","doi-asserted-by":"publisher","first-page":"866","DOI":"10.1038\/nprot.2008.51","volume":"3","author":"R Scorcioni","year":"2008","unstructured":"Scorcioni, R., Polavaram, S., & Ascoli, G. A. (2008). L-measure: a web-accessible tool for the analysis, comparison and search of digital reconstructions of neuronal morphologies. Nature Protocols, 3, 866\u2013876.","journal-title":"Nature Protocols"},{"key":"9605_CR65","doi-asserted-by":"publisher","first-page":"1007","DOI":"10.1152\/jn.00249.2010","volume":"104","author":"Y Seki","year":"2010","unstructured":"Seki, Y., Rybak, J., Wicher, D., Sachse, S., & Hansson, B. S. (2010). Physiological and morphological characterization of local interneurons in the Drosophila antennal lobe. Journal of Neurophysiology, 104, 1007\u20131019.","journal-title":"Journal of Neurophysiology"},{"key":"9605_CR66","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1038\/s41598-020-79139-8","volume":"11","author":"JH Smith","year":"2021","unstructured":"Smith, J. H., Rowland, C., Harland, B., Moslehi, S., Montgomery, R., Schobert, K., Watterson, W., Dalrymple-Alford, J., & Taylor, R. (2021). How neurons exploit fractal geometry to optimize their network connectivity. Scientific Reports, 11, 1\u201313.","journal-title":"Scientific Reports"},{"key":"9605_CR67","doi-asserted-by":"publisher","first-page":"123","DOI":"10.1016\/S0165-0270(96)00080-5","volume":"69","author":"T Smith Jr","year":"1996","unstructured":"Smith, T., Jr, Lange, G., & Marks, W. B. (1996). Fractal methods and results in cellular morphology-dimensions, lacunarity and multifractals. Journal of Neuroscience Methods, 69, 123\u2013136.","journal-title":"Journal of Neuroscience Methods"},{"key":"9605_CR68","doi-asserted-by":"publisher","DOI":"10.1201\/9781315274386","volume-title":"Introduction to percolation theory","author":"D Stauffer","year":"2018","unstructured":"Stauffer, D., & Aharony, A. (2018). Introduction to percolation theory. Taylor & Francis."},{"key":"9605_CR69","first-page":"583","volume":"3","author":"A Strehl","year":"2002","unstructured":"Strehl, A., & Ghosh, J. (2002). Cluster ensembles-a knowledge reuse framework for combining multiple partitions. Journal of Machine Learning Research, 3, 583\u2013617.","journal-title":"Journal of Machine Learning Research"},{"key":"9605_CR70","doi-asserted-by":"publisher","first-page":"178","DOI":"10.1002\/neu.10245","volume":"56","author":"EL Tsalik","year":"2003","unstructured":"Tsalik, E. L., & Hobert, O. (2003). Functional mapping of neurons that control locomotory behavior in Caenorhabditis elegans. Journal of Neurobiology, 56, 178\u2013197.","journal-title":"Journal of Neurobiology"},{"key":"9605_CR71","doi-asserted-by":"publisher","first-page":"415","DOI":"10.1002\/cne.10628","volume":"461","author":"A Tsiola","year":"2003","unstructured":"Tsiola, A., Hamzei-Sichani, F., Peterlin, Z., & Yuste, R. (2003). Quantitative morphologic classification of layer 5 neurons from mouse primary visual cortex. The Journal of Comparative Neurology, 461, 415\u2013428.","journal-title":"The Journal of Comparative Neurology"},{"key":"9605_CR72","doi-asserted-by":"crossref","unstructured":"Uylings, H. B., & VanPelt, J. (2002). Measures for quantifying dendritic arborizations. Network: Computation in Neural Systems, 13, 397.","DOI":"10.1088\/0954-898X_13_3_309"},{"key":"9605_CR73","doi-asserted-by":"publisher","first-page":"e1000781","DOI":"10.1371\/journal.pcbi.1000781","volume":"6","author":"RA van Elburg","year":"2010","unstructured":"van Elburg, R. A., & van Ooyen, A. (2010). Impact of dendritic size and dendritic topology on burst firing in pyramidal cells. PLoS Computational Biology, 6, e1000781.","journal-title":"PLoS Computational Biology"},{"key":"9605_CR74","doi-asserted-by":"crossref","unstructured":"Van Ooyen, A., Duijnhouwer, J., Remme, M. W., & van Pelt, J. (2002). The effect of dendritic topology on firing patterns in model neurons. Network: Computation in neural systems, 13, 311.","DOI":"10.1088\/0954-898X_13_3_304"},{"key":"9605_CR75","doi-asserted-by":"publisher","first-page":"e1001066","DOI":"10.1371\/journal.pcbi.1001066","volume":"7","author":"LR Varshney","year":"2011","unstructured":"Varshney, L. R., Chen, B. L., Paniagua, E., Hall, D. H., & Chklovskii, D. B. (2011). Structural properties of the Caenorhabditis elegans neuronal network. PLoS Computational Biology, 7, e1001066.","journal-title":"PLoS Computational Biology"},{"key":"9605_CR76","doi-asserted-by":"publisher","first-page":"174","DOI":"10.3389\/fnbeh.2014.00174","volume":"8","author":"D Vasmer","year":"2014","unstructured":"Vasmer, D., Pooryasin, A., Riemensperger, T., & Fiala, A. (2014). Induction of aversive learning through thermogenetic activation of Kenyon cell ensembles in Drosophila. Frontiers in Behavioral Neuroscience, 8, 174.","journal-title":"Frontiers in Behavioral Neuroscience"},{"key":"9605_CR77","doi-asserted-by":"publisher","first-page":"102","DOI":"10.3389\/fnana.2016.00102","volume":"10","author":"X Vasques","year":"2016","unstructured":"Vasques, X., Vanel, L., Villette, G., & Cif, L. (2016). Morphological neuron classification using machine learning. Frontiers in Neuroanatomy, 10, 102.","journal-title":"Frontiers in Neuroanatomy"},{"key":"9605_CR78","doi-asserted-by":"publisher","first-page":"103","DOI":"10.1016\/j.neures.2004.06.005","volume":"50","author":"T Wakabayashi","year":"2004","unstructured":"Wakabayashi, T., Kitagawa, I., & Shingai, R. (2004). Neurons regulating the duration of forward locomotion in caenorhabditis elegans. Neuroscience Research, 50, 103\u2013111.","journal-title":"Neuroscience Research"},{"key":"9605_CR79","doi-asserted-by":"publisher","first-page":"4386","DOI":"10.1523\/JNEUROSCI.6063-11.2012","volume":"32","author":"Q Wang","year":"2012","unstructured":"Wang, Q., Sporns, O., & Burkhalter, A. (2012). Network analysis of corticocortical connections reveals ventral and dorsal processing streams in mouse visual cortex. The Journal of Neuroscience, 32, 4386\u20134399.","journal-title":"The Journal of Neuroscience"},{"key":"9605_CR80","doi-asserted-by":"publisher","first-page":"1823","DOI":"10.1101\/gad.3.12a.1823","volume":"3","author":"JC Way","year":"1989","unstructured":"Way, J. C., & Chalfie, M. (1989). The mec-3 gene of Caenorhabditis elegans requires its own product for maintained expression and is expressed in three neuronal cell types. Genes & Development, 3, 1823\u20131833.","journal-title":"Genes & Development"},{"key":"9605_CR81","doi-asserted-by":"publisher","first-page":"12536","DOI":"10.1073\/pnas.0901530106","volume":"106","author":"Q Wen","year":"2009","unstructured":"Wen, Q., Stepanyants, A., Elston, G. N., Grosberg, A. Y., & Chklovskii, D. B. (2009). Maximization of the connectivity repertoire as a statistical principle governing the shapes of dendritic arbors. Proceedings of the National Academy of Sciences, 106, 12536\u201312541.","journal-title":"Proceedings of the National Academy of Sciences"},{"key":"9605_CR82","doi-asserted-by":"publisher","first-page":"277","DOI":"10.1016\/0166-2236(85)90102-X","volume":"8","author":"J White","year":"1985","unstructured":"White, J. (1985). Neuronal connectivity in Caenorhabditis elegans. Trends in Neurosciences, 8, 277\u2013283.","journal-title":"Trends in Neurosciences"},{"key":"9605_CR83","first-page":"1","volume":"314","author":"JG White","year":"1986","unstructured":"White, J. G., Southgate, E., Thomson, J. N., Brenner, S., et al. (1986). The structure of the nervous system of the nematode Caenorhabditis elegans. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences, 314, 1\u2013340.","journal-title":"Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences"},{"key":"9605_CR84","doi-asserted-by":"publisher","first-page":"1344","DOI":"10.1103\/PhysRevLett.60.1344","volume":"60","author":"P-Z Wong","year":"1988","unstructured":"Wong, P.-Z., & Bray, A. J. (1988). Porod scattering from fractal surfaces. Physical Review Letters, 60, 1344.","journal-title":"Physical Review Letters"},{"key":"9605_CR85","doi-asserted-by":"crossref","unstructured":"Woo, J., Choi, K., Kim, S. H., Han, K., & Choi, M. (2022). The structural aspects of neural dynamics and information flow. Frontiers in Bioscience-Landmark, 27.","DOI":"10.31083\/j.fbl2701015"},{"key":"9605_CR86","unstructured":"y Cajal, S. R. (1911). Histologie du syst\u00e8me nerveux de l\u2019homme & des vert\u00e9br\u00e9s: Cervelet, cerveau moyen, r\u00e9tine, couche optique, corps stri\u00e9, \u00e9corce c\u00e9r\u00e9brale g\u00e9n\u00e9rale & r\u00e9gionale, grand sympathique\u00a0(Vol. 2). A. Maloine."},{"key":"9605_CR87","doi-asserted-by":"publisher","first-page":"530","DOI":"10.1038\/nrn.2017.85","volume":"18","author":"H Zeng","year":"2017","unstructured":"Zeng, H., & Sanes, J. R. (2017). Neuronal cell-type classification: challenges, opportunities and the path forward. Nature Reviews Neuroscience, 18, 530\u2013546.","journal-title":"Nature Reviews Neuroscience"},{"key":"9605_CR88","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1038\/s41598-020-79139-8","volume":"11","author":"T Zhang","year":"2021","unstructured":"Zhang, T., Zeng, Y., Zhang, Y., Zhang, X., Shi, M., Tang, L., Zhang, D., & Xu, B. (2021). Neuron type classification in rat brain based on integrative convolutional and tree-based recurrent neural networks. Scientific Reports, 11, 1\u201314.","journal-title":"Scientific Reports"},{"key":"9605_CR89","doi-asserted-by":"publisher","first-page":"730","DOI":"10.1016\/j.cell.2018.06.019","volume":"174","author":"Z Zheng","year":"2018","unstructured":"Zheng, Z., Lauritzen, J. S., Perlman, E., Robinson, C. G., Nichols, M., Milkie, D., Torrens, O., Price, J., Fisher, C. B., Sharifi, N., et al. (2018). A complete electron microscopy volume of the brain of adult Drosophila melanogaster. Cell, 174, 730\u2013743.","journal-title":"Cell"},{"key":"9605_CR90","doi-asserted-by":"publisher","first-page":"1301","DOI":"10.1063\/1.1747157","volume":"17","author":"BH Zimm","year":"1949","unstructured":"Zimm, B. H., & Stockmayer, W. H. (1949). The dimensions of chain molecules containing branches and rings. The Journal of Chemical Physics, 17, 1301\u20131314.","journal-title":"The Journal of Chemical Physics"}],"container-title":["Neuroinformatics"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/link.springer.com\/content\/pdf\/10.1007\/s12021-022-09605-3.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/link.springer.com\/article\/10.1007\/s12021-022-09605-3\/fulltext.html","content-type":"text\/html","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/link.springer.com\/content\/pdf\/10.1007\/s12021-022-09605-3.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2023,11,28]],"date-time":"2023-11-28T04:37:26Z","timestamp":1701146246000},"score":1,"resource":{"primary":{"URL":"https:\/\/link.springer.com\/10.1007\/s12021-022-09605-3"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2022,10,3]]},"references-count":90,"journal-issue":{"issue":"1","published-print":{"date-parts":[[2023,1]]}},"alternative-id":["9605"],"URL":"https:\/\/doi.org\/10.1007\/s12021-022-09605-3","relation":{"has-preprint":[{"id-type":"doi","id":"10.1101\/2022.04.07.487455","asserted-by":"object"}]},"ISSN":["1539-2791","1559-0089"],"issn-type":[{"value":"1539-2791","type":"print"},{"value":"1559-0089","type":"electronic"}],"subject":[],"published":{"date-parts":[[2022,10,3]]},"assertion":[{"value":"12 September 2022","order":1,"name":"accepted","label":"Accepted","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"3 October 2022","order":2,"name":"first_online","label":"First Online","group":{"name":"ArticleHistory","label":"Article History"}},{"order":1,"name":"Ethics","group":{"name":"EthicsHeading","label":"Declarations"}},{"value":"Not applicable.","order":2,"name":"Ethics","group":{"name":"EthicsHeading","label":"Ethics Approval"}},{"value":"Not applicable.","order":3,"name":"Ethics","group":{"name":"EthicsHeading","label":"Consent to Participate"}},{"value":"The authors declare no competing interests.","order":4,"name":"Ethics","group":{"name":"EthicsHeading","label":"Competing Interests"}}]}}