{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,10,21]],"date-time":"2025-10-21T15:51:39Z","timestamp":1761061899837,"version":"3.37.3"},"reference-count":79,"publisher":"Springer Science and Business Media LLC","issue":"1","license":[{"start":{"date-parts":[[2023,11,4]],"date-time":"2023-11-04T00:00:00Z","timestamp":1699056000000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.springernature.com\/gp\/researchers\/text-and-data-mining"},{"start":{"date-parts":[[2023,11,4]],"date-time":"2023-11-04T00:00:00Z","timestamp":1699056000000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/www.springernature.com\/gp\/researchers\/text-and-data-mining"}],"funder":[{"DOI":"10.13039\/100000025","name":"National Institute of Mental Health","doi-asserted-by":"publisher","award":["MH059299","MH059299"],"award-info":[{"award-number":["MH059299","MH059299"]}],"id":[{"id":"10.13039\/100000025","id-type":"DOI","asserted-by":"publisher"}]},{"name":"Children's Foundation of Michigan"},{"name":"Lykacki-Young Fund from the State of Michigan"},{"name":"Paul and Anita Strauss Endowment"},{"name":"Donald and Mary Kosch Foundation"},{"name":"Elliott Luby Endowed Professorship"},{"name":"Detroit Wayne County Authority"},{"name":"Miriam Hamburger Endowed Chair of Psychiatry"},{"DOI":"10.13039\/100000893","name":"Simons Foundation","doi-asserted-by":"publisher","award":["594594"],"award-info":[{"award-number":["594594"]}],"id":[{"id":"10.13039\/100000893","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/100006754","name":"Army Research Laboratory","doi-asserted-by":"publisher","award":["W911NF-18-1-0307"],"award-info":[{"award-number":["W911NF-18-1-0307"]}],"id":[{"id":"10.13039\/100006754","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/100000001","name":"National Science Foundation","doi-asserted-by":"publisher","award":["DMS-1764406"],"award-info":[{"award-number":["DMS-1764406"]}],"id":[{"id":"10.13039\/100000001","id-type":"DOI","asserted-by":"publisher"}]},{"name":"Cohen Neuroscience Endowment"},{"name":"Prechter World Bipolar Foundation"}],"content-domain":{"domain":["link.springer.com"],"crossmark-restriction":false},"short-container-title":["Neuroinform"],"DOI":"10.1007\/s12021-023-09645-3","type":"journal-article","created":{"date-parts":[[2023,11,4]],"date-time":"2023-11-04T12:02:22Z","timestamp":1699099342000},"page":"45-62","update-policy":"https:\/\/doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":3,"title":["Topological Data Analysis Captures Task-Driven fMRI Profiles in Individual Participants: A Classification Pipeline Based on Persistence"],"prefix":"10.1007","volume":"22","author":[{"given":"Michael J.","family":"Catanzaro","sequence":"first","affiliation":[]},{"given":"Sam","family":"Rizzo","sequence":"additional","affiliation":[]},{"given":"John","family":"Kopchick","sequence":"additional","affiliation":[]},{"given":"Asadur","family":"Chowdury","sequence":"additional","affiliation":[]},{"given":"David R.","family":"Rosenberg","sequence":"additional","affiliation":[]},{"given":"Peter","family":"Bubenik","sequence":"additional","affiliation":[]},{"given":"Vaibhav A.","family":"Diwadkar","sequence":"additional","affiliation":[]}],"member":"297","published-online":{"date-parts":[[2023,11,4]]},"reference":[{"issue":"1","key":"9645_CR1","doi-asserted-by":"publisher","first-page":"1","DOI":"10.3934\/fods.2022014","volume":"5","author":"H Abdallah","year":"2023","unstructured":"Abdallah, H., Regalski, A., Kang, M. B., Berishaj, M., Nnadi, N., Chowdury, A., Diwadkar, V. A., & Salch, A. (2023). Statistical inference for persistent homology applied to simulated fMRI time series data. Foundations of Data Science, 5(1), 1\u201325. https:\/\/doi.org\/10.3934\/fods.2022014","journal-title":"Foundations of Data Science"},{"issue":"3","key":"9645_CR2","doi-asserted-by":"publisher","first-page":"220","DOI":"10.1016\/j.bandc.2005.11.009","volume":"60","author":"E Amaro Jr","year":"2006","unstructured":"Amaro, E., Jr., & Barker, G. J. (2006). Study design in fMRI: Basic principles. Brain and Cognition, 60(3), 220\u2013232.","journal-title":"Brain and Cognition"},{"key":"9645_CR3","doi-asserted-by":"publisher","first-page":"67","DOI":"10.1007\/978-3-030-00755-3_8","volume-title":"Connectomics in neuroImaging","author":"KL Anderson","year":"2018","unstructured":"Anderson, K. L., Anderson, J. S., Palande, S., & Wang, B. (2018). Topological data analysis of functional MRI connectivity in time and space domains. In G. Wu, I. Rekik, M. D. Schirmer, A. W. Chung, & B. Munsell (Eds.), Connectomics in neuroImaging (Vol. 11083, pp. 67\u201377). Springer International Publishing. https:\/\/doi.org\/10.1007\/978-3-030-00755-3_8"},{"key":"9645_CR4","doi-asserted-by":"crossref","unstructured":"Asemi, A., Ramaseshan, K., Burgess, A., Diwadkar, V. A., & Bressler, S. L. (2015). Dorsal anterior cingulate cortex modulates supplementary motor area in coordinated unimanual motor behavior. Frontiers in Human Neuroscience, 9(309).","DOI":"10.3389\/fnhum.2015.00309"},{"key":"9645_CR5","doi-asserted-by":"publisher","DOI":"10.1176\/appi.books.9780890425596","volume-title":"Diagnostic and statistical manual of mental disorders","author":"American Psychiatric Association","year":"2013","unstructured":"American Psychiatric Association. (2013). Diagnostic and statistical manual of mental disorders (5th ed.). American Psychiatric Press.","edition":"5"},{"issue":"3","key":"9645_CR6","doi-asserted-by":"publisher","first-page":"585","DOI":"10.1007\/BF00237481","volume":"63","author":"R Benecke","year":"1986","unstructured":"Benecke, R., Rothwell, J. C., Day, B. L., Dick, J. P., & Marsden, C. D. (1986). Motor strategies involved in the performance of sequential movements. Experimental Brain Research Experimentelle Hirnforschung, 63(3), 585\u2013595.","journal-title":"Experimental Brain Research Experimentelle Hirnforschung"},{"key":"9645_CR7","doi-asserted-by":"publisher","first-page":"105565","DOI":"10.1016\/j.bandc.2020.105565","volume":"141","author":"M Berchicci","year":"2020","unstructured":"Berchicci, M., Sulpizio, V., Mento, G., Lucci, G., Civale, N., Galati, G., Pitzalis, S., Spinelli, D., & Russo, F. (2020). Prompting future events: Effects of temporal cueing and time on task on brain preparation to action. Brain and Cognition, 141, 105565.","journal-title":"Brain and Cognition"},{"issue":"7906","key":"9645_CR8","doi-asserted-by":"publisher","first-page":"525","DOI":"10.1038\/s41586-022-04554-y","volume":"604","author":"RAI Bethlehem","year":"2022","unstructured":"Bethlehem, R. A. I., Seidlitz, J., White, S. R., Vogel, J. W., Anderson, K. M., Adamson, C., & Alexander-Bloch, A. F. (2022). Brain charts for the human lifespan. Nature, 604(7906), 525\u2013533. https:\/\/doi.org\/10.1038\/s41586-022-04554-y","journal-title":"Nature"},{"issue":"8","key":"9645_CR9","doi-asserted-by":"publisher","first-page":"00777","DOI":"10.1002\/brb3.777","volume":"7","author":"NZ Bielczyk","year":"2017","unstructured":"Bielczyk, N. Z., Llera, A., Buitelaar, J. K., Glennon, J. C., & Beckmann, C. F. (2017). The impact of hemodynamic variability and signal mixing on the identifiability of effective connectivity structures in BOLD fMRI. Brain and Behavior: A Cognitive Neuroscience Perspective, 7(8), 00777. https:\/\/doi.org\/10.1002\/brb3.777","journal-title":"Brain and Behavior: A Cognitive Neuroscience Perspective"},{"issue":"2","key":"9645_CR10","doi-asserted-by":"publisher","first-page":"549","DOI":"10.1162\/netn_a_00190","volume":"5","author":"J Billings","year":"2021","unstructured":"Billings, J., Saggar, M., Hlinka, J., Keilholz, S., & Petri, G. (2021). Simplicial and topological descriptions of human brain dynamics. Network Neuroscience, 5(2), 549\u2013568. https:\/\/doi.org\/10.1162\/netn_a_00190","journal-title":"Network Neuroscience"},{"key":"9645_CR11","doi-asserted-by":"crossref","unstructured":"Boser, B. E., Guyon, I. M., & Vapnik, V. N. (1992). A training algorithm for optimal margin classifiers. Proceedings of the Fifth Annual Workshop on Computational Learning Theory, 144\u2013152.","DOI":"10.1145\/130385.130401"},{"issue":"6758","key":"9645_CR12","doi-asserted-by":"publisher","first-page":"179","DOI":"10.1038\/46035","volume":"402","author":"M Botvinick","year":"1999","unstructured":"Botvinick, M., Nystrom, L. E., Fissell, K., Carter, C. S., & Cohen, J. D. (1999). Conflict monitoring versus selection-for-action in anterior cingulate cortex. Nature, 402(6758), 179\u2013181. https:\/\/doi.org\/10.1038\/46035","journal-title":"Nature"},{"key":"9645_CR13","doi-asserted-by":"publisher","DOI":"10.1038\/s41380-023-02077-0","author":"WB Bruin","year":"2023","unstructured":"Bruin, W. B., Abe, Y., Alonso, P., Anticevic, A., Backhausen, L. L., Balachander, S., & Wingen, G. A. (2023). The functional connectome in obsessive-compulsive disorder: Resting-state mega-analysis and machine learning classification for the ENIGMA-OCD consortium. Molecular Psychiatry. https:\/\/doi.org\/10.1038\/s41380-023-02077-0","journal-title":"Molecular Psychiatry"},{"issue":"1","key":"9645_CR14","first-page":"77","volume":"16","author":"P Bubenik","year":"2015","unstructured":"Bubenik, P. (2015). Statistical topological data analysis using persistence landscapes. The Journal of Machine Learning Research, 16(1), 77\u2013102.","journal-title":"The Journal of Machine Learning Research"},{"key":"9645_CR15","doi-asserted-by":"publisher","first-page":"97","DOI":"10.1007\/978-3-030-43408-3_4","volume-title":"Topological data analysis","author":"P Bubenik","year":"2020","unstructured":"Bubenik, P. (2020). The persistence landscape and some of its properties. In N. A. Baas, G. E. Carlsson, G. Quick, M. Szymik, & M. Thaule (Eds.), Topological data analysis (pp. 97\u2013117). Springer International Publishing. https:\/\/doi.org\/10.1007\/978-3-030-43408-3_4"},{"issue":"5","key":"9645_CR16","doi-asserted-by":"publisher","first-page":"1080","DOI":"10.1006\/nimg.2001.0921","volume":"14","author":"VD Calhoun","year":"2001","unstructured":"Calhoun, V. D. (2001). fMRI activation in a visual-perception task: Network of areas detected using the general linear model and independent components analysis. NeuroImage, 14(5), 1080\u20131088.","journal-title":"NeuroImage"},{"issue":"2","key":"9645_CR17","doi-asserted-by":"publisher","first-page":"255","DOI":"10.1090\/S0273-0979-09-01249-X","volume":"46","author":"G Carlsson","year":"2009","unstructured":"Carlsson, G. (2009). Topology and data. Bulletin of the American Mathematical Society, 46(2), 255\u2013308. https:\/\/doi.org\/10.1090\/S0273-0979-09-01249-X","journal-title":"Bulletin of the American Mathematical Society"},{"key":"9645_CR18","doi-asserted-by":"publisher","DOI":"10.1007\/s00429-021-02435-0","author":"EGZ Centeno","year":"2022","unstructured":"Centeno, E. G. Z., Moreni, G., Vriend, C., Douw, L., & Santos, F. A. N. (2022). A hands-on tutorial on network and topological neuroscience. Brain Structure & Function. https:\/\/doi.org\/10.1007\/s00429-021-02435-0","journal-title":"Brain Structure & Function"},{"key":"9645_CR19","unstructured":"Chazal, F., & Michel, B. (2017). An introduction to Topological Data Analysis: Fundamental and practical aspects for data scientists. ArXiv:1710.04019 [Cs, Math, Stat]. http:\/\/arxiv.org\/abs\/1710.04019"},{"issue":"1","key":"9645_CR20","doi-asserted-by":"publisher","first-page":"103","DOI":"10.1007\/s00454-006-1276-5","volume":"37","author":"D Cohen-Steiner","year":"2007","unstructured":"Cohen-Steiner, D., Edelsbrunner, H., & Harer, J. (2007). Stability of persistence diagrams. Discrete & Computational Geometry, 37(1), 103\u2013120. https:\/\/doi.org\/10.1007\/s00454-006-1276-5","journal-title":"Discrete & Computational Geometry"},{"key":"9645_CR21","doi-asserted-by":"publisher","first-page":"55","DOI":"10.1016\/j.neuropsychologia.2018.05.013","volume":"117","author":"DC Comstock","year":"2018","unstructured":"Comstock, D. C., & Balasubramaniam, R. (2018). Neural responses to perturbations in visual and auditory metronomes during sensorimotor synchronization. Neuropsychologia, 117, 55\u201366.","journal-title":"Neuropsychologia"},{"key":"9645_CR22","doi-asserted-by":"publisher","first-page":"72","DOI":"10.1111\/j.1749-6632.2011.05990.x","volume":"1225","author":"AD Craig","year":"2011","unstructured":"Craig, A. D. (2011). Significance of the insula for the evolution of human awareness of feelings from the body. Annals of the New York Academy of Sciences, 1225, 72\u201382. https:\/\/doi.org\/10.1111\/j.1749-6632.2011.05990.x","journal-title":"Annals of the New York Academy of Sciences"},{"key":"9645_CR23","doi-asserted-by":"crossref","unstructured":"Diwadkar, V. A., Asemi, A., Burgess, A., Chowdury, A., & Bressler, S. L. (2017). Potentiation of motor sub-networks for motor control but not working memory: Interaction of dACC and SMA revealed by resting-state directed functional connectivity. PLoS ONE, 12(3).","DOI":"10.1371\/journal.pone.0172531"},{"key":"9645_CR24","doi-asserted-by":"publisher","first-page":"257","DOI":"10.1090\/conm\/453\/08802","volume-title":"Contemporary mathematics","author":"H Edelsbrunner","year":"2008","unstructured":"Edelsbrunner, H., & Harer, J. (2008). Persistent homology\u2014A survey. In J. E. Goodman, J. Pach, & R. Pollack (Eds.), Contemporary mathematics (Vol. 453, pp. 257\u2013282). American Mathematical Society. https:\/\/doi.org\/10.1090\/conm\/453\/08802"},{"key":"9645_CR25","doi-asserted-by":"publisher","first-page":"31","DOI":"10.4171\/120-1\/3","volume-title":"European Congress of Mathematics Krak\u00f3w, 2\u20137 July, 2012","author":"H Edelsbrunner","year":"2013","unstructured":"Edelsbrunner, H., & Morozov, D. (2013). Persistent homology: Theory and practice. In R. Lata\u0142a, A. Ruci\u0144ski, P. Strzelecki, J. \u015awi\u0105tkowski, D. Wrzosek, & P. Zakrzewski (Eds.), European Congress of Mathematics Krak\u00f3w, 2\u20137 July, 2012 (pp. 31\u201350). European Mathematical Society Publishing House. https:\/\/doi.org\/10.4171\/120-1\/3"},{"issue":"28","key":"9645_CR26","doi-asserted-by":"publisher","first-page":"7900","DOI":"10.1073\/pnas.1602413113","volume":"113","author":"A Eklund","year":"2016","unstructured":"Eklund, A., Nichols, T. E., & Knutsson, H. (2016). Cluster failure: Why fMRI inferences for spatial extent have inflated false-positive rates. Proceedings of the National Academy of Sciences U S A, 113(28), 7900\u20137905. https:\/\/doi.org\/10.1073\/pnas.1602413113","journal-title":"Proceedings of the National Academy of Sciences U S A"},{"key":"9645_CR27","doi-asserted-by":"publisher","unstructured":"Ellis, C. T., Lesnick, M., Henselman-Petrusek, G., Keller, B., & Cohen, J. D. (2019). Feasibility of topological data analysis for event-related fMRI. Network Neuroscience, 1\u201312. https:\/\/doi.org\/10.1162\/netn_a_00095","DOI":"10.1162\/netn_a_00095"},{"key":"9645_CR28","unstructured":"Essen, D. C., Ugurbil, K., Auerbach, E., Barch, D., Behrens, T. E., Bucholz, R., & Yacoub, E. (2012). The Human Connectome Project: A data acquisition perspective."},{"key":"9645_CR29","doi-asserted-by":"publisher","first-page":"118254","DOI":"10.1016\/j.neuroimage.2021.118254","volume":"239","author":"ES Finn","year":"2021","unstructured":"Finn, E. S., & Rosenberg, M. D. (2021). Beyond fingerprinting: Choosing predictive connectomes over reliable connectomes. NeuroImage, 239, 118254. https:\/\/doi.org\/10.1016\/j.neuroimage.2021.118254","journal-title":"NeuroImage"},{"key":"9645_CR30","doi-asserted-by":"publisher","first-page":"104881","DOI":"10.1016\/j.bandl.2020.104881","volume":"212","author":"SA Frankford","year":"2021","unstructured":"Frankford, S. A., Nieto-Casta\u00f1\u00f3n, A., Tourville, J. A., & Guenther, F. H. (2021). Reliability of single-subject neural activation patterns in speech production tasks. Brain and Language, 212, 104881.","journal-title":"Brain and Language"},{"issue":"2","key":"9645_CR31","doi-asserted-by":"publisher","first-page":"166","DOI":"10.1006\/nimg.1995.1019","volume":"2","author":"KJ Friston","year":"1995","unstructured":"Friston, K. J. (1995a). Characterizing dynamic brain responses with fMRI: A multivariate approach. NeuroImage, 2(2), 166\u2013172.","journal-title":"NeuroImage"},{"key":"9645_CR32","volume-title":"Statistical parametric maps in functional imaging: A general approach","author":"KJ Friston","year":"1995","unstructured":"Friston, K. J. (1995b). Statistical parametric maps in functional imaging: A general approach (Vol. 2). Human Brain Mapping."},{"key":"9645_CR33","doi-asserted-by":"publisher","first-page":"57","DOI":"10.1146\/annurev.psych.56.091103.070311","volume":"56","author":"KJ Friston","year":"2005","unstructured":"Friston, K. J. (2005). Models of brain function in neuroimaging. Annual Review of Psychology, 56, 57\u201387. https:\/\/doi.org\/10.1146\/annurev.psych.56.091103.070311","journal-title":"Annual Review of Psychology"},{"issue":"3","key":"9645_CR34","doi-asserted-by":"publisher","first-page":"1202","DOI":"10.1016\/j.neuroimage.2010.12.039","volume":"56","author":"KJ Friston","year":"2012","unstructured":"Friston, K. J. (2012). Network discovery with DCM. NeuroImage, 56(3), 1202\u20131221.","journal-title":"NeuroImage"},{"issue":"3","key":"9645_CR35","doi-asserted-by":"publisher","first-page":"1202","DOI":"10.1016\/j.neuroimage.2010.12.039","volume":"56","author":"KJ Friston","year":"2012","unstructured":"Friston, K. J., Li, B., Daunizeau, J., & Stephan, K. E. (2012). Network discovery with DCM. NeuroImage, 56(3), 1202\u20131221. https:\/\/doi.org\/10.1016\/j.neuroimage.2010.12.039","journal-title":"NeuroImage"},{"issue":"1","key":"9645_CR36","doi-asserted-by":"publisher","first-page":"61","DOI":"10.1090\/S0273-0979-07-01191-3","volume":"45","author":"R Ghrist","year":"2008","unstructured":"Ghrist, R. (2008). Barcodes: The persistent topology of data. Bulletin of the American Mathematical Society, 45(1), 61\u201375. https:\/\/doi.org\/10.1090\/S0273-0979-07-01191-3","journal-title":"Bulletin of the American Mathematical Society"},{"key":"9645_CR37","doi-asserted-by":"crossref","unstructured":"Goebel, R., Esposito, F., & Formisano, E. (2006). Analysis of functional image analysis contest (FIAC) data with brainvoyager QX: From single-subject to cortically aligned group general linear model analysis and self-organizing group independent component analysis. Human Brain Mapping, 27(5).","DOI":"10.1002\/hbm.20249"},{"key":"9645_CR38","doi-asserted-by":"publisher","first-page":"85","DOI":"10.1016\/j.neuroscience.2018.01.061","volume":"389","author":"CC Gonzalez","year":"2018","unstructured":"Gonzalez, C. C., & Burke, M. R. (2018). Motor sequence learning in the brain: The long and short of it. Neuroscience, 389, 85\u201398.","journal-title":"Neuroscience"},{"key":"9645_CR39","doi-asserted-by":"publisher","unstructured":"Hensel, F., Moor, M., & Rieck, B. (2021). A Survey of Topological Machine Learning Methods. Frontiers in Artificial Intelligence, 4. https:\/\/doi.org\/10.3389\/frai.2021.681108","DOI":"10.3389\/frai.2021.681108"},{"issue":"6","key":"9645_CR40","doi-asserted-by":"publisher","first-page":"2741","DOI":"10.1002\/hbm.22363","volume":"35","author":"F Hoffstaedter","year":"2014","unstructured":"Hoffstaedter, F., Grefkes, C., Caspers, S., Roski, C., Palomero-Gallagher, N., Laird, A. R., & Eickhoff, S. B. (2014). The role of anterior midcingulate cortex in cognitive motor control: Evidence from functional connectivity analyses. Human Brain Mapping, 35(6), 2741\u20132753. https:\/\/doi.org\/10.1002\/hbm.22363","journal-title":"Human Brain Mapping"},{"key":"9645_CR41","doi-asserted-by":"publisher","DOI":"10.1007\/978-1-4614-7138-7","volume-title":"An introduction to statistical learning","author":"G James","year":"2013","unstructured":"James, G., Witten, D., Hastie, T., & Tibshirani, R. (2013). An introduction to statistical learning (Vol. 112). Springer."},{"key":"9645_CR42","doi-asserted-by":"publisher","DOI":"10.1093\/cercor\/bhac045","volume-title":"Variational dimensions of cingulate cortex functional connectivity and implications in neuropsychiatric disorders","author":"YS Lam","year":"2022","unstructured":"Lam, Y. S., Li, J., Ke, Y., & Yung, W. H. (2022). Variational dimensions of cingulate cortex functional connectivity and implications in neuropsychiatric disorders. Cereb Cortex."},{"key":"9645_CR43","doi-asserted-by":"publisher","first-page":"194","DOI":"10.1016\/j.neuroimage.2017.01.041","volume":"164","author":"FH Lin","year":"2018","unstructured":"Lin, F. H., Polimeni, J. R., Lin, J. L., Tsai, K. W., Chu, Y. H., Wu, P. Y., & Kuo, W. J. (2018). Relative latency and temporal variability of hemodynamic responses at the human primary visual cortex. NeuroImage, 164, 194\u2013201. https:\/\/doi.org\/10.1016\/j.neuroimage.2017.01.041","journal-title":"NeuroImage"},{"issue":"7197","key":"9645_CR44","doi-asserted-by":"publisher","first-page":"869","DOI":"10.1038\/nature06976","volume":"453","author":"NK Logothetis","year":"2008","unstructured":"Logothetis, N. K. (2008). What we can do and what we cannot do with fMRI. Nature, 453(7197), 869\u2013878. https:\/\/doi.org\/10.1038\/nature06976","journal-title":"Nature"},{"key":"9645_CR45","doi-asserted-by":"publisher","first-page":"107","DOI":"10.1016\/j.plrev.2015.09.002","volume":"15","author":"M Mannino","year":"2015","unstructured":"Mannino, M., & Bressler, S. L. (2015). Foundational perspectives on causality in large-scale brain networks. Physics of Life Reviews, 15, 107\u2013123. https:\/\/doi.org\/10.1016\/j.plrev.2015.09.002","journal-title":"Physics of Life Reviews"},{"issue":"7902","key":"9645_CR46","doi-asserted-by":"publisher","first-page":"654","DOI":"10.1038\/s41586-022-04492-9","volume":"603","author":"S Marek","year":"2022","unstructured":"Marek, S., Tervo-Clemmens, B., Calabro, F. J., Montez, D. F., Kay, B. P., Hatoum, A. S., & Dosenbach, N. U. F. (2022). Reproducible brain-wide association studies require thousands of individuals. Nature, 603(7902), 654\u2013660. https:\/\/doi.org\/10.1038\/s41586-022-04492-9","journal-title":"Nature"},{"key":"9645_CR47","doi-asserted-by":"publisher","first-page":"72","DOI":"10.1016\/j.jpsychires.2020.09.028","volume":"132","author":"TD Meram","year":"2021","unstructured":"Meram, T. D., Chowdury, A., Easter, P., Attisha, T., Kallabat, E., Hanna, G. L., Arnold, P., Rosenberg, D. R., & Diwadkar, V. A. (2021). Evoking network profiles of the dorsal anterior cingulate in youth with Obsessive-Compulsive Disorder during motor control and working memory. Journal of Psychiatric Research, 132, 72\u201383.","journal-title":"Journal of Psychiatric Research"},{"issue":"23","key":"9645_CR48","doi-asserted-by":"publisher","first-page":"1442","DOI":"10.1016\/j.cub.2020.10.009","volume":"30","author":"IE Monosov","year":"2020","unstructured":"Monosov, I. E., Haber, S. N., Leuthardt, E. C., & Jezzini, A. (2020). Anterior cingulate cortex and the control of dynamic behavior in primates. Current Biology, 30(23), 1442\u20131454.","journal-title":"Current Biology"},{"issue":"6","key":"9645_CR49","doi-asserted-by":"publisher","first-page":"985","DOI":"10.1007\/s10548-018-0664-5","volume":"31","author":"A Morris","year":"2018","unstructured":"Morris, A., Ravishankar, M., Pivetta, L., Chowdury, A., Falco, D., Damoiseaux, J. S., Rosenberg, D. R., Bressler, S. L., & Diwadkar, V. A. (2018). Response hand and motor set differentially modulate the connectivity of brain pathways during simple uni-manual motor behavior. Brain Topography, 31(6), 985\u20131000.","journal-title":"Brain Topography"},{"issue":"6","key":"9645_CR50","doi-asserted-by":"publisher","first-page":"e38931","DOI":"10.1371\/journal.pone.0038931","volume":"7","author":"V Muller","year":"2012","unstructured":"Muller, V., & Anokhin, A. P. (2012). Neural synchrony during response production and inhibition. PLoS ONE, 7(6), e38931.","journal-title":"PLoS ONE"},{"issue":"2","key":"9645_CR51","doi-asserted-by":"publisher","first-page":"47","DOI":"10.18608\/jla.2017.42.6","volume":"4","author":"E Munch","year":"2017","unstructured":"Munch, E. (2017). A user\u2019s guide to topological data analysis. Journal of Learning Analytics, 4(2), 47\u201361.","journal-title":"Journal of Learning Analytics"},{"issue":"9","key":"9645_CR52","doi-asserted-by":"publisher","first-page":"3188","DOI":"10.1002\/hbm.23233","volume":"37","author":"O Muzik","year":"2016","unstructured":"Muzik, O., & Diwadkar, V. A. (2016). In vivo correlates of thermoregulatory defense in humans: Temporal course of sub-cortical and cortical responses assessed with fMRI. Human Brain Mapping, 37(9), 3188\u20133202.","journal-title":"Human Brain Mapping"},{"issue":"6","key":"9645_CR53","doi-asserted-by":"publisher","first-page":"1009094","DOI":"10.1371\/journal.pcbi.1009094","volume":"17","author":"JT Nardini","year":"2021","unstructured":"Nardini, J. T., Stolz, B. J., Flores, K. B., Harrington, H. A., & Byrne, H. M. (2021). Topological data analysis distinguishes parameter regimes in the Anderson-Chaplain model of angiogenesis. PLoS Computational Biology, 17(6), 1009094. https:\/\/doi.org\/10.1371\/journal.pcbi.1009094","journal-title":"PLoS Computational Biology"},{"issue":"8","key":"9645_CR54","doi-asserted-by":"publisher","first-page":"761","DOI":"10.1176\/appi.ajp.2020.20091340","volume":"178","author":"CL Nord","year":"2021","unstructured":"Nord, C. L., Lawson, R. P., & Dalgleish, T. (2021). Disrupted dorsal mid-insula activation during interoception across psychiatric disorders. American Journal of Psychiatry, 178(8), 761\u2013770. https:\/\/doi.org\/10.1176\/appi.ajp.2020.20091340","journal-title":"American Journal of Psychiatry"},{"key":"9645_CR55","doi-asserted-by":"publisher","DOI":"10.1093\/bioinformatics\/btac440","author":"AW Nowakowska","year":"2022","unstructured":"Nowakowska, A. W., & Kotulska, M. (2022). Topological analysis as a tool for detection of abnormalities in protein-protein interaction data. Bioinformatics. https:\/\/doi.org\/10.1093\/bioinformatics\/btac440","journal-title":"Bioinformatics"},{"key":"9645_CR56","doi-asserted-by":"publisher","first-page":"906","DOI":"10.1016\/j.jad.2020.12.085","volume":"282","author":"A Oliva","year":"2021","unstructured":"Oliva, A., Torre, S., Taranto, P., Delvecchio, G., & Brambilla, P. (2021). Neural correlates of emotional processing in panic disorder: A mini review of functional magnetic resonance imaging studies. Journal of Affective Disorders, 282, 906\u2013914.","journal-title":"Journal of Affective Disorders"},{"issue":"6","key":"9645_CR57","doi-asserted-by":"publisher","first-page":"417","DOI":"10.1038\/35077500","volume":"2","author":"T Paus","year":"2001","unstructured":"Paus, T. (2001). Primate anterior cingulate cortex: Where motor control, drive and cognition interface. Nature Reviews Neuroscience, 2(6), 417\u2013424.","journal-title":"Nature Reviews Neuroscience"},{"key":"9645_CR58","doi-asserted-by":"publisher","DOI":"10.1007\/978-3-642-36104-3","volume-title":"Topological signal processing","author":"M Robinson","year":"2014","unstructured":"Robinson, M. (2014). Topological signal processing. Springer Berlin Heidelberg. https:\/\/doi.org\/10.1007\/978-3-642-36104-3"},{"issue":"1","key":"9645_CR59","doi-asserted-by":"publisher","first-page":"4791","DOI":"10.1038\/s41467-022-32381-2","volume":"13","author":"M Saggar","year":"2022","unstructured":"Saggar, M., Shine, J. M., Liegeois, R., Dosenbach, N. U. F., & Fair, D. (2022). Precision dynamical mapping using topological data analysis reveals a hub-like transition state at rest. Nature Communications, 13(1), 4791. https:\/\/doi.org\/10.1038\/s41467-022-32381-2","journal-title":"Nature Communications"},{"issue":"1","key":"9645_CR60","doi-asserted-by":"publisher","first-page":"1399","DOI":"10.1038\/s41467-018-03664-4","volume":"9","author":"M Saggar","year":"2018","unstructured":"Saggar, M., Sporns, O., Gonzalez-Castillo, J., Bandettini, P. A., Carlsson, G., Glover, G., & Reiss, A. L. (2018). Towards a new approach to reveal dynamical organization of the brain using topological data analysis. Nature Communications, 9(1), 1399. https:\/\/doi.org\/10.1038\/s41467-018-03664-4","journal-title":"Nature Communications"},{"issue":"8","key":"9645_CR61","doi-asserted-by":"publisher","first-page":"e0255859","DOI":"10.1371\/journal.pone.0255859","volume":"16","author":"A Salch","year":"2021","unstructured":"Salch, A., Regalski, A., Abdallah, H., Suryadevara, R., Catanzaro, M. J., & Diwadkar, V. A. (2021). From mathematics to medicine: A practical primer on topological data analysis (TDA) and the development of related analytic tools for the functional discovery of latent structure in fMRI data. PLoS ONE, 16(8), e0255859. https:\/\/doi.org\/10.1371\/journal.pone.0255859","journal-title":"PLoS ONE"},{"key":"9645_CR62","doi-asserted-by":"publisher","first-page":"105228","DOI":"10.1016\/j.cnsns.2020.105228","volume":"85","author":"K Sasaki","year":"2020","unstructured":"Sasaki, K., Bruder, D., & Hernandez-Vargas, E. A. (2020). Topological data analysis to model the shape of immune responses during co-infections. Communications in Nonlinear Science and Numerical Simulation, 85, 105228. https:\/\/doi.org\/10.1016\/j.cnsns.2020.105228","journal-title":"Communications in Nonlinear Science and Numerical Simulation"},{"issue":"6619","key":"9645_CR63","doi-asserted-by":"publisher","first-page":"505","DOI":"10.1126\/science.abq2591","volume":"378","author":"M Schotten","year":"2022","unstructured":"Schotten, M., & Forkel, S. J. (2022). The emergent properties of the connected brain. Science, 378(6619), 505\u2013510. https:\/\/doi.org\/10.1126\/science.abq2591","journal-title":"Science"},{"key":"9645_CR64","doi-asserted-by":"publisher","first-page":"132","DOI":"10.3389\/fpsyt.2016.00132","volume":"7","author":"B Silverstein","year":"2016","unstructured":"Silverstein, B., Bressler, S., & Diwadkar, V. A. (2016). Inferring the dysconnection syndrome in schizophrenia: Interpretational considerations on methods for the network analyses of fMRI data. Front Psychiatry, 7, 132.","journal-title":"Front Psychiatry"},{"issue":"3","key":"9645_CR65","doi-asserted-by":"publisher","first-page":"656","DOI":"10.1162\/netn_a_00073","volume":"3","author":"AE Sizemore","year":"2019","unstructured":"Sizemore, A. E., Phillips-Cremins, J. E., Ghrist, R., & Bassett, D. S. (2019). The importance of the whole: Topological data analysis for the network neuroscientist. Network Neuroscience, 3(3), 656\u2013673. https:\/\/doi.org\/10.1162\/netn_a_00073","journal-title":"Network Neuroscience"},{"key":"9645_CR66","doi-asserted-by":"publisher","first-page":"104082","DOI":"10.1016\/j.jbi.2022.104082","volume":"130","author":"Y Skaf","year":"2022","unstructured":"Skaf, Y., & Laubenbacher, R. (2022). Topological data analysis in biomedicine: A review. Journal of Biomedical Informatics, 130, 104082. https:\/\/doi.org\/10.1016\/j.jbi.2022.104082","journal-title":"Journal of Biomedical Informatics"},{"issue":"9","key":"9645_CR67","doi-asserted-by":"publisher","first-page":"2931","DOI":"10.1007\/s00429-021-02325-5","volume":"226","author":"AT Smith","year":"2021","unstructured":"Smith, A. T. (2021). Cortical visual area CSv as a cingulate motor area: A sensorimotor interface for the control of locomotion. Brain Structure and Function, 226(9), 2931\u20132950.","journal-title":"Brain Structure and Function"},{"key":"9645_CR68","doi-asserted-by":"publisher","first-page":"76","DOI":"10.1016\/j.pscychresns.2016.12.009","volume":"260","author":"PH Soloff","year":"2017","unstructured":"Soloff, P. H., Abraham, K., Burgess, A., Ramaseshan, K., Chowdury, A., & Diwadkar, V. A. (2017). Impulsivity and aggression mediate regional brain responses in Borderline Personality Disorder: An fMRI study. Psychiatry Research, 260, 76\u201385. https:\/\/doi.org\/10.1016\/j.pscychresns.2016.12.009","journal-title":"Psychiatry Research"},{"key":"9645_CR69","doi-asserted-by":"publisher","first-page":"443","DOI":"10.1111\/j.0021-8782.2004.00359.x","volume":"205","author":"KE Stephan","year":"2004","unstructured":"Stephan, K. E. (2004). On the role of general system theory for functional neuroimaging. Journal of Anatomy, 205, 443\u2013470.","journal-title":"Journal of Anatomy"},{"issue":"1","key":"9645_CR70","doi-asserted-by":"publisher","first-page":"15","DOI":"10.2174\/157340506775541659","volume":"2","author":"KE Stephan","year":"2006","unstructured":"Stephan, K. E., Mattout, J., David, O., & Friston, K. J. (2006). Models of functional neuroimaging data. Current Medical Imaging, 2(1), 15\u201334.","journal-title":"Current Medical Imaging"},{"issue":"3","key":"9645_CR71","doi-asserted-by":"publisher","first-page":"737","DOI":"10.1007\/s12021-022-09568-5","volume":"20","author":"C Tan","year":"2022","unstructured":"Tan, C., Liu, X., & Zhang, G. (2022). Inferring brain state dynamics underlying naturalistic stimuli evoked emotion changes with dHA-HMM. Neuroinformatics, 20(3), 737\u2013753. https:\/\/doi.org\/10.1007\/s12021-022-09568-5","journal-title":"Neuroinformatics"},{"key":"9645_CR72","doi-asserted-by":"crossref","unstructured":"Tang, W., Jbabdi, S., Zhu, Z., Cottaar, M., Grisot, G., Lehman, J. F., Yendiki, A., & Haber, S. N. (2019). A connectional hub in the rostral anterior cingulate cortex links areas of emotion and cognitive control.","DOI":"10.7554\/eLife.43761.022"},{"issue":"1","key":"9645_CR73","doi-asserted-by":"publisher","first-page":"273","DOI":"10.1006\/nimg.2001.0978","volume":"15","author":"N Tzourio-Mazoyer","year":"2002","unstructured":"Tzourio-Mazoyer, N., Landeau, B., Papathanassiou, D., Crivello, F., Etard, O., Delcroix, N., Mazoyer, B., & Joliot, M. (2002). Automated anatomical labeling of activations in SPM using a macroscopic anatomical parcellation of the MNI MRI single-subject brain. NeuroImage, 15(1), 273\u2013289.","journal-title":"NeuroImage"},{"key":"9645_CR74","volume-title":"General systems theory","author":"K Von Bertalanffy","year":"1968","unstructured":"Von Bertalanffy, K. (1968). General systems theory. Brazilier."},{"issue":"3","key":"9645_CR75","doi-asserted-by":"publisher","first-page":"1506","DOI":"10.1214\/17-AOAS1119","volume":"12","author":"Y Wang","year":"2018","unstructured":"Wang, Y., Ombao, H., & Chung, M. K. (2018). Topological data analysis of single-trial electroencephalographic signals. The Annals of Applied Statistics, 12(3), 1506\u20131534. https:\/\/doi.org\/10.1214\/17-AOAS1119","journal-title":"The Annals of Applied Statistics"},{"issue":"411","key":"9645_CR76","doi-asserted-by":"publisher","first-page":"693","DOI":"10.1080\/01621459.1990.10474929","volume":"85","author":"WJ Welch","year":"1990","unstructured":"Welch, W. J. (1990). Construction of permutation tests. Journal of the American Statistical Association, 85(411), 693\u2013698. https:\/\/doi.org\/10.1080\/01621459.1990.10474929","journal-title":"Journal of the American Statistical Association"},{"issue":"2","key":"9645_CR77","doi-asserted-by":"publisher","first-page":"801","DOI":"10.1016\/j.neuroimage.2011.10.047","volume":"62","author":"MW Woolrich","year":"2012","unstructured":"Woolrich, M. W. (2012). Bayesian inference in FMRI. NeuroImage, 62(2), 801\u2013810.","journal-title":"NeuroImage"},{"key":"9645_CR78","doi-asserted-by":"publisher","first-page":"27","DOI":"10.1080\/09332480.1996.10542483","volume":"9","author":"KJ Worsley","year":"1996","unstructured":"Worsley, K. J. (1996). The geometry of random images. Chance, 9, 27\u201340.","journal-title":"Chance"},{"issue":"2","key":"9645_CR79","doi-asserted-by":"publisher","first-page":"112","DOI":"10.4103\/2347-5625.308301","volume":"8","author":"J Yu","year":"2021","unstructured":"Yu, J., & Chang, X. (2021). Topological data analysis: A new method to identify genetic alterations in cancer. Asia-Pacific Journal of Oncology Nursing, 8(2), 112\u2013114. https:\/\/doi.org\/10.4103\/2347-5625.308301","journal-title":"Asia-Pacific Journal of Oncology Nursing"}],"container-title":["Neuroinformatics"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/link.springer.com\/content\/pdf\/10.1007\/s12021-023-09645-3.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/link.springer.com\/article\/10.1007\/s12021-023-09645-3\/fulltext.html","content-type":"text\/html","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/link.springer.com\/content\/pdf\/10.1007\/s12021-023-09645-3.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2024,3,6]],"date-time":"2024-03-06T08:15:22Z","timestamp":1709712922000},"score":1,"resource":{"primary":{"URL":"https:\/\/link.springer.com\/10.1007\/s12021-023-09645-3"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2023,11,4]]},"references-count":79,"journal-issue":{"issue":"1","published-online":{"date-parts":[[2024,1]]}},"alternative-id":["9645"],"URL":"https:\/\/doi.org\/10.1007\/s12021-023-09645-3","relation":{},"ISSN":["1559-0089"],"issn-type":[{"type":"electronic","value":"1559-0089"}],"subject":[],"published":{"date-parts":[[2023,11,4]]},"assertion":[{"value":"11 October 2023","order":1,"name":"accepted","label":"Accepted","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"4 November 2023","order":2,"name":"first_online","label":"First Online","group":{"name":"ArticleHistory","label":"Article History"}},{"order":1,"name":"Ethics","group":{"name":"EthicsHeading","label":"Declarations"}},{"value":"The authors have declared that no competing interests exist.","order":2,"name":"Ethics","group":{"name":"EthicsHeading","label":"Competing Interests"}}]}}