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The previous version of the Melbourne Children's Regional Infant Brain (M-CRIB-S) (Adamson et al. <jats:italic>Scientific Reports, 10<\/jats:italic>(1), 10, 2020) is a software package that performs whole-brain segmentation, cortical surface extraction and parcellation of the neonatal brain. Available cortical parcellation schemes in the M-CRIB-S are the adult-compatible 34- and 31-region per hemisphere Desikan-Killiany (DK) and Desikan-Killiany-Tourville (DKT), respectively. We present a major update to the software package which achieves two aims: 1) to make the voxel-based segmentation outputs derived from the <jats:italic>Freesurfer<\/jats:italic>-compatible M-CRIB scheme, and 2) to improve the accuracy of whole-brain segmentation and cortical surface extraction. Cortical surface extraction has been improved with additional steps to improve penetration of the inner surface into thin gyri. The improved cortical surface extraction is shown to increase the robustness of measures such as surface area, cortical thickness, and cortical volume.<\/jats:p>","DOI":"10.1007\/s12021-024-09656-8","type":"journal-article","created":{"date-parts":[[2024,3,16]],"date-time":"2024-03-16T13:01:46Z","timestamp":1710594106000},"page":"207-223","update-policy":"https:\/\/doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":4,"title":["Updates to the Melbourne Children\u2019s Regional Infant Brain Software Package (M-CRIB-S)"],"prefix":"10.1007","volume":"22","author":[{"ORCID":"https:\/\/orcid.org\/0000-0002-8084-8305","authenticated-orcid":false,"given":"Chris L.","family":"Adamson","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-1108-5890","authenticated-orcid":false,"given":"Bonnie","family":"Alexander","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-6564-0872","authenticated-orcid":false,"given":"Claire E.","family":"Kelly","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-3509-1435","authenticated-orcid":false,"given":"Gareth","family":"Ball","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-7530-5664","authenticated-orcid":false,"given":"Richard","family":"Beare","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-5901-0455","authenticated-orcid":false,"given":"Jeanie L. Y.","family":"Cheong","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-6535-661X","authenticated-orcid":false,"given":"Alicia J.","family":"Spittle","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-7667-7312","authenticated-orcid":false,"given":"Lex W.","family":"Doyle","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-7430-868X","authenticated-orcid":false,"given":"Peter J.","family":"Anderson","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-8396-140X","authenticated-orcid":false,"given":"Marc L.","family":"Seal","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-8017-5756","authenticated-orcid":false,"given":"Deanne K.","family":"Thompson","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"297","published-online":{"date-parts":[[2024,3,16]]},"reference":[{"issue":"1","key":"9656_CR1","doi-asserted-by":"publisher","first-page":"10","DOI":"10.1038\/s41598-020-61326-2","volume":"10","author":"CL Adamson","year":"2020","unstructured":"Adamson, C. L., Alexander, B., Ball, G., Beare, R., Cheong, J. L. Y., Spittle, A. J., Doyle, L. W., Anderson, P. J., Seal, M. L., & Thompson, D. K. (2020). Parcellation of the neonatal cortex using surface-based Melbourne Children\u2019s Regional Infant Brain atlases (M-CRIB-S). Scientific Reports, 10(1), 10. https:\/\/doi.org\/10.1038\/s41598-020-61326-2","journal-title":"Scientific Reports"},{"key":"9656_CR2","doi-asserted-by":"publisher","first-page":"841","DOI":"10.1016\/j.neuroimage.2016.09.068","volume":"147","author":"B Alexander","year":"2017","unstructured":"Alexander, B., Murray, A. L., Loh, W. Y., Matthews, L. G., Adamson, C., Beare, R., Chen, J., Kelly, C. E., Rees, S., Warfield, S. K., Anderson, P. J., Doyle, L. W., Spittle, A. J., Cheong, J. L., Seal, M. L., & Thompson, D. K. (2017). A new neonatal cortical and subcortical brain atlas: The Melbourne Children\u2019s Regional Infant Brain (M-CRIB) atlas. 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