{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2023,1,28]],"date-time":"2023-01-28T03:08:41Z","timestamp":1674875321320},"reference-count":13,"publisher":"Springer Science and Business Media LLC","issue":"2","license":[{"start":{"date-parts":[[2008,5,1]],"date-time":"2008-05-01T00:00:00Z","timestamp":1209600000000},"content-version":"tdm","delay-in-days":0,"URL":"http:\/\/www.springer.com\/tdm"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["Theory Biosci."],"published-print":{"date-parts":[[2008,5]]},"DOI":"10.1007\/s12064-008-0030-3","type":"journal-article","created":{"date-parts":[[2008,5,5]],"date-time":"2008-05-05T08:08:42Z","timestamp":1209974922000},"page":"79-88","source":"Crossref","is-referenced-by-count":3,"title":["Topology-based abstraction of complex biological systems: application to the Golgi apparatus"],"prefix":"10.1007","volume":"127","author":[{"given":"Mathieu","family":"Poudret","sequence":"first","affiliation":[]},{"given":"Agn\u00e8s","family":"Arnould","sequence":"additional","affiliation":[]},{"given":"Jean-Paul","family":"Comet","sequence":"additional","affiliation":[]},{"given":"Pascale","family":"Le Gall","sequence":"additional","affiliation":[]},{"given":"Philippe","family":"Meseure","sequence":"additional","affiliation":[]},{"given":"Fran\u00e7ois","family":"K\u00e9p\u00e8s","sequence":"additional","affiliation":[]}],"member":"297","published-online":{"date-parts":[[2008,5,6]]},"reference":[{"key":"30_CR1","unstructured":"Alberts B (2002) Molecular biology of the cell, 4th edn. Garland Science"},{"issue":"3","key":"30_CR2","doi-asserted-by":"crossref","first-page":"339","DOI":"10.1016\/j.jtbi.2004.04.003","volume":"229","author":"G Bernot","year":"2004","unstructured":"Bernot G, Comet J-P, Richard A, Guespin J (2004) Application of formal methods to biological regulatory networks: extending Thomas\u2019 asynchronous logical approach with temporal logic. J Theor Biol 229(3):339\u2013347","journal-title":"J Theor Biol"},{"issue":"14","key":"30_CR3","doi-asserted-by":"crossref","first-page":"1805","DOI":"10.1093\/bioinformatics\/btl172","volume":"22","author":"L Calzone","year":"2006","unstructured":"Calzone L, Fages F, Soliman S (2006) Biocham: an environment for modeling biological systems and formalizing experimental knowledge. Bioinformatics 22(14):1805\u20131807","journal-title":"Bioinformatics"},{"key":"30_CR4","doi-asserted-by":"crossref","unstructured":"Cardelli L (2005) Brane calculi. Interactions of biological membranes. In: Procceedings of computational methods in systems biology, vol 3082, Lecture notes in bioInformatics. Springer, Heidelberg, pp 257\u2013280","DOI":"10.1007\/978-3-540-25974-9_24"},{"key":"30_CR5","volume-title":"Fundamentals of algebraic graph transformation (Monographs in theoretical computer science. An EATCS series)","author":"H Ehrig","year":"2006","unstructured":"Ehrig H, Ehrig K, Prange U, Taentzer G (2006) Fundamentals of algebraic graph transformation (Monographs in theoretical computer science. An EATCS series). Springer, Secaucus"},{"issue":"3","key":"30_CR6","doi-asserted-by":"crossref","first-page":"808","DOI":"10.1529\/biophysj.106.093104","volume":"92","author":"N Eungdamrong","year":"2007","unstructured":"Eungdamrong N, Iyengar R (2007) Compartment-specific feedback loop and regulated trafficking can result in sustained activation of ras at the Golgi. Biophys J 92(3):808\u2013815","journal-title":"Biophys J"},{"key":"30_CR7","doi-asserted-by":"crossref","first-page":"55","DOI":"10.1016\/S0074-7696(04)42002-6","volume":"242","author":"F K\u00e9p\u00e8s","year":"2004","unstructured":"K\u00e9p\u00e8s F, Rambourg A, Satiat-Jeunema\u00eetre B (2004) Morphodynamics of the secretory pathway. Int Rev Cytol 242:55\u2013120","journal-title":"Int Rev Cytol"},{"key":"30_CR8","doi-asserted-by":"crossref","unstructured":"Lienhardt P (1989) Subdivision of n-dimensional spaces and n-dimensional generalized maps. In: SCG\u201989. ACM Press, pp 228\u2013236","DOI":"10.1145\/73833.73859"},{"issue":"2B","key":"30_CR9","doi-asserted-by":"crossref","first-page":"627","DOI":"10.1142\/S0219720007002850","volume":"5","author":"D Mateus","year":"2007","unstructured":"Mateus D, Gallois J-P, Comet J-P, Le Gall P (2007) Symbolic modeling of genetic regulatory networks. J Bioinform Comput Biol 5(2B):627\u2013640","journal-title":"J Bioinform Comput Biol"},{"key":"30_CR10","unstructured":"Poudret M, Comet J-P, Le Gall P, Arnould A, Meseure P (2007) Topology-based geometric modelling for biological cellular processes. In: LATA\u201907. Available at http:\/\/grammars.grlmc.com\/LATA2007\/proc.html"},{"key":"30_CR11","doi-asserted-by":"crossref","first-page":"187","DOI":"10.1038\/417187a","volume":"417","author":"JF Presley","year":"2002","unstructured":"Presley JF, Ward TH, Pfeifer AC, Siggia ED, Phair RD, Lippincott-Schwartz J (2002) Dissection of COPI and Arf1 dynamics in vivo and role in Golgi membrane transport. Nature 417:187\u2013193","journal-title":"Nature"},{"issue":"4","key":"30_CR12","doi-asserted-by":"crossref","first-page":"455","DOI":"10.1002\/aja.1001540402","volume":"154","author":"A Rambourg","year":"1979","unstructured":"Rambourg A, Clermont Y, L H (1979) Three-dimensional architecture of the Golgi apparatus in sertoli cells of the rat. Am J Anat 154(4):455\u2013476","journal-title":"Am J Anat"},{"issue":"1","key":"30_CR13","doi-asserted-by":"crossref","first-page":"141","DOI":"10.1016\/j.tcs.2004.03.061","volume":"325","author":"A Regev","year":"2004","unstructured":"Regev A, Panina EM, Silverman W, Cardelli L, Shapiro E (2004) Bioambients: an abstraction for biological compartments. Theor Comput Sci 325(1):141\u2013167","journal-title":"Theor Comput Sci"}],"container-title":["Theory in Biosciences"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/s12064-008-0030-3.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/article\/10.1007\/s12064-008-0030-3\/fulltext.html","content-type":"text\/html","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/s12064-008-0030-3","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2019,6,2]],"date-time":"2019-06-02T03:33:20Z","timestamp":1559446400000},"score":1,"resource":{"primary":{"URL":"http:\/\/link.springer.com\/10.1007\/s12064-008-0030-3"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2008,5]]},"references-count":13,"journal-issue":{"issue":"2","published-print":{"date-parts":[[2008,5]]}},"alternative-id":["30"],"URL":"https:\/\/doi.org\/10.1007\/s12064-008-0030-3","relation":{},"ISSN":["1431-7613","1611-7530"],"issn-type":[{"value":"1431-7613","type":"print"},{"value":"1611-7530","type":"electronic"}],"subject":[],"published":{"date-parts":[[2008,5]]}}}