{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,2,21]],"date-time":"2026-02-21T10:20:27Z","timestamp":1771669227200,"version":"3.50.1"},"reference-count":31,"publisher":"Springer Science and Business Media LLC","issue":"3","license":[{"start":{"date-parts":[[2009,8,1]],"date-time":"2009-08-01T00:00:00Z","timestamp":1249084800000},"content-version":"tdm","delay-in-days":0,"URL":"http:\/\/www.springer.com\/tdm"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["Theory Biosci."],"published-print":{"date-parts":[[2009,8]]},"DOI":"10.1007\/s12064-009-0071-2","type":"journal-article","created":{"date-parts":[[2009,8,20]],"date-time":"2009-08-20T11:16:01Z","timestamp":1250766961000},"page":"157-161","source":"Crossref","is-referenced-by-count":6,"title":["Scherrer and Jost\u2019s symposium: the gene concept in 2008"],"prefix":"10.1007","volume":"128","author":[{"given":"Donald R.","family":"Forsdyke","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"297","published-online":{"date-parts":[[2009,8,21]]},"reference":[{"key":"71_CR1","doi-asserted-by":"crossref","first-page":"817","DOI":"10.1146\/annurev.biochem.71.110601.135501","volume":"71","author":"BL Bass","year":"2002","unstructured":"Bass BL (2002) RNA editing by adenosine deaminases that act on RNA. Annu Rev Biochem 71:817\u2013846","journal-title":"Annu Rev Biochem"},{"key":"71_CR2","first-page":"21","volume-title":"Mind and nature. A necessary unity","author":"G Bateson","year":"1979","unstructured":"Bateson G (1979) Mind and nature. A necessary unity. Dutton, New York, p 21"},{"key":"71_CR3","doi-asserted-by":"crossref","first-page":"D26","DOI":"10.1093\/nar\/gkn723","volume":"37","author":"DA Benson","year":"2009","unstructured":"Benson DA, Karsch-Mizrachi I, Lipman DJ, Ostell J, Sayers EW (2009) GenBank. Nucleic Acids Res 37:D26\u2013D31","journal-title":"Nucleic Acids Res"},{"key":"71_CR4","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1007\/BF02099946","volume":"24","author":"G Bernardi","year":"1986","unstructured":"Bernardi G, Bernardi G (1986) Compositional constraints and genome evolution. J Mol Evol 24:1\u201311","journal-title":"J Mol Evol"},{"issue":"11","key":"71_CR5","doi-asserted-by":"crossref","first-page":"e283","DOI":"10.1371\/journal.pbio.0060283","volume":"6","author":"F Catania","year":"2008","unstructured":"Catania F, Lynch M (2008) Where do introns come from? PLoS Biol 6(11):e283","journal-title":"PLoS Biol"},{"key":"71_CR6","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1111\/j.1095-8312.1977.tb00256.x","volume":"9","author":"AG Cock","year":"1977","unstructured":"Cock AG (1977) Bernard\u2019s symposium. The species concept in 1900. Biol J Linn Soc 9:1\u201330","journal-title":"Biol J Linn Soc"},{"key":"71_CR7","doi-asserted-by":"crossref","DOI":"10.1007\/978-0-387-75688-2","volume-title":"Treasure your exceptions. The science and life of William Bateson","author":"AG Cock","year":"2008","unstructured":"Cock AG, Forsdyke DR (2008) Treasure your exceptions. The science and life of William Bateson. Springer, New York"},{"key":"71_CR8","doi-asserted-by":"crossref","first-page":"475","DOI":"10.1006\/jtbi.2000.2233","volume":"208","author":"AD Cristillo","year":"2001","unstructured":"Cristillo AD, Mortimer JR, Barrette IH, Lillicrap TP, Forsdyke DR (2001) Double-stranded RNA as a not-self alarm signal: to evade, most viruses purine-load their RNAs, but some (HTLV-1, Epstein-Barr) pyrimidine-load. J Theor Biol 208:475\u2013491","journal-title":"J Theor Biol"},{"key":"71_CR9","doi-asserted-by":"crossref","first-page":"223","DOI":"10.1016\/S0079-6603(02)72071-0","volume":"72","author":"G Cristofari","year":"2002","unstructured":"Cristofari G, Darlix J-L (2002) The ubiquitous nature of RNA chaperone proteins. Prog Nucleic Acid Res Mol Biol 72:223\u2013268","journal-title":"Prog Nucleic Acid Res Mol Biol"},{"key":"71_CR10","doi-asserted-by":"crossref","first-page":"30090","DOI":"10.1074\/jbc.M803290200","volume":"283","author":"C Daskalogianni","year":"2008","unstructured":"Daskalogianni C, Apcher S, Candeias MM, Naski N, Calvo F, Fahr\u00e4eus R (2008) Gly-Ala repeats induce position- and substrate-specific regulation of 26S proteosome-dependent partial processing. J Biol Chem 283:30090\u201330100","journal-title":"J Biol Chem"},{"key":"71_CR11","doi-asserted-by":"crossref","DOI":"10.1515\/9780773569621","volume-title":"The origin of species, revisited","author":"DR Forsdyke","year":"2001","unstructured":"Forsdyke DR (2001) The origin of species, revisited. McGill-Queen\u2019s University Press, Montreal"},{"key":"71_CR12","doi-asserted-by":"crossref","first-page":"411","DOI":"10.1016\/S1471-4922(02)02342-5","volume":"18","author":"DR Forsdyke","year":"2002","unstructured":"Forsdyke DR (2002) Selective pressures that decrease synonymous mutations in Plasmodium falciparum. Trends Parasitol 18:411\u2013418","journal-title":"Trends Parasitol"},{"key":"71_CR13","doi-asserted-by":"crossref","DOI":"10.1007\/978-0-387-33419-6","volume-title":"Evolutionary bioinformatics","author":"DR Forsdyke","year":"2006","unstructured":"Forsdyke DR (2006) Evolutionary bioinformatics. Springer, New York"},{"key":"71_CR14","doi-asserted-by":"crossref","first-page":"127","DOI":"10.1016\/S0378-1119(00)00472-8","volume":"261","author":"DR Forsdyke","year":"2000","unstructured":"Forsdyke DR, Mortimer JR (2000) Chargaff\u2019s legacy. Gene 261:127\u2013137","journal-title":"Gene"},{"key":"71_CR15","doi-asserted-by":"crossref","first-page":"327","DOI":"10.1016\/0968-0004(80)90143-7","volume":"5","author":"R Grantham","year":"1980","unstructured":"Grantham R (1980) Workings of the genetic code. Trends Biochem Sci 5:327\u2013331","journal-title":"Trends Biochem Sci"},{"key":"71_CR16","doi-asserted-by":"crossref","first-page":"527","DOI":"10.1016\/0022-2836(66)90025-8","volume":"21","author":"H Greenberg","year":"1966","unstructured":"Greenberg H, Penman S (1966) Methylation and processing of ribosomal RNA in HeLa cells. J Mol Biol 21:527\u2013535","journal-title":"J Mol Biol"},{"key":"71_CR17","doi-asserted-by":"crossref","first-page":"499","DOI":"10.1007\/s11017-006-9020-y","volume":"27","author":"PE Griffiths","year":"2006","unstructured":"Griffiths PE, Stotz K (2006) Genes in the postgenomic era. Theor Med Bioethics 27:499\u2013521","journal-title":"Theor Med Bioethics"},{"key":"71_CR18","doi-asserted-by":"crossref","first-page":"685","DOI":"10.1038\/375685a0","volume":"375","author":"J Levitskaya","year":"1995","unstructured":"Levitskaya J, Coram M, Levitsky V, Imreh S, Steigerwald-Mullen PM, Klein G, Kurilla MG, Masucci MG (1995) Inhibition of antigen processing by the internal repeat region of the Epstein-Barr virus nuclear antigen-1. Nature 375:685\u2013688","journal-title":"Nature"},{"key":"71_CR19","doi-asserted-by":"crossref","first-page":"71","DOI":"10.1016\/S0168-1702(02)00121-1","volume":"88","author":"V Levitsky","year":"2002","unstructured":"Levitsky V, Masucci MG (2002) Manipulation of immune responses by Epstein\u2013Barr virus. Virus Res 88:71\u201386","journal-title":"Virus Res"},{"key":"71_CR20","volume-title":"Genes IX","author":"B Lewin","year":"2006","unstructured":"Lewin B (2006) Genes IX. Jones and Bartlett, Sudbury"},{"key":"71_CR21","doi-asserted-by":"crossref","first-page":"1867","DOI":"10.1101\/gad.8.16.1867","volume":"8","author":"K Pfeifer","year":"1994","unstructured":"Pfeifer K, Tilghman SM (1994) Allele-specific gene expression in mammals: the curious case of imprinted RNAs. Genes Dev 8:1867\u20131874","journal-title":"Genes Dev"},{"key":"71_CR22","doi-asserted-by":"crossref","first-page":"117","DOI":"10.2165\/00822942-200504020-00005","volume":"4","author":"JH Rayment","year":"2005","unstructured":"Rayment JH, Forsdyke DR (2005) Amino acids as placeholders: base composition pressures on protein length in malaria parasites and prokaryotes. App Bioinformatics 4:117\u2013130","journal-title":"App Bioinformatics"},{"key":"71_CR23","doi-asserted-by":"crossref","first-page":"293","DOI":"10.1016\/0022-5193(71)90167-6","volume":"32","author":"T Schaap","year":"1971","unstructured":"Schaap T (1971) Dual information in DNA and the evolution of the genetic code. J Theor Biol 32:293\u2013298","journal-title":"J Theor Biol"},{"key":"71_CR24","doi-asserted-by":"crossref","first-page":"486","DOI":"10.1016\/0006-291X(62)90341-8","volume":"7","author":"K Scherrer","year":"1962","unstructured":"Scherrer K, Darnell JE (1962) Sedimentation characteristics of rapidly labeled RNA from Hela cells. Biochem Biophys Res Comm 7:486\u2013490","journal-title":"Biochem Biophys Res Comm"},{"key":"71_CR25","doi-asserted-by":"crossref","first-page":"65","DOI":"10.1007\/s12064-007-0012-x","volume":"126","author":"K Scherrer","year":"2007","unstructured":"Scherrer K, Jost J (2007) Gene and genon concept: coding versus regulation. A conceptual and information-theoretic analysis of genetic storage and expression in the light of modern molecular biology. Theory Biosci 126:65\u2013113","journal-title":"Theory Biosci"},{"key":"71_CR26","doi-asserted-by":"crossref","first-page":"9135","DOI":"10.1073\/pnas.0804456105","volume":"105","author":"SR Starck","year":"2008","unstructured":"Starck SR, Cardinaud S, Shastri N (2008) Immune surveillance obstructed by viral mRNA. Proc Natl Acad Sci USA 105:9135\u20139136","journal-title":"Proc Natl Acad Sci USA"},{"key":"71_CR27","doi-asserted-by":"crossref","first-page":"202","DOI":"10.1126\/science.8023140","volume":"265","author":"A Stoltzfus","year":"1994","unstructured":"Stoltzfus A, Spencer DF, Zuker M, Logsdon JM, Doolittle WF (1994) Testing the exon theory of genes: the evidence from protein structure. Science 265:202\u2013207","journal-title":"Science"},{"key":"71_CR28","doi-asserted-by":"crossref","first-page":"9319","DOI":"10.1073\/pnas.0801968105","volume":"105","author":"J Tellam","year":"2008","unstructured":"Tellam J, Smith C, Rist M, Webb N, Cooper L, Vuocolo T, Connolly G, Tscharke DC, Devoy MP, Khanna R (2008) Regulation of protein translation through mRNA structure influences MHC class 1 loading and T cell recognition. Proc Natl Acad Sci USA 105:9319\u20139324","journal-title":"Proc Natl Acad Sci USA"},{"key":"71_CR29","doi-asserted-by":"crossref","first-page":"2480","DOI":"10.1128\/jvi.76.5.2480-2490.2002","volume":"76","author":"H Wu","year":"2002","unstructured":"Wu H, Kapoor P, Frappier L (2002) Separation of the DNA replication, segregation, and transcriptional activation functions of Epstein\u2013Barr nuclear antigen 1. J Virol 76:2480\u20132490","journal-title":"J Virol"},{"key":"71_CR30","doi-asserted-by":"crossref","first-page":"21","DOI":"10.1016\/S0166-6851(03)00039-2","volume":"128","author":"HY Xue","year":"2003","unstructured":"Xue HY, Forsdyke DR (2003) Low complexity segments in Plasmodium falciparum are primarily nucleic acid level adaptations. Mol Biochem Parasitol 128:21\u201332","journal-title":"Mol Biochem Parasitol"},{"key":"71_CR31","first-page":"197","volume":"6","author":"JL Yates","year":"1988","unstructured":"Yates JL, Camiolo SM (1988) Dissection of DNA replication and enhancer activation functions of Epstein\u2013Barr virus nuclear antigen 1. Cancer Cells 6:197\u2013205","journal-title":"Cancer Cells"}],"container-title":["Theory in Biosciences"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/s12064-009-0071-2.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/article\/10.1007\/s12064-009-0071-2\/fulltext.html","content-type":"text\/html","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/s12064-009-0071-2","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2024,3,15]],"date-time":"2024-03-15T23:49:48Z","timestamp":1710546588000},"score":1,"resource":{"primary":{"URL":"http:\/\/link.springer.com\/10.1007\/s12064-009-0071-2"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2009,8]]},"references-count":31,"journal-issue":{"issue":"3","published-print":{"date-parts":[[2009,8]]}},"alternative-id":["71"],"URL":"https:\/\/doi.org\/10.1007\/s12064-009-0071-2","relation":{},"ISSN":["1431-7613","1611-7530"],"issn-type":[{"value":"1431-7613","type":"print"},{"value":"1611-7530","type":"electronic"}],"subject":[],"published":{"date-parts":[[2009,8]]}}}