{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,10,17]],"date-time":"2025-10-17T13:36:41Z","timestamp":1760708201576},"reference-count":39,"publisher":"Springer Science and Business Media LLC","issue":"3","license":[{"start":{"date-parts":[[2010,6,22]],"date-time":"2010-06-22T00:00:00Z","timestamp":1277164800000},"content-version":"tdm","delay-in-days":0,"URL":"http:\/\/www.springer.com\/tdm"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["Memetic Comp."],"published-print":{"date-parts":[[2010,9]]},"DOI":"10.1007\/s12293-010-0045-4","type":"journal-article","created":{"date-parts":[[2010,6,21]],"date-time":"2010-06-21T04:50:08Z","timestamp":1277095808000},"page":"165-181","source":"Crossref","is-referenced-by-count":45,"title":["A hierarchical multi-label classification ant colony algorithm for protein function prediction"],"prefix":"10.1007","volume":"2","author":[{"given":"Fernando E. B.","family":"Otero","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Alex A.","family":"Freitas","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Colin G.","family":"Johnson","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"297","published-online":{"date-parts":[[2010,6,22]]},"reference":[{"key":"45_CR1","doi-asserted-by":"crossref","unstructured":"Alves R, Delgado M, Freitas A (2008) Multi-label hierarchical classification of protein functions with artificial immune systems. In: Advances in bioinformatics and computational biology (Proc. BSB-2008). Lecture Notes in Bioinformatics, vol 5167, pp 1\u201312","DOI":"10.1007\/978-3-540-85557-6_1"},{"issue":"7","key":"45_CR2","doi-asserted-by":"crossref","first-page":"830","DOI":"10.1093\/bioinformatics\/btk048","volume":"22","author":"Z Barutcuoglu","year":"2006","unstructured":"Barutcuoglu Z, Schapire R, Troyanskaya O (2006) Hierarchical multi-label prediction of gene function. Bioinformatics 22(7): 830\u2013836","journal-title":"Bioinformatics"},{"key":"45_CR3","doi-asserted-by":"crossref","first-page":"718","DOI":"10.1016\/j.neucom.2006.10.006","volume":"70","author":"R Bi","year":"2007","unstructured":"Bi R, Zhou Y, Lu F, Wang W (2007) Predicting Gene Ontology functions based on support vector machines and statistical significance estimation. Neurocomputing 70: 718\u2013725","journal-title":"Neurocomputing"},{"key":"45_CR4","doi-asserted-by":"crossref","unstructured":"Blockeel H, D\u017eeroski S, Grbovi\u0107 J (1999) Simultaneous prediction of multiple chemical parameters of river water quality with TILDE. In: Proceedings of the 3rd European Conference on principles of data mining and knowledge discovery. Springer, pp 32\u201340","DOI":"10.1007\/978-3-540-48247-5_4"},{"key":"45_CR5","unstructured":"Blockeel H, Bruynooghe M, D\u017eeroski S, Ramon J, Struyf J (2002) Hierarchical multi-classification. In: D\u017eeroski S, Raedt LD, Wrobel S (eds) Proceedings of the First SIGKDD Workshop on multi-relational data mining (MRDM 2002). University of Alberta, Edmonton, Canada, pp 21\u201335"},{"key":"45_CR6","doi-asserted-by":"crossref","unstructured":"Blockeel H, Schietgat L, Struyf J, D\u017eeroski S, Clare A (2006) Decision trees for hierarchical multilabel classification: a case study in functional genomics. In: PKDD-2006, LNAI 4213, pp 18\u201329","DOI":"10.1007\/11871637_7"},{"key":"45_CR7","unstructured":"Cesa-Bianchi N, Zaniboni L, Collins M (2004) Incremental algorithms for hierarchical classification. J Mach Learn Res 31\u201354"},{"key":"45_CR8","unstructured":"Chan A, Freitas A (2006) A new ant colony algorithm for multi-label classification with applications in bioinformatics. In: Proceedings of the genetic and evolutionary computation conference (GECCO-2006), pp 27\u201334"},{"issue":"9","key":"45_CR9","doi-asserted-by":"crossref","first-page":"1130","DOI":"10.1093\/bioinformatics\/btl051","volume":"22","author":"A Clare","year":"2006","unstructured":"Clare A, Karwath A, Ougham H, King R (2006) Functional bioinformatics for Arabidopsis thailana. Bioinformatics 22(9): 1130\u20131136","journal-title":"Bioinformatics"},{"key":"45_CR10","doi-asserted-by":"crossref","first-page":"25","DOI":"10.1038\/75556","volume":"25","author":"TGO Consortium","year":"2000","unstructured":"Consortium TGO (2000) Gene ontology: tool for the unification of biology. Nat Genet 25: 25\u201329","journal-title":"Nat Genet"},{"key":"45_CR11","doi-asserted-by":"crossref","unstructured":"Davis J, Goadrich M (2006) The relationship between precision-recall and roc curves. In: ICML \u201906: Proceedings of the 23rd International Conference on Machine learning, ACM, pp 233\u2013240","DOI":"10.1145\/1143844.1143874"},{"key":"45_CR12","first-page":"1","volume":"7","author":"J Dem\u0161ar","year":"2006","unstructured":"Dem\u0161ar J (2006) Statistical Comparisons of classifiers over multiple data sets. Mach Learn Res 7: 1\u201330","journal-title":"Mach Learn Res"},{"key":"45_CR13","doi-asserted-by":"crossref","DOI":"10.7551\/mitpress\/1290.001.0001","volume-title":"Ant colony optimization","author":"M Dorigo","year":"2004","unstructured":"Dorigo M, St\u00fctzle T (2004) Ant colony optimization. MIT Press, Cambridge"},{"key":"45_CR14","unstructured":"Fayyad U, Piatetsky-Shapiro G, Smith P (1996) From data mining to knowledge discovery: an overview. In: Advances in knowledge discovery & data mining. MIT Press, Cambridge, pp 1\u201334"},{"key":"45_CR15","unstructured":"Freitas A, Parpinelli R, Lopes H (2008) Ant colony algorithms for data classification. In: Encyclopedia of Information Science and Technology, 2nd edn, vol 1, pp 154\u2013159"},{"key":"45_CR16","first-page":"2677","volume":"9","author":"S Garc\u00eda","year":"2008","unstructured":"Garc\u00eda S, Herrera F (2008) An extension on \u201cStatistical Comparisons of Classifiers over Multiple Data Sets\u201d for all pairwise comparisons. Mach Learn Res 9: 2677\u20132694","journal-title":"Mach Learn Res"},{"key":"45_CR17","doi-asserted-by":"crossref","unstructured":"Holden N, Freitas A (2008) Improving the performance of hierarchical classification with swarm intelligence. In: Proceedings of the 6th European Conference on evolutionary computation, machine learning and data mining in bioinformatics (EvoBio 2008), LNCS 973, pp 48\u201360","DOI":"10.1007\/978-3-540-78757-0_5"},{"issue":"3","key":"45_CR18","doi-asserted-by":"crossref","first-page":"259","DOI":"10.1007\/s00500-008-0321-0","volume":"13","author":"N Holden","year":"2009","unstructured":"Holden N, Freitas A (2009) Hierarchical classification of protein function with ensembles of rules and particle swarm optimisation. Soft Comput 13(3): 259\u2013272","journal-title":"Soft Comput"},{"key":"45_CR19","doi-asserted-by":"crossref","first-page":"429","DOI":"10.3233\/IDA-2002-6504","volume":"6","author":"N Japkowicz","year":"2002","unstructured":"Japkowicz N, Stephen S (2002) The class imbalance problem: a systematic study. Intell Data Analysis 6: 429\u2013450","journal-title":"Intell Data Analysis"},{"issue":"5","key":"45_CR20","doi-asserted-by":"crossref","first-page":"635","DOI":"10.1093\/bioinformatics\/btg036","volume":"19","author":"L Jensen","year":"2003","unstructured":"Jensen L, Gupta R, St\u00e6rfeldt H, Brunak S (2003) Prediction of human protein function according to gene ontology categories. Bioinformatics 19(5): 635\u2013642","journal-title":"Bioinformatics"},{"key":"45_CR21","unstructured":"Kiritchenko S, Matwin S, AFFamili (2005) Functional annotation of genes using hierarchical text categorization. In: BioLINK SIG: linking literature, information and knowledge for biology"},{"issue":"5","key":"45_CR22","doi-asserted-by":"crossref","first-page":"965","DOI":"10.1101\/gr.1144503","volume":"13","author":"A L\u00e6greid","year":"2003","unstructured":"L\u00e6greid A, Hvidsten T, Midelfart H, Komorowski J, Sandvik A (2003) Predicting gene ontology biological process from temporal gene expression patterns. Genome Res 13(5): 965\u2013979","journal-title":"Genome Res"},{"issue":"1","key":"45_CR23","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1007\/s12293-009-0007-x","volume":"1","author":"MH Lim","year":"2009","unstructured":"Lim MH, Gustafson S, Krasnogor N, Ong YS (2009) Editorial to the first issue. Memet Comput 1(1): 1\u20132","journal-title":"Memet Comput"},{"key":"45_CR24","volume-title":"Foundations of statistical natural language processing","author":"C Manning","year":"1999","unstructured":"Manning C, Schtze H (1999) Foundations of statistical natural language processing. MIT Press, Cambridge"},{"issue":"5","key":"45_CR25","doi-asserted-by":"crossref","first-page":"651","DOI":"10.1109\/TEVC.2006.890229","volume":"11","author":"D Martens","year":"2007","unstructured":"Martens D, Backer MD, Haesen R, Vanthienen J, Snoeck M, Baesens B (2007) Classification with ant colony optimization. IEEE Trans Evol Comput 11(5): 651\u2013665","journal-title":"IEEE Trans Evol Comput"},{"key":"45_CR26","doi-asserted-by":"crossref","unstructured":"Otero F, Freitas A, Johnson C (2008) cAnt-Miner: an ant colony classification algorithm to cope with continuous attributes. In: Ant colony optimization and swarm intelligence (Proc. ANTS 2008), LNCS 5217, Springer, pp 48\u201359","DOI":"10.1007\/978-3-540-87527-7_5"},{"key":"45_CR27","doi-asserted-by":"crossref","unstructured":"Otero F, Freitas A, Johnson C (2009) Handling continuous attributes in ant colony classification algorithms. In: Proceedings of the 2009 IEEE Symposium on computational intelligence in data mining (CIDM-2009), IEEE, pp 225\u2013231","DOI":"10.1109\/CIDM.2009.4938653"},{"key":"45_CR28","doi-asserted-by":"crossref","unstructured":"Otero F, Freitas A, Johnson C (2009) A hierarchical classification ant colony algorithm for predicting gene ontology terms. In: Proceedings of the 7th European Conference on evolutionary computation, machine learning and data mining in bioinformatics (EvoBio 2009), LNCS 5483, Springer, pp 68\u201379","DOI":"10.1007\/978-3-642-01184-9_7"},{"issue":"4","key":"45_CR29","doi-asserted-by":"crossref","first-page":"321","DOI":"10.1109\/TEVC.2002.802452","volume":"6","author":"R Parpinelli","year":"2002","unstructured":"Parpinelli R, Lopes H, Freitas A (2002) Data mining with an ant colony optimization algorithm. IEEE Trans Evol Comput 6(4): 321\u2013332","journal-title":"IEEE Trans Evol Comput"},{"key":"45_CR30","volume-title":"C4.5: programs for machine learning","author":"J Quinlan","year":"1993","unstructured":"Quinlan J (1993) C4.5: programs for machine learning. Morgan Kaufmann, San Mateo"},{"key":"45_CR31","unstructured":"Raedt HBLD, Ramon J (1998) Top\u2013down induction of clustering trees. In: Proceedings of the 15th International Conference on machine learning, ACM, pp 55\u201363"},{"issue":"3","key":"45_CR32","doi-asserted-by":"crossref","first-page":"205","DOI":"10.1145\/65943.65945","volume":"7","author":"V Raghavan","year":"1989","unstructured":"Raghavan V, Bollmann P, Jung G (1989) A critical investigation of recall and precision as measures of retrieval system performance. ACM Trans Info Syst 7(3): 205\u2013229","journal-title":"ACM Trans Info Syst"},{"key":"45_CR33","unstructured":"Rousu J, Saunders C, Szedmak S, Shawe-Taylor J (2006) Kernel-based learning of hierarchical multilabel classification models. J Mach Learn Res 1601\u20131626"},{"issue":"18","key":"45_CR34","doi-asserted-by":"crossref","first-page":"5539","DOI":"10.1093\/nar\/gkh894","volume":"32","author":"A Ruepp","year":"2004","unstructured":"Ruepp A, Zollner A, Maier D, Albermann K, Hani J, Mokrejs M, Tetko I, Guldener U, Mannhaupt G, Munsterkotter M, Mewes H (2004) The FunCat, a functional annotation scheme for systematic classification of proteins from whole genomes. Nucleic Acid Res 32(18): 5539\u20135545","journal-title":"Nucleic Acid Res"},{"key":"45_CR35","unstructured":"Secker A, Davies M, Freitas A, Timmis J, Mendao M, Flower D (2007) An experimental comparison of classification algorithms for the hierarchical prediction of protein function. In: Third UK knowledge discovery and data mining symposium (UKKDD-2007), pp 13\u201318"},{"key":"45_CR36","unstructured":"Sun A, Lim EP (2001) Hierarchical Text Classification and Evaluation. In: Proceedings of the 1th IEEE International Conference on data mining. IEEE Press, pp 521\u2013528"},{"key":"45_CR37","doi-asserted-by":"crossref","first-page":"1014","DOI":"10.1002\/asi.10298","volume":"54","author":"A Sun","year":"2003","unstructured":"Sun A, Lim EP, Ng WK (2003) Performance measurement framework for hierarchical text. J Am Soc Info Sci Technol 54: 1014\u20131028","journal-title":"J Am Soc Info Sci Technol"},{"issue":"2","key":"45_CR38","doi-asserted-by":"crossref","first-page":"185","DOI":"10.1007\/s10994-008-5077-3","volume":"73","author":"C Vens","year":"2008","unstructured":"Vens C, Struyf J, Schietgat L, D\u017eeroski S, Blockeel H (2008) Decision trees for hierarchical multi-label classification. Mach Learn 73(2): 185\u2013214","journal-title":"Mach Learn"},{"key":"45_CR39","unstructured":"Wang K, Zhou S, Liew S (1999) Building hierarchical classifiers Using Class Proximity. In: Proceedings of the 25th VLDB Conference. Morgan Kaufmann, pp 363\u2013374"}],"container-title":["Memetic Computing"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/s12293-010-0045-4.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/article\/10.1007\/s12293-010-0045-4\/fulltext.html","content-type":"text\/html","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/s12293-010-0045-4","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2019,6,2]],"date-time":"2019-06-02T03:45:53Z","timestamp":1559447153000},"score":1,"resource":{"primary":{"URL":"http:\/\/link.springer.com\/10.1007\/s12293-010-0045-4"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2010,6,22]]},"references-count":39,"journal-issue":{"issue":"3","published-print":{"date-parts":[[2010,9]]}},"alternative-id":["45"],"URL":"https:\/\/doi.org\/10.1007\/s12293-010-0045-4","relation":{},"ISSN":["1865-9284","1865-9292"],"issn-type":[{"value":"1865-9284","type":"print"},{"value":"1865-9292","type":"electronic"}],"subject":[],"published":{"date-parts":[[2010,6,22]]}}}