{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,11,4]],"date-time":"2025-11-04T23:12:22Z","timestamp":1762297942214},"reference-count":20,"publisher":"Springer Science and Business Media LLC","issue":"4","license":[{"start":{"date-parts":[[2012,12,1]],"date-time":"2012-12-01T00:00:00Z","timestamp":1354320000000},"content-version":"tdm","delay-in-days":0,"URL":"http:\/\/www.springer.com\/tdm"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["Interdiscip Sci Comput Life Sci"],"published-print":{"date-parts":[[2012,12]]},"DOI":"10.1007\/s12539-012-0134-9","type":"journal-article","created":{"date-parts":[[2013,1,25]],"date-time":"2013-01-25T01:41:58Z","timestamp":1359078118000},"page":"291-295","source":"Crossref","is-referenced-by-count":5,"title":["In silico analysis reveals the presence of a large number of Ankyrin repeat containing proteins in Ectocarpus siliculosus"],"prefix":"10.1007","volume":"4","author":[{"given":"Niaz","family":"Mahmood","sequence":"first","affiliation":[]},{"given":"Mahdi Muhammad","family":"Moosa","sequence":"additional","affiliation":[]},{"given":"Nahid","family":"Tamanna","sequence":"additional","affiliation":[]},{"given":"Suprovath Kumar","family":"Sarker","sequence":"additional","affiliation":[]},{"given":"Rifat Ara","family":"Najnin","sequence":"additional","affiliation":[]},{"given":"Salma Sultana","family":"Alam","sequence":"additional","affiliation":[]}],"member":"297","published-online":{"date-parts":[[2013,1,26]]},"reference":[{"key":"134_CR1","doi-asserted-by":"crossref","first-page":"369","DOI":"10.1093\/nar\/gkl198","volume":"34","author":"T.L. Bailey","year":"2006","unstructured":"Bailey, T.L., Williams, N., Misleh, C., Li, W.W. 2006. MEME: Discovering and analyzing DNA and protein sequence motifs. Nucl Acid Res 34, 369\u2013373.","journal-title":"Nucl Acid Res"},{"key":"134_CR2","doi-asserted-by":"crossref","first-page":"111","DOI":"10.1016\/j.gene.2004.06.006","volume":"340","author":"C. Becerra","year":"2004","unstructured":"Becerra, C., Jahrmann, T., Puigdomenech, P., Vicient, C.M. 2004. Ankyrin repeat-containing proteins in Arabidopsis: Characterization of a novel and abundant group of genes coding ankyrin-transmembrane proteins. Gene 340, 111\u2013121.","journal-title":"Gene"},{"key":"134_CR3","doi-asserted-by":"crossref","first-page":"651","DOI":"10.1038\/329651a0","volume":"329","author":"L. Breeden","year":"1987","unstructured":"Breeden, L., Nasmyth, K. 1987. Similarity between cell-cycle genes of budding yeast and fission yeast and the Notch gene of Drosophila. Nature 329, 651\u2013654.","journal-title":"Nature"},{"key":"134_CR4","doi-asserted-by":"crossref","first-page":"617","DOI":"10.1038\/nature09016","volume":"465","author":"J.M. Cock","year":"2010","unstructured":"Cock, J.M., Sterck, L., Rouz\u00e9, P., Scornet, D. et al. 2010. The Ectocarpus genome and the independent evolution of multicellularity in brown algae. Nature 465, 617\u2013621.","journal-title":"Nature"},{"key":"134_CR5","doi-asserted-by":"crossref","first-page":"1188","DOI":"10.1101\/gr.849004","volume":"14","author":"G.E. Crooks","year":"2004","unstructured":"Crooks, G.E., Hon, G., Chandonia, J.M., Brenner, S.E. 2004. WebLogo: A sequence logo generator. Genome Res 14, 1188\u20131190.","journal-title":"Genome Res"},{"key":"134_CR6","doi-asserted-by":"crossref","first-page":"207","DOI":"10.1007\/s11103-009-9518-6","volume":"71","author":"J. Huang","year":"2009","unstructured":"Huang, J., Zhao, X., Yu, H., Ouyang, Y., Wang, L., Zhang, Q. 2009. The ankyrin repeat gene family in rice: Genome-wide identification, classification and expression profiling. Plant Mol Biol 71, 207\u2013226.","journal-title":"Plant Mol Biol"},{"key":"134_CR7","doi-asserted-by":"crossref","first-page":"388","DOI":"10.1016\/S1360-1385(02)02309-9","volume":"7","author":"J.A. Jebanathirajah","year":"2002","unstructured":"Jebanathirajah, J.A., Peri, S., Pandey, A. 2002. Toll and interleukin-1 receptor (TIR) domain-containing proteins in plants: A genomic perspective. Trends Plant Sci 7, 388\u2013391.","journal-title":"Trends Plant Sci"},{"key":"134_CR8","doi-asserted-by":"crossref","first-page":"2947","DOI":"10.1093\/bioinformatics\/btm404","volume":"23","author":"M. Larkin","year":"2007","unstructured":"Larkin, M., Blackshields, G., Brown, N., Chenna, R., McGettigan, P., McWilliam, H., Valentin, F., Wallace, I., Wilm, A., Lopez, R. 2007. Clustal W and Clustal X version 2.0. Bioinformatics 23, 2947\u20132948.","journal-title":"Bioinformatics"},{"key":"134_CR9","doi-asserted-by":"crossref","first-page":"15168","DOI":"10.1021\/bi062188q","volume":"45","author":"J. Li","year":"2006","unstructured":"Li, J., Mahajan, A., Tsai, M.D. 2006. Ankyrin repeat: A unique motif mediating protein-protein interactions. Biochemistry 45, 15168\u201315178.","journal-title":"Biochemistry"},{"key":"134_CR10","doi-asserted-by":"crossref","first-page":"1","DOI":"10.4051\/ibc.2012.4.1.0001","volume":"4","author":"N. Mahmood","year":"2012","unstructured":"Mahmood, N., Moosa, M.M., Matin, S.A., Khan, H. 2012. Members of Ectocarpus siliculosus f-box family are subjected to differential selective forces. Interdiscip Bio Central 4, 1\u20137.","journal-title":"Interdiscip Bio Central"},{"key":"134_CR11","doi-asserted-by":"crossref","first-page":"151","DOI":"10.1006\/jmbi.1999.3136","volume":"293","author":"E.M. Marcotte","year":"1999","unstructured":"Marcotte, E.M., Pellegrini, M., Yeates, T.O., Eisenberg, D. 1999. A census of protein repeats. J Mol Biol 293, 151\u2013160.","journal-title":"J Mol Biol"},{"key":"134_CR12","doi-asserted-by":"crossref","first-page":"1435","DOI":"10.1110\/ps.03554604","volume":"13","author":"L.K. Mosavi","year":"2004","unstructured":"Mosavi, L.K., Cammett, T.J., Desrosiers, D.C., Peng, Z.Y. 2004. The ankyrin repeat as molecular architecture for protein recognition. Protein Sci 13, 1435\u20131448.","journal-title":"Protein Sci"},{"key":"134_CR13","doi-asserted-by":"crossref","first-page":"16029","DOI":"10.1073\/pnas.252537899","volume":"99","author":"L.K. Mosavi","year":"2002","unstructured":"Mosavi, L.K., Minor, D.L., Peng, Z.Y. 2002. Consensus-derived structural determinants of the ankyrin repeat motif. Proc Natl Acad Sci 99, 16029\u201316034.","journal-title":"Proc Natl Acad Sci"},{"key":"134_CR14","first-page":"406","volume":"4","author":"N. Saitou","year":"1987","unstructured":"Saitou, N., Nei, M. 1987. The neighbor-joining method: A new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406\u2013425.","journal-title":"Mol Biol Evol"},{"key":"134_CR15","doi-asserted-by":"crossref","first-page":"311","DOI":"10.1016\/S0968-0004(99)01426-7","volume":"24","author":"S.G. Sedgwick","year":"1999","unstructured":"Sedgwick, S.G., Smerdon, S.J. 1999. The ankyrin repeat: A diversity of interactions on a common structural framework. Trends Biochem Sci 24, 311\u2013316.","journal-title":"Trends Biochem Sci"},{"key":"134_CR16","doi-asserted-by":"crossref","first-page":"952","DOI":"10.5483\/BMBRep.2007.40.6.952","volume":"40","author":"E.S. Seong","year":"2007","unstructured":"Seong, E.S., Choi, D., Cho, H.S., Lim, C.K., Cho, H.J., Wang, M.H. 2007. Characterization of a stressresponsive ankyrin repeat-containing zinc finger protein of Capsicum annuum (CaKR1). J Biochem Mol Biol 40, 952\u2013958.","journal-title":"J Biochem Mol Biol"},{"key":"134_CR17","doi-asserted-by":"crossref","first-page":"1596","DOI":"10.1093\/molbev\/msm092","volume":"24","author":"K. Tamura","year":"2007","unstructured":"Tamura, K., Dudley, J., Nei, M., Kumar, S. 2007. MEGA4: Molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol Biol Evol 24, 1596\u20131599.","journal-title":"Mol Biol Evol"},{"key":"134_CR18","doi-asserted-by":"crossref","first-page":"3635","DOI":"10.1105\/tpc.106.046730","volume":"18","author":"Y.S. Wang","year":"2006","unstructured":"Wang, Y.S., Pi, L.Y., Chen, X., Chakrabarty, P.K., Jiang, J., De Leon, A.L., Liu, G.Z., Li, L., Benny, U., Oard, J. 2006. Rice XA21 binding protein 3 is a ubiquitin ligase required for full Xa21-mediated disease resistance. The Plant Cell 18, 3635\u20133646.","journal-title":"The Plant Cell"},{"key":"134_CR19","doi-asserted-by":"crossref","first-page":"193","DOI":"10.1046\/j.0960-7412.2001.01205.x","volume":"29","author":"J. Yan","year":"2002","unstructured":"Yan, J., Wang, J., Zhang, H. 2002. An ankyrin repeatcontaining protein plays a role in both disease resistance and antioxidation metabolism. Plant J 29, 193\u2013202.","journal-title":"Plant J"},{"key":"134_CR20","doi-asserted-by":"crossref","first-page":"1575","DOI":"10.1105\/tpc.4.12.1575","volume":"4","author":"H. Zhang","year":"1992","unstructured":"Zhang, H., Scheirer, D.C., Fowle, W.H., Goodman, H.M. 1992. Expression of antisense or sense RNA of an ankyrin repeat-containing gene blocks chloroplast differentiation in arabidopsis. The Plant Cell 4, 1575\u20131588.","journal-title":"The Plant Cell"}],"container-title":["Interdisciplinary Sciences: Computational Life Sciences"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/s12539-012-0134-9.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/article\/10.1007\/s12539-012-0134-9\/fulltext.html","content-type":"text\/html","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/s12539-012-0134-9","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2019,6,2]],"date-time":"2019-06-02T12:16:07Z","timestamp":1559477767000},"score":1,"resource":{"primary":{"URL":"http:\/\/link.springer.com\/10.1007\/s12539-012-0134-9"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2012,12]]},"references-count":20,"journal-issue":{"issue":"4","published-print":{"date-parts":[[2012,12]]}},"alternative-id":["134"],"URL":"https:\/\/doi.org\/10.1007\/s12539-012-0134-9","relation":{},"ISSN":["1913-2751","1867-1462"],"issn-type":[{"value":"1913-2751","type":"print"},{"value":"1867-1462","type":"electronic"}],"subject":[],"published":{"date-parts":[[2012,12]]}}}