{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,2,21]],"date-time":"2025-02-21T17:51:35Z","timestamp":1740160295728,"version":"3.37.3"},"reference-count":46,"publisher":"Springer Science and Business Media LLC","issue":"4","license":[{"start":{"date-parts":[[2016,1,11]],"date-time":"2016-01-11T00:00:00Z","timestamp":1452470400000},"content-version":"tdm","delay-in-days":0,"URL":"http:\/\/www.springer.com\/tdm"}],"funder":[{"DOI":"10.13039\/501100002858","name":"China Postdoctoral Science Foundation","doi-asserted-by":"publisher","award":["2015M572361, 61503252, 61170040"],"award-info":[{"award-number":["2015M572361, 61503252, 61170040"]}],"id":[{"id":"10.13039\/501100002858","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":["link.springer.com"],"crossmark-restriction":false},"short-container-title":["Int. J. Mach. Learn. &amp; Cyber."],"published-print":{"date-parts":[[2017,8]]},"DOI":"10.1007\/s13042-015-0486-7","type":"journal-article","created":{"date-parts":[[2016,1,11]],"date-time":"2016-01-11T14:51:10Z","timestamp":1452523870000},"page":"1157-1165","update-policy":"https:\/\/doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":9,"title":["Fuzzy soft subspace clustering method for gene co-expression network analysis"],"prefix":"10.1007","volume":"8","author":[{"given":"Qiang","family":"Wang","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Guoliang","family":"Chen","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"297","published-online":{"date-parts":[[2016,1,11]]},"reference":[{"key":"486_CR1","doi-asserted-by":"crossref","first-page":"529","DOI":"10.1098\/rsta.1955.0005","volume":"A247","author":"G Eason","year":"1955","unstructured":"Eason G, Noble B, Sneddon IN (1955) On certain integrals of Lipschitz-Hankel type involving products of Bessel functions. Phil Trans R Soc Lond A247:529\u2013551","journal-title":"Phil Trans R Soc Lond"},{"issue":"8","key":"486_CR2","doi-asserted-by":"crossref","first-page":"707","DOI":"10.1093\/bioinformatics\/16.8.707","volume":"16","author":"P D\u2019haeseleer","year":"2000","unstructured":"D\u2019haeseleer P, Liang S, Somogyi R (2000) Genetic network inference: from co-expression clustering to reverse engineering. Bioinfromatics 16(8):707\u2013726","journal-title":"Bioinfromatics"},{"issue":"8","key":"486_CR3","doi-asserted-by":"crossref","first-page":"e1000117","DOI":"10.1371\/journal.pcbi.1000117","volume":"4","author":"S Horvath","year":"2008","unstructured":"Horvath S, Dong J (2008) Geometric Interpretation of gene coexpression network analysis. PLoS Comput Biol 4(8):e1000117","journal-title":"PLoS Comput Biol"},{"key":"486_CR4","doi-asserted-by":"crossref","first-page":"101","DOI":"10.1038\/nrg1272","volume":"5","author":"AL Barabasi","year":"2004","unstructured":"Barabasi AL, Oltvai ZN (2004) Network biology: understanding the cells functional organization. Nat Rev Genet 5:101\u2013113","journal-title":"Nat Rev Genet"},{"key":"486_CR5","doi-asserted-by":"crossref","first-page":"1298","DOI":"10.1101\/gr.3847105","volume":"15","author":"AA Petti","year":"2005","unstructured":"Petti AA, Church GM (2005) A network of transcriptionally coordinated functional modules in Saccharomyces cerevisiae. Genome Res 15:1298\u20131306","journal-title":"Genome Res"},{"issue":"25","key":"486_CR6","doi-asserted-by":"crossref","first-page":"14863","DOI":"10.1073\/pnas.95.25.14863","volume":"95","author":"MB Eisen","year":"1998","unstructured":"Eisen MB, Spellman PT, Brown PO, Botstein D (1998) Cluster analysis and display of genome-wide expression patterns. PNAS 95(25):14863\u201314868","journal-title":"PNAS"},{"key":"486_CR7","doi-asserted-by":"crossref","first-page":"15","DOI":"10.1038\/ng0103-15","volume":"33","author":"H Ge","year":"2003","unstructured":"Ge H, Liu Z, Church GM, Vidal M (2003) Correlation between transcriptome and interactome mapping data from Saccharomyces cerevisiae. Nat Genet 33:15\u201316","journal-title":"Nat Genet"},{"issue":"24","key":"486_CR8","first-page":"1","volume":"1","author":"J Dong","year":"2007","unstructured":"Dong J, Horvath S (2007) Understanding network concepts in modules. BMC Syst Biol 1(24):1\u201320","journal-title":"BMC Syst Biol"},{"unstructured":"Mjolsness E, Mann T, Casta\u00f1o R, Wold B (2000) From coexpression to coregulation: an approach to inferring transcriptional regulation among gene classes from large-scale expression data. In: Solla SA, Leen TK, Muller KR (eds) Advances in Neural Information Processing Systems 12. MIT Press, Cambridge, MA, pp 928\u2013934","key":"486_CR9"},{"key":"486_CR10","doi-asserted-by":"crossref","first-page":"1851","DOI":"10.1242\/dev.124.10.1851","volume":"124","author":"MI Arnone","year":"1997","unstructured":"Arnone MI, Davidson EH (1997) he hardwiring of development: organization and function of genomic regulatory systems. Development 124:1851\u20131864","journal-title":"Development"},{"issue":"4","key":"486_CR11","doi-asserted-by":"crossref","first-page":"521","DOI":"10.1016\/S0092-8674(00)80126-9","volume":"86","author":"GL Miklos","year":"1996","unstructured":"Miklos GL, Rubin GM (1996) The role of the genome project in determining gene function: insights from model organisms. Cell 86(4):521\u2013529","journal-title":"Cell"},{"key":"486_CR12","first-page":"100","volume":"2005","author":"L Candillier","year":"2005","unstructured":"Candillier L, Tellier I, Torre F, Bousquet O (2005) SSC: statistical subspace clustering. MLDM 2005:100\u2013109","journal-title":"MLDM"},{"doi-asserted-by":"crossref","unstructured":"Ding C, Li T (2007) Adaptive dimension reduction using discriminant analysis and k-means clustering. In: Proceedings of the 24th international conference on machine learning","key":"486_CR13","DOI":"10.1145\/1273496.1273562"},{"doi-asserted-by":"crossref","unstructured":"Kailing K, Kriegel HP, Kr\u00f6ger P (2004) Density-connected subspace clustering for high-dimensional data. In: Proceedings of 4th SIAM international conference on data mining, pp 246\u2013257","key":"486_CR14","DOI":"10.1137\/1.9781611972740.23"},{"key":"486_CR15","doi-asserted-by":"crossref","first-page":"24","DOI":"10.1109\/TCBB.2004.2","volume":"1","author":"SC Madeira","year":"2004","unstructured":"Madeira SC, Oliveira AL (2004) Biclustering algorithms for biological data analysis: a survey. IEEE ACM Trans Comput Biol Bioinf 1:24\u201345","journal-title":"IEEE ACM Trans Comput Biol Bioinf"},{"issue":"1","key":"486_CR16","doi-asserted-by":"crossref","first-page":"90","DOI":"10.1145\/1007730.1007731","volume":"6","author":"L Parsons","year":"2004","unstructured":"Parsons L, Haque E, Liu H (2004) Subspace clustering for high dimensional data: a review. SIGKDD Explor 6(1):90\u2013105","journal-title":"SIGKDD Explor"},{"issue":"9","key":"486_CR17","doi-asserted-by":"crossref","first-page":"1122","DOI":"10.1093\/bioinformatics\/btl060","volume":"22","author":"A Prelic","year":"2006","unstructured":"Prelic A, Prelic S, Zimmermann P, Wille A, B\u00fchlmann P, Gruissem W, Hennig L, Thiele L, Zitzler E (2006) A systematic comparison and evaluation of biclustering methods for gene expression data. Bioinformatics 22(9):1122\u20131129","journal-title":"Bioinformatics"},{"unstructured":"Wang H, Chu F, Fan W, Yu PS, Pei J (2004) A fast algorithm for subspace clustering by pattern similarity. In: SSDBM, pp 51\u201360","key":"486_CR18"},{"key":"486_CR19","doi-asserted-by":"crossref","DOI":"10.1007\/978-1-4757-0450-1","volume-title":"Pattern recognition with fuzzy objective function algorithms","author":"JC Bezdek","year":"1981","unstructured":"Bezdek JC (1981) Pattern recognition with fuzzy objective function algorithms. Plenum, New York"},{"key":"486_CR20","doi-asserted-by":"crossref","first-page":"9","DOI":"10.1152\/physiolgenomics.2000.3.1.9","volume":"3","author":"PJ Woolf","year":"2000","unstructured":"Woolf PJ, Wang Y (2000) A fuzzy logic approach to analyzing gene expression data. Physiol Genomics 3:9\u201315","journal-title":"Physiol Genomics"},{"key":"486_CR21","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1186\/gb-2002-3-11-research0059","volume":"3","author":"AP Gasch","year":"2002","unstructured":"Gasch AP, Eisen MB (2002) Exploring the conditional coregulation of yeast gene expression through fuzzy K-means clustering. Genome Biol 3:1\u201322","journal-title":"Genome Biol"},{"issue":"8","key":"486_CR22","doi-asserted-by":"crossref","first-page":"973","DOI":"10.1093\/bioinformatics\/btg119","volume":"19","author":"D Demb\u00e9l\u00e9","year":"2003","unstructured":"Demb\u00e9l\u00e9 D, Kastner P (2003) Fuzzy C-means method for clustering microarray data. Bioinfromatics 19(8):973\u2013980","journal-title":"Bioinfromatics"},{"doi-asserted-by":"crossref","unstructured":"Wang Q, Ye YM, Huang ZX (2008) Fuzzy k-means with variable weighting in high dimensional data analysis. In: The ninth international conference on web-age information management, pp 365\u2013372","key":"486_CR23","DOI":"10.1109\/WAIM.2008.50"},{"unstructured":"Chen Y, Church GM (2000) Biclustering of expression data. ISMB, pp 93\u2013103","key":"486_CR24"},{"issue":"22","key":"486_CR25","doi-asserted-by":"crossref","first-page":"12079","DOI":"10.1073\/pnas.210134797","volume":"97","author":"G Getz","year":"2002","unstructured":"Getz G, Levine E, Domany E (2002) Coupled two-way clustering analysis of gene microarray data. Proc Natl Acad Sci USA 97(22):12079\u201312084","journal-title":"Proc Natl Acad Sci USA"},{"issue":"1","key":"486_CR26","first-page":"61","volume":"12","author":"L Lazzeroni","year":"2002","unstructured":"Lazzeroni L, Owen A (2002) Plaid models for gene expression data. Stat Sin 12(1):61\u201386","journal-title":"Stat Sin"},{"key":"486_CR27","first-page":"517","volume":"2002","author":"J Yang","year":"2002","unstructured":"Yang J, Wang W, Wang H, Yu PS (2002) delta-cluster: capturing subspace correlation in a large data set. ICDE 2002:517\u2013528","journal-title":"ICDE"},{"issue":"3","key":"486_CR28","doi-asserted-by":"crossref","first-page":"385","DOI":"10.1109\/TCBB.2007.70268","volume":"5","author":"H Cho","year":"2008","unstructured":"Cho H, Dhillon IS (2008) Coclustering of human cancer microarrays using minimum sum-squared residue coclustering. IEEE ACM Trans Comput Biol Bioinf 5(3):385\u2013400","journal-title":"IEEE ACM Trans Comput Biol Bioinf"},{"issue":"2","key":"486_CR29","doi-asserted-by":"crossref","first-page":"244","DOI":"10.1109\/TCBB.2008.15","volume":"6","author":"SS Jahangheer","year":"2009","unstructured":"Jahangheer SS, Mohammed Y (2009) Fuzzy-adaptive-subspace-iteration-based two-way clustering of microarray data. IEEE ACM Trans Comput Biol Bioinf 6(2):244\u2013259","journal-title":"IEEE ACM Trans Comput Biol Bioinf"},{"key":"486_CR30","doi-asserted-by":"crossref","first-page":"57","DOI":"10.1007\/BF02294206","volume":"49","author":"WS Desarbo","year":"1984","unstructured":"Desarbo WS, Carroll JD, Clark LA, Green PE (1984) Synthesized clustering: a method for amalgamating clustering bases with differential weighting variables. Psychometrika 49:57\u201378","journal-title":"Psychometrika"},{"issue":"4","key":"486_CR31","doi-asserted-by":"crossref","first-page":"815","DOI":"10.1111\/j.1467-9868.2004.02059.x","volume":"66","author":"JH Friedman","year":"2004","unstructured":"Friedman JH, Meulman JJ (2004) Clustering objects on subsets of attributes. J Roy Stat Soc Ser B\u00a066(4):815-849","journal-title":"J Roy Stat Soc Ser B"},{"issue":"5","key":"486_CR32","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1109\/TPAMI.2005.95","volume":"27","author":"JZ Huang","year":"2005","unstructured":"Huang JZ, Ng MK, Rong H, Li Z (2005) Automated variable weighting in k-means type clustering. IEEE Trans PAMI 27(5):1\u201312","journal-title":"IEEE Trans PAMI"},{"issue":"8","key":"486_CR33","first-page":"1","volume":"19","author":"L Jing","year":"2007","unstructured":"Jing L, Ng MK, Huang JZ (2007) An entropy weighting k-means algorithm for subspace clustering of high-dimensional sparse data. IEEE TKDE 19(8):1\u201316","journal-title":"IEEE TKDE"},{"issue":"2","key":"486_CR34","doi-asserted-by":"crossref","first-page":"103","DOI":"10.1109\/4235.771164","volume":"3","author":"LO Hall","year":"1999","unstructured":"Hall LO, Ozyurt IB, Bezdek JC (1999) Clustering with a genetically optimized approach. IEEE Trans Evol Comput 3(2):103\u2013112","journal-title":"IEEE Trans Evol Comput"},{"doi-asserted-by":"crossref","unstructured":"Nasser S, Alkhaldi R, Vert G (2006) A modified fuzzy K-means clustering using expectation maximization. In: IEEE international conference on fuzzy systems Sheraton Vancouver Wall Centre Hotel, Vancouver, BC, Canada, vol 86, no 4, pp 16\u201321, July 2006","key":"486_CR35","DOI":"10.1109\/FUZZY.2006.1681719"},{"issue":"12","key":"486_CR36","doi-asserted-by":"crossref","first-page":"1905","DOI":"10.1093\/bioinformatics\/bth177","volume":"20","author":"Y Qu","year":"2004","unstructured":"Qu Y, Xu S (2004) Supervised cluster analysis for microarray data based on multivariate Gaussian mixture. Bioinformatics 20(12):1905\u20131913","journal-title":"Bioinformatics"},{"issue":"10","key":"486_CR37","doi-asserted-by":"crossref","first-page":"977","DOI":"10.1093\/bioinformatics\/17.10.977","volume":"17","author":"KY Yeung","year":"2001","unstructured":"Yeung KY, Fraley C, Murua A, Raftery E, Ruzzo WL (2001) Model-based clustering and data transformations for gene expression data. Bioinformatics 17(10):977\u2013987","journal-title":"Bioinformatics"},{"issue":"1","key":"486_CR38","doi-asserted-by":"crossref","first-page":"1","DOI":"10.2202\/1544-6115.1128","volume":"4","author":"B Zhang","year":"2005","unstructured":"Zhang B, Horvath S (2005) General framework for weighted gene co-expression network analysis. Stat Appl Genet Mol Biol 4(1):1\u201345","journal-title":"Stat Appl Genet Mol Biol"},{"key":"486_CR39","doi-asserted-by":"crossref","first-page":"65","DOI":"10.1016\/S1097-2765(00)80114-8","volume":"2","author":"RJ Cho","year":"1998","unstructured":"Cho RJ, Campbell M, Winzeler E, Steinmets L, Conway A, Wodicka L, Wolfsberg T, Gabrielian A, Landsman D, Lockhart D, Davis R (1998) A genomi-wide transcriptional analysis of the mitotic cell-cycle. Mol Cell 2:65\u201373","journal-title":"Mol Cell"},{"issue":"Suppl 15","key":"486_CR40","doi-asserted-by":"crossref","first-page":"S9","DOI":"10.1186\/1471-2105-15-S15-S9","volume":"15","author":"ZH You","year":"2014","unstructured":"You ZH, Zhu L, Zheng CH, Yu HJ, Deng SP, Ji Z (2014) Prediction of protein-protein interactions from amino acid sequences using a novel multi-scale continuous and discontinuous feature set. BMC Bioinform 15(Suppl 15):S9","journal-title":"BMC Bioinform"},{"key":"486_CR41","doi-asserted-by":"crossref","first-page":"37","DOI":"10.1016\/j.neucom.2014.05.072","volume":"145","author":"ZH You","year":"2014","unstructured":"You ZH, Yu JZ, Zhu L, Li S, Wen ZK (2014) A Mapreduce based parallel SVM for large scale predicting protein-protein interactions. Neurocomputing 145:37\u201343","journal-title":"Neurocomputing"},{"issue":"Suppl 8","key":"486_CR42","doi-asserted-by":"crossref","first-page":"S10","DOI":"10.1186\/1471-2105-14-S8-S10","volume":"14","author":"ZH You","year":"2013","unstructured":"You ZH, Lei YK, Zhu L, Xia JF, Wang B (2013) Prediction of protein-protein interactions from amino acid sequences with ensemble extreme learning machines and principal component analysis. BMC Bioinform 14(Suppl 8):S10","journal-title":"BMC Bioinform"},{"issue":"4","key":"486_CR43","doi-asserted-by":"crossref","first-page":"243","DOI":"10.1016\/j.compbiolchem.2008.03.020","volume":"32","author":"Z Du","year":"2008","unstructured":"Du Z, Wang Y, Ji Z (2008) PK-means: a new algorithm for gene clustering. Comput Biol Chem 32(4):243\u2013247","journal-title":"Comput Biol Chem"},{"issue":"3","key":"486_CR44","doi-asserted-by":"crossref","first-page":"1185","DOI":"10.3233\/IFS-151729","volume":"29","author":"XZ Wang","year":"2015","unstructured":"Wang XZ, Ashfaq RAR, Fu AM (2015) Fuzziness based sample categorization for classifier performance improvement. J Intell Fuzzy Syst 29(3):1185\u20131196","journal-title":"J Intell Fuzzy Syst"},{"issue":"5","key":"486_CR45","doi-asserted-by":"crossref","first-page":"1638","DOI":"10.1109\/TFUZZ.2014.2371479","volume":"23","author":"XZ Wang","year":"2015","unstructured":"Wang XZ, Xing HJ, Li Y, Hua Q, Dong CR, Pedrycz W (2015) A study on relationship between generalization abilities and fuzziness of base classifiers in ensemble learning. IEEE Trans Fuzzy Syst 23(5):1638\u20131654","journal-title":"IEEE Trans Fuzzy Syst"},{"issue":"5","key":"486_CR46","doi-asserted-by":"crossref","first-page":"2329","DOI":"10.3233\/IFS-141516","volume":"28","author":"XZ Wang","year":"2015","unstructured":"Wang XZ (2015) Uncertainty in learning from big data-editorial. J Intell Fuzzy Syst 28(5):2329\u20132330","journal-title":"J Intell Fuzzy Syst"}],"container-title":["International Journal of Machine Learning and Cybernetics"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/link.springer.com\/article\/10.1007\/s13042-015-0486-7\/fulltext.html","content-type":"text\/html","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/s13042-015-0486-7.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/s13042-015-0486-7","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"},{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/s13042-015-0486-7.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2022,6,1]],"date-time":"2022-06-01T09:52:28Z","timestamp":1654077148000},"score":1,"resource":{"primary":{"URL":"http:\/\/link.springer.com\/10.1007\/s13042-015-0486-7"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2016,1,11]]},"references-count":46,"journal-issue":{"issue":"4","published-print":{"date-parts":[[2017,8]]}},"alternative-id":["486"],"URL":"https:\/\/doi.org\/10.1007\/s13042-015-0486-7","relation":{},"ISSN":["1868-8071","1868-808X"],"issn-type":[{"type":"print","value":"1868-8071"},{"type":"electronic","value":"1868-808X"}],"subject":[],"published":{"date-parts":[[2016,1,11]]}}}