{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,3,24]],"date-time":"2026-03-24T01:15:43Z","timestamp":1774314943067,"version":"3.50.1"},"reference-count":22,"publisher":"Springer Science and Business Media LLC","issue":"2","license":[{"start":{"date-parts":[[2024,6,7]],"date-time":"2024-06-07T00:00:00Z","timestamp":1717718400000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.springernature.com\/gp\/researchers\/text-and-data-mining"},{"start":{"date-parts":[[2024,6,7]],"date-time":"2024-06-07T00:00:00Z","timestamp":1717718400000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/www.springernature.com\/gp\/researchers\/text-and-data-mining"}],"content-domain":{"domain":["link.springer.com"],"crossmark-restriction":false},"short-container-title":["Datenbank Spektrum"],"published-print":{"date-parts":[[2024,7]]},"DOI":"10.1007\/s13222-024-00474-5","type":"journal-article","created":{"date-parts":[[2024,6,7]],"date-time":"2024-06-07T15:01:48Z","timestamp":1717772508000},"page":"129-137","update-policy":"https:\/\/doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":4,"title":["BiodivPortal: Enabling Semantic Services for Biodiversity within the German National Research Data Infrastructure"],"prefix":"10.1007","volume":"24","author":[{"ORCID":"https:\/\/orcid.org\/0000-0002-6762-6417","authenticated-orcid":false,"given":"Naouel","family":"Karam","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Jan","family":"Fillies","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Clement","family":"Jonquet","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Syphax","family":"Bouazzouni","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Felicitas","family":"L\u00f6ffler","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Franziska","family":"Zander","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Birgitta","family":"K\u00f6nig-Ries","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Anton","family":"G\u00fcntsch","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Michael","family":"Diepenbroek","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Adrian","family":"Paschke","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"297","published-online":{"date-parts":[[2024,6,7]]},"reference":[{"key":"474_CR1","first-page":"67","volume-title":"Proceedings of the 17th international workshop on ontology matching (OM 2022) co-located with the 21th international semantic web conference (ISWC 2022), Hangzhou, China, held as a\u00a0virtual conference, october 23, 2022, CEUR workshop proceedings","author":"A Algergawy","year":"2022","unstructured":"Algergawy A, Karam N, Laadhar A et al (2022) Too big to match: a\u00a0strategy around matching tasks for large taxonomies. In: Shvaiko P, Euzenat J, Jim\u00e9nez-Ruiz E, al (eds) Proceedings of the 17th international workshop on ontology matching (OM 2022) co-located with the 21th international semantic web conference (ISWC 2022), Hangzhou, China, held as a\u00a0virtual conference, october 23, 2022, CEUR workshop proceedings, vol 3324. CEUR-WS.org, pp 67\u201372"},{"key":"474_CR2","volume-title":"Proc. International conference on dublin core and metadata applications","author":"C Alves","year":"2018","unstructured":"Alves C, Castro JA, Ribeiro C et al (2018) Research data management in the field of ecology: an overview. In: Proc. International conference on dublin core and metadata applications"},{"key":"474_CR3","doi-asserted-by":"publisher","unstructured":"Buttigieg PL, Morrison N, Smith B et al (2013) The environment ontology: contextualising biological and biomedical entities. J Biomed Sem 4(1):43. 11 Dec. 2013, https:\/\/doi.org\/10.1186\/2041-1480-4-43","DOI":"10.1186\/2041-1480-4-43"},{"key":"474_CR4","volume-title":"1st conference on research data infrastructure \u2013 connecting communities, coRDI 2023, Karlsruhe, Germany, september 12\u201314, 2023","author":"MA Dieckmann","year":"2023","unstructured":"Dieckmann MA, Beyvers S, Hochmuth J et al (2023) The aruna object storage A distributed multi cloud object storage system for scientific data management. In: Sure-Vetter Y, Goble CA (eds) 1st conference on research data infrastructure \u2013 connecting communities, coRDI 2023, Karlsruhe, Germany, september 12\u201314, 2023. TIB Open Publishing,"},{"key":"474_CR5","first-page":"1711","volume-title":"Informatik 2014","author":"M Diepenbroek","year":"2014","unstructured":"Diepenbroek M, Gl\u00f6ckner FO, Grobe P et al (2014) Towards an integrated biodiversity and ecological research data management and archiving platform: the german federation for the curation of biological data (gfbio). In: Informatik 2014. Gesellschaft f\u00fcr Informatik e.V, Bonn, pp 1711\u20131721"},{"key":"474_CR6","doi-asserted-by":"publisher","first-page":"177","DOI":"10.1016\/j.jbiotec.2017.07.016","volume":"261","author":"M Diepenbroek","year":"2017","unstructured":"Diepenbroek M, Schindler U, Huber R et al (2017) Terminology supported archiving and publication of environmental science data in pangaea. J\u00a0Biotechnol 261:177\u2013186 (Bioinformatics Solutions for Big Data Analysis in Life Sciences presented by the German Network for Bioinformatics Infrastructure)","journal-title":"J Biotechnol"},{"key":"474_CR7","volume-title":"1st conference on research data infrastructure \u2013 connecting communities, coRDI 2023, Karlsruhe, Germany, September 12\u201314, 2023","author":"M Diepenbroek","year":"2023","unstructured":"Diepenbroek M, Kostadinov I, Seeger B et al (2023) Towards a\u00a0research data commons in the german national research data infrastructure NFDI: vision, governance, architecture. In: Sure-Vetter Y, Goble CA (eds) 1st conference on research data infrastructure \u2013 connecting communities, coRDI 2023, Karlsruhe, Germany, September 12\u201314, 2023. TIB Open Publishing,"},{"key":"474_CR8","doi-asserted-by":"publisher","first-page":"D136","DOI":"10.1093\/nar\/gkr1178","volume":"40","author":"S Federhen","year":"2011","unstructured":"Federhen S (2011) The NCBI taxonomy database. Nucleic Acids Res 40:D136\u2013D143 (Database issue)","journal-title":"Nucleic Acids Res"},{"key":"474_CR9","doi-asserted-by":"publisher","unstructured":"Gkoutos GV, Green ECJ, Mallon AM et al (2005) Using ontologies to describe mouse phenotypes. Geno Bio 6(1):R8. https:\/\/doi.org\/10.1186\/gb-2004-6-1-r8","DOI":"10.1186\/gb-2004-6-1-r8"},{"key":"474_CR10","volume-title":"NFDI4biodiversity \u2013 a\u00a0consortium for the national research data infrastructure (NFDI)","author":"FO Gl\u00f6ckner","year":"2020","unstructured":"Gl\u00f6ckner FO, Diepenbroek M, Felden J et al (2020) NFDI4biodiversity \u2013 a\u00a0consortium for the national research data infrastructure (NFDI)"},{"key":"474_CR11","doi-asserted-by":"publisher","unstructured":"Hoehndorf R, Alshahrani M, Gkoutos GV et al (2016) The flora phenotype ontology (FLOPO): tool for integrating morphological traits and phenotypes of vascular plants. J Biomed Sem  7:65. https:\/\/doi.org\/10.1186\/s13326-016-0107-8","DOI":"10.1186\/s13326-016-0107-8"},{"key":"474_CR12","doi-asserted-by":"publisher","first-page":"101245","DOI":"10.1016\/j.ecoinf.2021.101245","volume":"61","author":"R Huber","year":"2021","unstructured":"Huber R, D\u2019Onofrio C, Devaraju A et al (2021) Integrating data and analysis technologies within leading environmental research infrastructures: challenges and approaches. Ecol Informatics 61:101245","journal-title":"Ecol Informatics"},{"issue":"4","key":"474_CR13","doi-asserted-by":"publisher","first-page":"771","DOI":"10.1080\/11263504.2012.740085","volume":"146","author":"J Holetschek","year":"2012","unstructured":"Holetschek J, Dr\u00f6ge AGG, Berendsohn WG (2012) The abcd of primary biodiversity data access. Plant Biosyst 146(4):771\u2013779","journal-title":"Plant Biosyst"},{"key":"474_CR14","volume-title":"3rd workshop on metadata and research (objects) management for linked open science \u2013 DamaLOS 2023, co-located with ESWC 2023, Hersonissos, Greece, May 29, 2023","author":"C Jonquet","year":"2023","unstructured":"Jonquet C, Poveda-Villal\u00f3n M (2023) About versioning ontologies or any digital objects with clear semantics. In: Castro LJ, Dess\u00ec D, Dierkes J et al (eds) 3rd workshop on metadata and research (objects) management for linked open science \u2013 DamaLOS 2023, co-located with ESWC 2023, Hersonissos, Greece, May 29, 2023"},{"key":"474_CR15","series-title":"Lecture notes in computer science","doi-asserted-by":"crossref","first-page":"38","DOI":"10.1007\/978-3-031-47243-5_3","volume-title":"The semantic web \u2013 ISWC 2023 \u2013 22nd international semantic web conference, Athens, Greece, november 6\u201310, 2023, proceedings, part II","author":"C Jonquet","year":"2023","unstructured":"Jonquet C, Graybeal J, Bouazzouni S et al (2023) Ontology repositories and semantic artefact catalogues with the ontoportal technology. In: Payne TR, Presutti V, Qi G et al (eds) The semantic web \u2013 ISWC 2023 \u2013 22nd international semantic web conference, Athens, Greece, november 6\u201310, 2023, proceedings, part II. Lecture notes in computer science, vol 14266. Springer, pp 38\u201358"},{"issue":"3","key":"474_CR16","doi-asserted-by":"publisher","first-page":"195","DOI":"10.1007\/s13222-016-0231-8","volume":"16","author":"N Karam","year":"2016","unstructured":"Karam N, M\u00fcller-Birn C, Gleisberg M et al (2016) A\u00a0terminology service supporting semantic annotation, integration, discovery and analysis of interdisciplinary research data. Datenbank Spektrum 16(3):195\u2013205","journal-title":"Datenbank Spektrum"},{"key":"474_CR17","doi-asserted-by":"publisher","first-page":"e9","DOI":"10.1017\/S0269888920000132","volume":"35","author":"N Karam","year":"2020","unstructured":"Karam N, Khiat A, Algergawy A et al (2020) Matching biodiversity and ecology ontologies: challenges and evaluation results. Knowl Eng Rev 35:e9","journal-title":"Knowl Eng Rev"},{"key":"474_CR18","series-title":"CEUR Workshop Proceedings","volume-title":"Proceedings of the joint ontology workshops 2021 episode VII: the Bolzano summer of knowledge co-located with the 12th international conference on formal ontology in information systems (FOIS 2021)","author":"X Kechagioglou","year":"2021","unstructured":"Kechagioglou X, Vaira L, Tomassino P et al (2021) Ecoportal: an environment for FAIR semantic resources in the ecological domain. In: Sanfilippo EM, Kutz O, Troquard N et al (eds) Proceedings of the joint ontology workshops 2021 episode VII: the Bolzano summer of knowledge co-located with the 12th international conference on formal ontology in information systems (FOIS 2021). CEUR Workshop Proceedings, vol 2969. CEUR-WS.org, (and the 12th International Conference on Biomedical Ontologies (ICBO 2021), Bolzano, Italy, 2021)"},{"issue":"3","key":"474_CR19","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1371\/journal.pbio.3000183","volume":"17","author":"C K\u00f6nig","year":"2019","unstructured":"K\u00f6nig C, Weigelt P, Schrader J et al (2019) Biodiversity data integration\u2014the significance of data resolution and domain. PLoS Biol 17(3):1\u201316","journal-title":"PLoS Biol"},{"key":"474_CR20","volume-title":"Proceedings of the 2nd international workshop on semantics for biodiversity co-located with 16th international semantic web conference (ISWC 2017), vienna, Austria, october 22nd, 2017","author":"F L\u00f6ffler","year":"2017","unstructured":"L\u00f6ffler F, Pfaff C, Karam N et al (2017) What do biodiversity scholars search for? identifying high-level entities for biological metadata. In: Proceedings of the 2nd international workshop on semantics for biodiversity co-located with 16th international semantic web conference (ISWC 2017), vienna, Austria, october 22nd, 2017"},{"key":"474_CR21","doi-asserted-by":"publisher","unstructured":"Matentzoglu N, Balhoff JP, Bello SM et al (2022) A simple standard for sharing ontological mappings (sssom). Database: the journal of biological databases and curation vol. 2022 (2022): baac035. https:\/\/doi.org\/10.1093\/database\/baac035","DOI":"10.1093\/database\/baac035"},{"key":"474_CR22","series-title":"CEUR workshop proceedings","volume-title":"Proceedings of the 18th international workshop on ontology matching co-located with the 22nd international semantic web conference (ISWC 2023), Athens, Greece, 2023","author":"MAN Pour","year":"2023","unstructured":"Pour MAN, Algergawy A, Buche P et al (2023) Results of the ontology alignment evaluation initiative 2023. In: Shvaiko P, Euzenat J, Jim\u00e9nez-Ruiz E et al (eds) Proceedings of the 18th international workshop on ontology matching co-located with the 22nd international semantic web conference (ISWC 2023), Athens, Greece, 2023. CEUR workshop proceedings, vol 3591. CEUR-WS.org,"}],"container-title":["Datenbank-Spektrum"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/link.springer.com\/content\/pdf\/10.1007\/s13222-024-00474-5.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/link.springer.com\/article\/10.1007\/s13222-024-00474-5\/fulltext.html","content-type":"text\/html","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/link.springer.com\/content\/pdf\/10.1007\/s13222-024-00474-5.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2024,7,15]],"date-time":"2024-07-15T11:09:56Z","timestamp":1721041796000},"score":1,"resource":{"primary":{"URL":"https:\/\/link.springer.com\/10.1007\/s13222-024-00474-5"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2024,6,7]]},"references-count":22,"journal-issue":{"issue":"2","published-print":{"date-parts":[[2024,7]]}},"alternative-id":["474"],"URL":"https:\/\/doi.org\/10.1007\/s13222-024-00474-5","relation":{},"ISSN":["1618-2162","1610-1995"],"issn-type":[{"value":"1618-2162","type":"print"},{"value":"1610-1995","type":"electronic"}],"subject":[],"published":{"date-parts":[[2024,6,7]]},"assertion":[{"value":"15 February 2024","order":1,"name":"received","label":"Received","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"26 April 2024","order":2,"name":"accepted","label":"Accepted","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"7 June 2024","order":3,"name":"first_online","label":"First Online","group":{"name":"ArticleHistory","label":"Article History"}}]}}