{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,10,23]],"date-time":"2026-10-23T19:08:14Z","timestamp":1792782494072,"version":"4.5.0"},"reference-count":111,"publisher":"Springer Science and Business Media LLC","issue":"1","license":[{"start":{"date-parts":[[2026,7,8]],"date-time":"2026-07-08T00:00:00Z","timestamp":1783468800000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/creativecommons.org\/licenses\/by-nc-nd\/4.0"},{"start":{"date-parts":[[2026,10,1]],"date-time":"2026-10-01T00:00:00Z","timestamp":1790812800000},"content-version":"vor","delay-in-days":85,"URL":"https:\/\/creativecommons.org\/licenses\/by-nc-nd\/4.0"}],"funder":[{"name":"National Key Research and Development Program of China","award":["2023YFD1800703"],"award-info":[{"award-number":["2023YFD1800703"]}]},{"name":"Open Fund Project of the State Key Laboratory of Veterinary Public Health and Safety","award":["2026SKLVPHS01"],"award-info":[{"award-number":["2026SKLVPHS01"]}]},{"DOI":"10.13039\/501100004775","name":"Natural Science Foundation of Gansu Province","doi-asserted-by":"publisher","award":["25JRRA438"],"award-info":[{"award-number":["25JRRA438"]}],"id":[{"id":"10.13039\/501100004775","id-type":"DOI","asserted-by":"publisher"}]},{"name":"the Key Program of Gansu Joint Research Foundation","award":["24JRRA809"],"award-info":[{"award-number":["24JRRA809"]}]},{"name":"The Major Project of Joint Research Fund of Gansu Province","award":["25JRRA1085"],"award-info":[{"award-number":["25JRRA1085"]}]},{"name":"Key Research and Development Program of Xinjiang","award":["2025B02022-3"],"award-info":[{"award-number":["2025B02022-3"]}]},{"name":"he Innovation Program of Chinese Academy of Agricultural Sciences","award":["CAAS-ASTIP-2021-LVRI"],"award-info":[{"award-number":["CAAS-ASTIP-2021-LVRI"]}],"id":[{"id":"https:\/\/ror.org\/0313jb750","id-type":"ROR","asserted-by":"crossref"}]}],"content-domain":{"domain":["link.springer.com"],"crossmark-restriction":false},"short-container-title":["Cell. Mol. Life Sci."],"DOI":"10.1007\/s00018-026-06323-w","type":"journal-article","created":{"date-parts":[[2026,7,8]],"date-time":"2026-07-08T09:34:04Z","timestamp":1783503244000},"update-policy":"https:\/\/doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":0,"title":["Mechanisms and strategies of host xenophagy manipulation by intracellular bacteria"],"prefix":"10.1007","volume":"83","author":[{"ORCID":"https:\/\/orcid.org\/0000-0002-3817-8328","authenticated-orcid":false,"given":"Yinjuan","family":"Song","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Li","family":"Tang","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Na","family":"Li","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Xiangmei","family":"Zhou","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-9443-2677","authenticated-orcid":false,"given":"Yuefeng","family":"Chu","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"297","published-online":{"date-parts":[[2026,7,8]]},"reference":[{"issue":"3","key":"6323_CR1","doi-asserted-by":"publisher","first-page":"167","DOI":"10.1038\/s41580-022-00542-2","volume":"24","author":"JNS Vargas","year":"2023","unstructured":"Vargas JNS, Hamasaki M, Kawabata T et al (2023) The mechanisms and roles of selective autophagy in mammals. Nat Rev Mol Cell Biol 24(3):167\u2013185. https:\/\/doi.org\/10.1038\/s41580-022-00542-2 PubMed PMID: 36302887","journal-title":"Nat Rev Mol Cell Biol"},{"key":"6323_CR2","doi-asserted-by":"publisher","unstructured":"Dikic I, Elazar Z (2018) Mechanism and medical implications of mammalian autophagy. Nat Rev Mol Cell Biol. ;19(6):349\u2013364. https:\/\/doi.org\/10.1038\/s41580-018-0003-4. PubMed PMID: 29618831","DOI":"10.1038\/s41580-018-0003-4"},{"issue":"2","key":"6323_CR3","doi-asserted-by":"publisher","first-page":"224","DOI":"10.1016\/j.molcel.2014.03.009","volume":"54","author":"LC Gomes","year":"2014","unstructured":"Gomes LC, Dikic I (2014) Autophagy in antimicrobial immunity. Mol Cell 54(2):224\u2013233. https:\/\/doi.org\/10.1016\/j.molcel.2014.03.009 PubMed PMID: 24766886","journal-title":"Mol Cell"},{"issue":"2","key":"6323_CR4","doi-asserted-by":"publisher","first-page":"99","DOI":"10.3858\/emm.2012.44","volume":"44","author":"JM Yuk","year":"2012","unstructured":"Yuk JM, Yoshimori T, Jo EK (2012) Autophagy and bacterial infectious diseases. Exp Mol Med 44(2):99\u2013108. https:\/\/doi.org\/10.3858\/emm.2012.44.2.032. PubMed PMID: 22257885; PubMed Central PMCID: PMCPMC3296818","journal-title":"Exp Mol Med"},{"key":"6323_CR5","doi-asserted-by":"publisher","unstructured":"Samson E, Xenophagy. Br Dent J (1981) ;150(5):136. https:\/\/doi.org\/10.1038\/sj.bdj.4804559. PubMed PMID: 6937205","DOI":"10.1038\/sj.bdj.4804559"},{"issue":"2","key":"6323_CR6","doi-asserted-by":"publisher","first-page":"159","DOI":"10.1016\/j.cell.2005.01.005","volume":"120","author":"B Levine","year":"2005","unstructured":"Levine B (2005) Eating oneself and uninvited guests: autophagy-related pathways in cellular defense. Cell 120(2):159\u2013162. https:\/\/doi.org\/10.1016\/j.cell.2005.01.005 PubMed PMID: 15680321","journal-title":"Cell"},{"issue":"10","key":"6323_CR7","doi-asserted-by":"publisher","first-page":"1014","DOI":"10.1038\/ni.3273","volume":"16","author":"ST Shibutani","year":"2015","unstructured":"Shibutani ST, Saitoh T, Nowag H et al (2015) Autophagy and autophagy-related proteins in the immune system. Nat Immunol 16(10):1014\u20131024. https:\/\/doi.org\/10.1038\/ni.3273 PubMed PMID: 26382870","journal-title":"Nat Immunol"},{"key":"6323_CR8","unstructured":"WHO Global tuberculosis report 2025"},{"key":"6323_CR9","doi-asserted-by":"publisher","first-page":"1629008","DOI":"10.3389\/fmed.2025.1629008","volume":"12","author":"AM Almuzaini","year":"2025","unstructured":"Almuzaini AM, Elbehiry A (2025) Unraveling brucellosis: advances in pathogenesis, diagnostic strategies, therapeutic innovations, and public health perspectives. Front Med (Lausanne) 12:1629008. https:\/\/doi.org\/10.3389\/fmed.2025.1629008 PubMed PMID: 41133153; PubMed Central PMCID: PMCPMC12540454","journal-title":"Front Med (Lausanne)"},{"key":"6323_CR10","doi-asserted-by":"publisher","first-page":"100117","DOI":"10.1016\/j.soh.2025.100117","volume":"4","author":"R Kumar","year":"2025","unstructured":"Kumar R, Adeyemi NO, Chattaraj S et al (2025) Antimicrobial resistance in Salmonella: One Health perspective on global food safety challenges. Sci One Health 4:100117. https:\/\/doi.org\/10.1016\/j.soh.2025.100117 PubMed PMID: 40687400; PubMed Central PMCID: PMCPMC12274912","journal-title":"Sci One Health"},{"issue":"2","key":"6323_CR11","doi-asserted-by":"publisher","first-page":"101","DOI":"10.1038\/nrmicro3160","volume":"12","author":"J Huang","year":"2014","unstructured":"Huang J, Brumell JH (2014) Bacteria-autophagy interplay: a battle for survival. Nat Rev Microbiol 12(2):101\u2013114. https:\/\/doi.org\/10.1038\/nrmicro3160 PubMed PMID: 24384599; PubMed Central PMCID: PMCPMC7097477","journal-title":"Nat Rev Microbiol"},{"key":"6323_CR12","doi-asserted-by":"publisher","unstructured":"Figueras-Novoa C, Timimi L, Marcassa E et al (2024) Conjugation of ATG8s to single membranes at a glance. J Cell Sci 137(15):jcs261031. https:\/\/doi.org\/10.1242\/jcs.261031","DOI":"10.1242\/jcs.261031"},{"key":"6323_CR13","doi-asserted-by":"crossref","unstructured":"Heckmann BL, Green DR (2019) LC3-associated phagocytosis at a glance. Journal of Cell Science. ;132(5). doi: ARTN jcs22298410.1242\/jcs.222984. PubMed PMID: WOS:000461414300017","DOI":"10.1242\/jcs.231472"},{"key":"6323_CR14","doi-asserted-by":"crossref","unstructured":"Wang YX, Ramos M, Jefferson M et al (2022) Control of infection by LC3-associated phagocytosis, CASM, and detection of raised vacuolar pH by the V-ATPase-ATG16L1 axis. Science Advances. ;8(43). doi: ARTN eabn329810.1126\/sciadv.abn3298. PubMed PMID: WOS:000965946100005","DOI":"10.1126\/sciadv.abn3298"},{"key":"6323_CR15","doi-asserted-by":"crossref","unstructured":"Durgan J, Florey O (2022) Many roads lead to CASM: Diverse stimuli of noncanonical autophagy share a unifying molecular mechanism. Science Advances. ;8(43). doi: ARTN eabo127410.1126\/sciadv.abo1274. PubMed PMID: WOS:000890824100006","DOI":"10.1126\/sciadv.abo1274"},{"key":"6323_CR16","doi-asserted-by":"publisher","unstructured":"Hooper KM, Jacquin E, Li TYN et al (2022) V-ATPase is a universal regulator of LC3-associated phagocytosis and non-canonical autophagy. J Cell Biol 221(6):e202105112. https:\/\/doi.org\/10.1083\/jcb.202105112 PubMed PMID: WOS:000868291900001","DOI":"10.1083\/jcb.202105112"},{"issue":"16","key":"6323_CR17","doi-asserted-by":"publisher","first-page":"11374","DOI":"10.1074\/jbc.M509157200","volume":"281","author":"CL Birmingham","year":"2006","unstructured":"Birmingham CL, Smith AC, Bakowski MA et al (2006) Autophagy controls Salmonella infection in response to damage to the Salmonella-containing vacuole. J Biol Chem 281(16):11374\u201311383. https:\/\/doi.org\/10.1074\/jbc.M509157200 PubMed PMID: 16495224","journal-title":"J Biol Chem"},{"key":"6323_CR18","doi-asserted-by":"publisher","first-page":"1613","DOI":"10.1038\/ncomms2606","volume":"4","author":"BW Kim","year":"2013","unstructured":"Kim BW, Hong SB, Kim JH et al (2013) Structural basis for recognition of autophagic receptor NDP52 by the sugar receptor galectin-8. Nat Commun 4:1613. https:\/\/doi.org\/10.1038\/ncomms2606 PubMed PMID: 23511477","journal-title":"Nat Commun"},{"issue":"261","key":"6323_CR19","doi-asserted-by":"publisher","first-page":"ra9","DOI":"10.1126\/scisignal.2003730","volume":"6","author":"S Li","year":"2013","unstructured":"Li S, Wandel MP, Li F et al (2013) Sterical hindrance promotes selectivity of the autophagy cargo receptor NDP52 for the danger receptor galectin-8 in antibacterial autophagy. Sci Signal 6(261):ra9. https:\/\/doi.org\/10.1126\/scisignal.2003730 PubMed PMID: 23386746; PubMed Central PMCID: PMCPMC3713453","journal-title":"Sci Signal"},{"issue":"7385","key":"6323_CR20","doi-asserted-by":"publisher","first-page":"414","DOI":"10.1038\/nature10744","volume":"482","author":"TL Thurston","year":"2012","unstructured":"Thurston TL, Wandel MP, von Muhlinen N et al (2012) Galectin 8 targets damaged vesicles for autophagy to defend cells against bacterial invasion. Nature 482(7385):414\u2013418. https:\/\/doi.org\/10.1038\/nature10744 PubMed PMID: 22246324; PubMed Central PMCID: PMCPMC3343631","journal-title":"Nature"},{"issue":"1","key":"6323_CR21","doi-asserted-by":"publisher","first-page":"120","DOI":"10.1016\/j.molcel.2018.03.009","volume":"70","author":"JY Jia","year":"2018","unstructured":"Jia JY, Abudu YP, Claude-Taupin A et al (2018) Galectins Control mTOR in Response to Endomembrane Damage. Mol Cell 70(1):120\u2013. https:\/\/doi.org\/10.1016\/j.molcel.2018.03.009 PubMed PMID: WOS:000429301100013","journal-title":"Mol Cell"},{"key":"6323_CR22","doi-asserted-by":"crossref","unstructured":"Lerner TR, Queval CJ, Fearns A et al (2018) Phthiocerol dimycocerosates promote access to the cytosol and intracellular burden of in lymphatic endothelial cells. Bmc Biology. ;16. doi: ARTN 110.1186\/s12915-017-0471-6. PubMed PMID: WOS:000422722300001","DOI":"10.1186\/s12915-017-0471-6"},{"issue":"4","key":"6323_CR23","doi-asserted-by":"publisher","first-page":"e0187120","DOI":"10.1128\/mBio.01871-20","volume":"12","author":"SL Bell","year":"2021","unstructured":"Bell SL, Lopez KL, Cox JS et al (2021) Galectin-8 Senses Phagosomal Damage and Recruits Selective Autophagy Adapter TAX1BP1 To Control Mycobacterium tuberculosis Infection in Macrophages. mBio 12(4):e0187120. https:\/\/doi.org\/10.1128\/mBio.01871-20 PubMed PMID: 34225486; PubMed Central PMCID: PMCPMC8406326","journal-title":"mBio"},{"key":"6323_CR24","doi-asserted-by":"publisher","first-page":"583137","DOI":"10.3389\/fcimb.2020.583137","volume":"10","author":"CY Lin","year":"2020","unstructured":"Lin CY, Nozawa T, Minowa-Nozawa A et al (2020) Autophagy Receptor Tollip Facilitates Bacterial Autophagy by Recruiting Galectin-7 in Response to Group A Streptococcus Infection. Front Cell Infect Microbiol 10:583137. https:\/\/doi.org\/10.3389\/fcimb.2020.583137 PubMed PMID: 33425778; PubMed Central PMCID: PMCPMC7786282","journal-title":"Front Cell Infect Microbiol"},{"issue":"11","key":"6323_CR25","doi-asserted-by":"publisher","first-page":"2751","DOI":"10.1080\/15548627.2022.2062889","volume":"18","author":"Y Xu","year":"2022","unstructured":"Xu Y, Ding JJ (2022) Endomembrane damage sensing by V-ATPase recruits ATG16L1 for LC3 lipidation. Autophagy 18(11):2751\u20132753 PubMed PMID: WOS:000781649500001","journal-title":"Autophagy"},{"issue":"3","key":"6323_CR26","doi-asserted-by":"publisher","first-page":"552","DOI":"10.1016\/j.cell.2019.06.007","volume":"178","author":"Y Xu","year":"2019","unstructured":"Xu Y, Zhou P, Cheng S et al (2019) A Bacterial Effector Reveals the V-ATPase-ATG16L1 Axis that Initiates Xenophagy. Cell 178(3):552\u2013. https:\/\/doi.org\/10.1016\/j.cell.2019.06.007 PubMed PMID: WOS:000476973800007","journal-title":"Cell"},{"issue":"8","key":"6323_CR27","doi-asserted-by":"publisher","first-page":"1065","DOI":"10.1111\/cmi.12623","volume":"18","author":"DG Russell","year":"2016","unstructured":"Russell DG (2016) The ins and outs of the Mycobacterium tuberculosis-containing vacuole. Cell Microbiol 18(8):1065\u20131069. https:\/\/doi.org\/10.1111\/cmi.12623 PubMed Central PMCID: PMCPMC4990779","journal-title":"Cell Microbiol"},{"key":"6323_CR28","doi-asserted-by":"publisher","unstructured":"Quigley J, Hughitt VK, Velikovsky CA et al (2017) The Cell Wall Lipid PDIM Contributes to Phagosomal Escape and Host Cell Exit of Mycobacterium tuberculosis. mBio 8(2). https:\/\/doi.org\/10.1128\/mBio.00148-17 PubMed PMID: 28270579; PubMed Central PMCID: PMCPMC5340868","DOI":"10.1128\/mBio.00148-17"},{"issue":"4","key":"6323_CR29","doi-asserted-by":"publisher","first-page":"191","DOI":"10.1038\/nrmicro3420","volume":"13","author":"DL LaRock","year":"2015","unstructured":"LaRock DL, Chaudhary A, Miller SI (2015) Salmonellae interactions with host processes. Nat Rev Microbiol 13(4):191\u2013205. https:\/\/doi.org\/10.1038\/nrmicro3420 PubMed PMID: 25749450; PubMed Central PMCID: PMCPMC5074537","journal-title":"Nat Rev Microbiol"},{"issue":"3","key":"6323_CR30","doi-asserted-by":"publisher","first-page":"333","DOI":"10.1111\/cmi.12420","volume":"17","author":"AM Kolodziejek","year":"2015","unstructured":"Kolodziejek AM, Miller SI (2015) Salmonella modulation of the phagosome membrane, role of SseJ. Cell Microbiol 17(3):333\u2013341. https:\/\/doi.org\/10.1111\/cmi.12420 PubMed PMID: 25620407","journal-title":"Cell Microbiol"},{"issue":"3","key":"6323_CR31","doi-asserted-by":"publisher","first-page":"645","DOI":"10.1046\/j.1365-2958.2002.02912","volume":"44","author":"J Ruiz-Albert","year":"2002","unstructured":"Ruiz-Albert J, Yu XJ, Beuzon CR et al (2002) Complementary activities of SseJ and SifA regulate dynamics of the Salmonella typhimurium vacuolar membrane. Mol Microbiol 44(3):645\u2013661. https:\/\/doi.org\/10.1046\/j.1365-2958.2002.02912.x. PubMed PMID: 11994148","journal-title":"Mol Microbiol"},{"issue":"3","key":"6323_CR32","doi-asserted-by":"publisher","first-page":"e12988","DOI":"10.1111\/cmi.12988","volume":"21","author":"BN Nguyen","year":"2019","unstructured":"Nguyen BN, Peterson BN, Portnoy DA, Listeriolysin O (2019) A phagosome-specific cytolysin revisited. Cell Microbiol 21(3):e12988 : 10.1111\/cmi.12988. PubMed PMID: 30511471; PubMed Central PMCID: PMCPMC6779163","journal-title":"Cell Microbiol"},{"key":"6323_CR33","doi-asserted-by":"crossref","unstructured":"Petrisic N, Adamek M, Kezar A et al (2023) Structural basis for the unique molecular properties of broad-range phospholipase C from Listeria monocytogenes. Nature Communications. ;14(1). doi: ARTN 647410.1038\/s41467-023-42134-4. PubMed PMID: WOS:001095513800021","DOI":"10.1038\/s41467-023-42134-4"},{"issue":"6","key":"6323_CR34","doi-asserted-by":"publisher","first-page":"1029","DOI":"10.1083\/jcb.200201081","volume":"156","author":"IJ Glomski","year":"2002","unstructured":"Glomski IJ, Gedde MM, Tsang AW et al (2002) The Listeria monocytogenes hemolysin has an acidic pH optimum to compartmentalize activity and prevent damage to infected host cells. J Cell Biol 156(6):1029\u20131038. https:\/\/doi.org\/10.1083\/jcb.200201081 PubMed PMID: 11901168; PubMed Central PMCID: PMCPMC2173464","journal-title":"J Cell Biol"},{"issue":"35","key":"6323_CR35","doi-asserted-by":"publisher","first-page":"12537","DOI":"10.1073\/pnas.0500558102","volume":"102","author":"DW Schuerch","year":"2005","unstructured":"Schuerch DW, Wilson-Kubalek EM, Tweten RK (2005) Molecular basis of listeriolysin O pH dependence. Proc Natl Acad Sci U S A 102(35):12537\u201312542. https:\/\/doi.org\/10.1073\/pnas.0500558102 PubMed PMID: 16105950; PubMed Central PMCID: PMCPMC1194900","journal-title":"Proc Natl Acad Sci U S A"},{"issue":"4","key":"6323_CR36","doi-asserted-by":"publisher","first-page":"1633","DOI":"10.1073\/pnas.1013262108","volume":"108","author":"AL Radtke","year":"2011","unstructured":"Radtke AL, Anderson KL, Davis MJ et al (2011) Listeria monocytogenes exploits cystic fibrosis transmembrane conductance regulator (CFTR) to escape the phagosome. Proc Natl Acad Sci U S A 108(4):1633\u20131638. https:\/\/doi.org\/10.1073\/pnas.1013262108 PubMed PMID: 21220348; PubMed Central PMCID: PMCPMC3029685","journal-title":"Proc Natl Acad Sci U S A"},{"issue":"1","key":"6323_CR37","doi-asserted-by":"publisher","first-page":"27","DOI":"10.14348\/molcells.2018.2274","volume":"41","author":"DH Kwon","year":"2018","unstructured":"Kwon DH, Song HK (2018) A Structural View of Xenophagy, a Battle between Host and Microbes. Mol Cells 41(1):27\u201334. https:\/\/doi.org\/10.14348\/molcells.2018.2274 PubMed PMID: 29370690; PubMed Central PMCID: PMCPMC5792709","journal-title":"Mol Cells"},{"key":"6323_CR38","doi-asserted-by":"publisher","unstructured":"Chai Q, Wang X, Qiang L et al (2019) A Mycobacterium tuberculosis surface protein recruits ubiquitin to trigger host xenophagy. Nat Commun. ;10(1):1973. https:\/\/doi.org\/10.1038\/s41467-019-09955-8. PubMed PMID: 31036822; PubMed Central PMCID: PMCPMC6488588","DOI":"10.1038\/s41467-019-09955-8"},{"issue":"11","key":"6323_CR39","doi-asserted-by":"publisher","first-page":"e52584","DOI":"10.15252\/embr.202152584","volume":"22","author":"A Yamada","year":"2021","unstructured":"Yamada A, Hikichi M, Nozawa T et al (2021) FBXO2\/SCF ubiquitin ligase complex directs xenophagy through recognizing bacterial surface glycan. EMBO Rep 22(11):e52584. https:\/\/doi.org\/10.15252\/embr.202152584 PubMed PMID: 34515398; PubMed Central PMCID: PMCPMC8567282","journal-title":"EMBO Rep"},{"issue":"7861","key":"6323_CR40","doi-asserted-by":"publisher","first-page":"111","DOI":"10.1038\/s41586-021-03566-4","volume":"594","author":"EG Otten","year":"2021","unstructured":"Otten EG, Werner E, Crespillo-Casado A et al (2021) Ubiquitylation of lipopolysaccharide by RNF213 during bacterial infection. Nature 594(7861):111\u2013116. https:\/\/doi.org\/10.1038\/s41586-021-03566-4 PubMed PMID: 34012115; PubMed Central PMCID: PMCPMC7610904","journal-title":"Nature"},{"issue":"1","key":"6323_CR41","doi-asserted-by":"publisher","first-page":"32","DOI":"10.1038\/s41421-020-0161-3","volume":"6","author":"T Nishimura","year":"2020","unstructured":"Nishimura T, Tooze SA (2020) Emerging roles of ATG proteins and membrane lipids in autophagosome formation. Cell Discov 6(1):32. https:\/\/doi.org\/10.1038\/s41421-020-0161-3 PubMed PMID: 32509328; PubMed Central PMCID: PMCPMC7248066","journal-title":"Cell Discov"},{"issue":"9","key":"6323_CR42","doi-asserted-by":"publisher","first-page":"806","DOI":"10.1016\/j.cub.2004.04","volume":"14","author":"AJ Perrin","year":"2004","unstructured":"Perrin AJ, Jiang X, Birmingham CL et al (2004) Recognition of bacteria in the cytosol of Mammalian cells by the ubiquitin system. Curr Biol 14(9):806\u2013811. https:\/\/doi.org\/10.1016\/j.cub.2004.04.033. PubMed PMID: 15120074","journal-title":"Curr Biol"},{"issue":"4","key":"6323_CR43","doi-asserted-by":"publisher","first-page":"1737","DOI":"10.1042\/BST20200237","volume":"48","author":"TR Cotton","year":"2020","unstructured":"Cotton TR, Lechtenberg BC (2020) Chain reactions: molecular mechanisms of RBR ubiquitin ligases. Biochem Soc Trans 48(4):1737\u20131750 doi: 10.1042\/BST20200237. PubMed PMID: 32677670; PubMed Central PMCID: PMCPMC7458406","journal-title":"Biochem Soc Trans"},{"issue":"7714","key":"6323_CR44","doi-asserted-by":"publisher","first-page":"410","DOI":"10.1038\/s41586-018-0224-x","volume":"559","author":"C Gladkova","year":"2018","unstructured":"Gladkova C, Maslen SL, Skehel JM et al (2018) Mechanism of parkin activation by PINK1. Nature 559(7714):410\u2013414. https:\/\/doi.org\/10.1038\/s41586-018-0224-x PubMed PMID: 29995846; PubMed Central PMCID: PMCPMC6071873","journal-title":"Nature"},{"issue":"7468","key":"6323_CR45","doi-asserted-by":"publisher","first-page":"512","DOI":"10.1038\/nature12566","volume":"501","author":"PS Manzanillo","year":"2013","unstructured":"Manzanillo PS, Ayres JS, Watson RO et al (2013) The ubiquitin ligase parkin mediates resistance to intracellular pathogens. Nature 501(7468):512\u2013516. https:\/\/doi.org\/10.1038\/nature12566 PubMed PMID: 24005326; PubMed Central PMCID: PMCPMC3886920","journal-title":"Nature"},{"issue":"4","key":"6323_CR46","doi-asserted-by":"publisher","first-page":"803","DOI":"10.1016\/j.cell.2012.06.040","volume":"150","author":"RO Watson","year":"2012","unstructured":"Watson RO, Manzanillo PS, Cox JS, Extracellular M (2012) tuberculosis DNA targets bacteria for autophagy by activating the host DNA-sensing pathway. Cell 150(4):803\u2013815. https:\/\/doi.org\/10.1016\/j.cell.2012.06.040 PubMed PMID: 22901810; PubMed Central PMCID: PMCPMC3708656","journal-title":"Cell"},{"key":"6323_CR47","doi-asserted-by":"publisher","unstructured":"Rittinger K, Ikeda F (2017) Linear ubiquitin chains: enzymes, mechanisms and biology. Open Biol 7(4). https:\/\/doi.org\/10.1098\/rsob.170026. PubMed PMID: 28446710; PubMed Central PMCID: PMCPMC5413910","DOI":"10.1098\/rsob"},{"key":"6323_CR48","doi-asserted-by":"publisher","first-page":"17063","DOI":"10.1038\/nmicrobiol.2017.63","volume":"2","author":"J Noad","year":"2017","unstructured":"Noad J, von der Malsburg A, Pathe C et al (2017) LUBAC-synthesized linear ubiquitin chains restrict cytosol-invading bacteria by activating autophagy and NF-kappaB. Nat Microbiol 2:17063. https:\/\/doi.org\/10.1038\/nmicrobiol.2017.63 PubMed PMID: 28481331; PubMed Central PMCID: PMCPMC5576533","journal-title":"Nat Microbiol"},{"issue":"2","key":"6323_CR49","doi-asserted-by":"publisher","first-page":"557","DOI":"10.1038\/s41418-020-00702-x","volume":"28","author":"BK Fiil","year":"2021","unstructured":"Fiil BK, Gyrd-Hansen M (2021) The Met1-linked ubiquitin machinery in inflammation and infection. Cell Death Differ 28(2):557\u2013569. https:\/\/doi.org\/10.1038\/s41418-020-00702-x PubMed PMID: 33473179; PubMed Central PMCID: PMCPMC7816137","journal-title":"Cell Death Differ"},{"key":"6323_CR50","doi-asserted-by":"publisher","first-page":"295","DOI":"10.3389\/fonc.2018.00295","volume":"8","author":"P Koganti","year":"2018","unstructured":"Koganti P, Levy-Cohen G, Blank M (2018) Smurfs in Protein Homeostasis, Signaling, and Cancer. Front Oncol 8:295 : 10.3389\/fonc.2018.00295. PubMed PMID: 30116722; PubMed Central PMCID: PMCPMC6082930","journal-title":"Front Oncol"},{"issue":"11","key":"6323_CR51","doi-asserted-by":"publisher","first-page":"e52864","DOI":"10.15252\/embr.202152864","volume":"22","author":"I Tripathi-Giesgen","year":"2021","unstructured":"Tripathi-Giesgen I, Behrends C, Alpi AF (2021) The ubiquitin ligation machinery in the defense against bacterial pathogens. EMBO Rep 22(11):e52864. https:\/\/doi.org\/10.15252\/embr.202152864 PubMed PMID: 34515402; PubMed Central PMCID: PMCPMC8567218","journal-title":"EMBO Rep"},{"issue":"7375","key":"6323_CR52","doi-asserted-by":"publisher","first-page":"113","DOI":"10.1038\/nature10546","volume":"480","author":"A Orvedahl","year":"2011","unstructured":"Orvedahl A, Sumpter R Jr., Xiao G et al (2011) Image-based genome-wide siRNA screen identifies selective autophagy factors. Nature 480(7375):113\u2013117. https:\/\/doi.org\/10.1038\/nature10546 PubMed PMID: 22020285; PubMed Central PMCID: PMCPMC3229641","journal-title":"Nature"},{"issue":"3","key":"6323_CR53","doi-asserted-by":"publisher","first-page":"421","DOI":"10.1016\/j.chom.2017.08.005","volume":"22","author":"LH Franco","year":"2017","unstructured":"Franco LH, Nair VR, Scharn CR et al (2017) The Ubiquitin Ligase Smurf1 Functions in Selective Autophagy of Mycobacterium tuberculosis and Anti-tuberculous Host Defense. Cell Host Microbe 22(3):421\u2013423 PubMed PMID: 28910640; PubMed Central PMCID: PMCPMC5818210","journal-title":"Cell Host Microbe"},{"issue":"6","key":"6323_CR54","doi-asserted-by":"publisher","first-page":"1030","DOI":"10.1016\/j.str.2013.04.019","volume":"21","author":"DM Duda","year":"2013","unstructured":"Duda DM, Olszewski JL, Schuermann JP et al (2013) Structure of HHARI, a RING-IBR-RING Ubiquitin Ligase: Autoinhibition of an Ariadne-Family E3 and Insights into Ligation Mechanism. Structure 21(6):1030\u20131041 PubMed PMID: WOS:000320739800019","journal-title":"Structure"},{"key":"6323_CR55","doi-asserted-by":"publisher","unstructured":"Yuan LM, Lv ZY, Atkison JH et al (2017) Structural insights into the mechanism and E2 specificity of the RBR E3 ubiquitin ligase HHARI. Nat Commun 8(1):211. https:\/\/doi.org\/10.1038\/s41467-017-00272-6 PubMed PMID: WOS:000407174900006","DOI":"10.1038\/s41467-017-00272-6"},{"issue":"9","key":"6323_CR56","doi-asserted-by":"publisher","first-page":"1572","DOI":"10.15252\/embr.201643851","volume":"18","author":"M Polajnar","year":"2017","unstructured":"Polajnar M, Dietz MS, Heilemann M et al (2017) Expanding the host cell ubiquitylation machinery targeting cytosolic Salmonella. EMBO Rep 18(9):1572\u20131585. https:\/\/doi.org\/10.15252\/embr.201643851 PubMed PMID: 28784601; PubMed Central PMCID: PMCPMC5579355","journal-title":"EMBO Rep"},{"key":"6323_CR57","doi-asserted-by":"publisher","first-page":"1205355","DOI":"10.3389\/fcimb.2023.1205355","volume":"13","author":"Y Zhang","year":"2023","unstructured":"Zhang Y, Yuan Y, Jiang L et al (2023) The emerging role of E3 ubiquitin ligase RNF213 as an antimicrobial host determinant. Front Cell Infect Microbiol 13:1205355. https:\/\/doi.org\/10.3389\/fcimb.2023.1205355 PubMed PMID: 37655297; PubMed Central PMCID: PMCPMC10465799","journal-title":"Front Cell Infect Microbiol"},{"key":"6323_CR58","doi-asserted-by":"publisher","first-page":"735416","DOI":"10.3389\/fcimb.2021.735416","volume":"11","author":"L Martina","year":"2021","unstructured":"Martina L, Asselman C, Thery F et al (2021) Proteome Profiling of RNF213 Depleted Cells Reveals Nitric Oxide Regulator DDAH1 Antilisterial Activity. Front Cell Infect Microbiol 11:735416. https:\/\/doi.org\/10.3389\/fcimb.2021.735416 PubMed PMID: 34804992; PubMed Central PMCID: PMCPMC8595287","journal-title":"Front Cell Infect Microbiol"},{"issue":"1","key":"6323_CR59","doi-asserted-by":"publisher","first-page":"5772","DOI":"10.1038\/s41467-021-26061-w","volume":"12","author":"F Thery","year":"2021","unstructured":"Thery F, Martina L, Asselman C et al (2021) Ring finger protein 213 assembles into a sensor for ISGylated proteins with antimicrobial activity. Nat Commun 12(1):5772. https:\/\/doi.org\/10.1038\/s41467-021-26061-w PubMed PMID: 34599178; PubMed Central PMCID: PMCPMC8486878","journal-title":"Nat Commun"},{"issue":"1","key":"6323_CR60","doi-asserted-by":"publisher","first-page":"95","DOI":"10.1016\/j.bbrc.2017.02.026","volume":"485","author":"W Bian","year":"2017","unstructured":"Bian W, Guo Y, Zhang Y et al (2017) The self-association and activity regulation of LRSAM1 E3 ligase. Biochem Biophys Res Commun 485(1):95\u2013101 .026. PubMed PMID: 28189685","journal-title":"Biochem Biophys Res Commun"},{"issue":"6","key":"6323_CR61","doi-asserted-by":"publisher","first-page":"778","DOI":"10.1016\/j.chom.2012.10.019","volume":"12","author":"A Huett","year":"2012","unstructured":"Huett A, Heath RJ, Begun J et al (2012) The LRR and RING domain protein LRSAM1 is an E3 ligase crucial for ubiquitin-dependent autophagy of intracellular Salmonella Typhimurium. Cell Host Microbe 12(6):778\u2013790. https:\/\/doi.org\/10.1016\/j.chom.2012.10.019 PubMed PMID: 23245322; PubMed Central PMCID: PMCPMC3785244","journal-title":"Cell Host Microbe"},{"issue":"5","key":"6323_CR62","doi-asserted-by":"publisher","first-page":"797","DOI":"10.1016\/j.molcel.2012.06.017","volume":"47","author":"SJ van Wijk","year":"2012","unstructured":"van Wijk SJ, Fiskin E, Putyrski M et al (2012) Fluorescence-based sensors to monitor localization and functions of linear and K63-linked ubiquitin chains in cells. Mol Cell 47(5):797\u2013809. https:\/\/doi.org\/10.1016\/j.molcel.2012.06.017 PubMed PMID: 22819327; PubMed Central PMCID: PMCPMC3714537","journal-title":"Mol Cell"},{"key":"6323_CR63","doi-asserted-by":"publisher","unstructured":"Ogawa M, Yoshimori T, Suzuki T et al (2005) Escape of intracellular Shigella from autophagy. Science. ;307(5710):727\u2009\u2013\u200931. https:\/\/doi.org\/10.1126\/science.1106036. PubMed PMID: 15576571","DOI":"10.1126\/science.1106036"},{"issue":"6","key":"6323_CR64","doi-asserted-by":"publisher","first-page":"735","DOI":"10.1016\/j.chom.2012.11.007","volume":"12","author":"J Celli","year":"2012","unstructured":"Celli J (2012) LRSAM1, an E3 Ubiquitin ligase with a sense for bacteria. Cell Host Microbe 12(6):735\u2013736. https:\/\/doi.org\/10.1016\/j.chom.2012.11.007 PubMed PMID: 23245317; PubMed Central PMCID: PMCPMC3601774","journal-title":"Cell Host Microbe"},{"issue":"9","key":"6323_CR65","doi-asserted-by":"publisher","first-page":"2183","DOI":"10.1016\/j.celrep.2016.11.005","volume":"17","author":"RJ Heath","year":"2016","unstructured":"Heath RJ, Goel G, Baxt LA et al (2016) RNF166 Determines Recruitment of Adaptor Proteins during Antibacterial Autophagy. Cell Rep 17(9):2183\u20132194. https:\/\/doi.org\/10.1016\/j.celrep.2016.11.005 PubMed PMID: 27880896; PubMed Central PMCID: PMCPMC5192565","journal-title":"Cell Rep"},{"issue":"2","key":"6323_CR66","doi-asserted-by":"publisher","first-page":"308","DOI":"10.1016\/j.molcel.2017.09.005","volume":"68","author":"S Jin","year":"2017","unstructured":"Jin S, Tian S, Luo M et al (2017) Tetherin Suppresses Type I Interferon Signaling by Targeting MAVS for NDP52-Mediated Selective Autophagic Degradation in Human Cells. Mol Cell 68(2):308\u2013322e4 PubMed PMID: 28965816","journal-title":"Mol Cell"},{"issue":"9","key":"6323_CR67","doi-asserted-by":"publisher","first-page":"2456","DOI":"10.4049\/jimmunol.2000048","volume":"205","author":"NJ Hos","year":"2020","unstructured":"Hos NJ, Fischer J, Hos D et al (2020) TRIM21 Is Targeted for Chaperone-Mediated Autophagy during Salmonella Typhimurium Infection. J Immunol 205(9):2456\u20132467. https:\/\/doi.org\/10.4049\/jimmunol.2000048 PubMed PMID: 32948684; PubMed Central PMCID: PMCPMC7576115","journal-title":"J Immunol"},{"issue":"11","key":"6323_CR68","doi-asserted-by":"publisher","first-page":"8971","DOI":"10.1002\/jcb.27153","volume":"119","author":"J Lou","year":"2018","unstructured":"Lou J, Wang Y, Zheng X et al (2018) TRIM22 regulates macrophage autophagy and enhances Mycobacterium tuberculosis clearance by targeting the nuclear factor-multiplicity kappaB\/beclin 1 pathway. J Cell Biochem 119(11):8971\u20138980. https:\/\/doi.org\/10.1002\/jcb.27153 PubMed PMID: 30011088","journal-title":"J Cell Biochem"},{"issue":"1","key":"6323_CR69","doi-asserted-by":"publisher","first-page":"13","DOI":"10.1016\/j.devcel.2016.08.003","volume":"39","author":"S Chauhan","year":"2016","unstructured":"Chauhan S, Kumar S, Jain A et al (2016) TRIMs and Galectins Globally Cooperate and TRIM16 and Galectin-3 Co-direct Autophagy in Endomembrane Damage Homeostasis. Dev Cell 39(1):13\u201327 PubMed PMID: 27693506; PubMed Central PMCID: PMCPMC5104201","journal-title":"Dev Cell"},{"issue":"5","key":"6323_CR70","doi-asserted-by":"publisher","first-page":"109671","DOI":"10.1016\/j.isci.2024.109671","volume":"27","author":"W Zhang","year":"2024","unstructured":"Zhang W, Dong C, Xiong S (2024) Mycobacterial SapM hampers host autophagy initiation for intracellular bacillary survival via dephosphorylating Raptor. iScience 27(5):109671. https:\/\/doi.org\/10.1016\/j.isci.2024.109671 PubMed PMID: 38646170; PubMed Central PMCID: PMCPMC11031826","journal-title":"iScience"},{"issue":"2","key":"6323_CR71","doi-asserted-by":"publisher","first-page":"401","DOI":"10.1016\/j.bbrc.2015.04.051","volume":"461","author":"D Hu","year":"2015","unstructured":"Hu D, Wu J, Wang W et al (2015) Autophagy regulation revealed by SapM-induced block of autophagosome-lysosome fusion via binding RAB7. Biochem Biophys Res Commun 461(2):401\u2013407 .051. PubMed PMID: 25896765","journal-title":"Biochem Biophys Res Commun"},{"issue":"3","key":"6323_CR72","doi-asserted-by":"publisher","first-page":"684","DOI":"10.1080\/15548627.2024.2439928","volume":"21","author":"E Mittal","year":"2025","unstructured":"Mittal E, Philips JA (2025) The Mycobacterium tuberculosis lipid, PDIM, inhibits the NADPH oxidase and autophagy. Autophagy 21(3):684\u2013685 doi: 10.1080\/15548627.2024.2439928. PubMed PMID: 39663582; PubMed Central PMCID: PMCPMC11849942","journal-title":"Autophagy"},{"issue":"11","key":"6323_CR73","doi-asserted-by":"publisher","first-page":"2970","DOI":"10.1038\/s41564-024-01797-5","volume":"9","author":"E Mittal","year":"2024","unstructured":"Mittal E, Prasad G, Upadhyay S et al (2024) Mycobacterium tuberculosis virulence lipid PDIM inhibits autophagy in mice. Nat Microbiol 9(11):2970\u20132984. https:\/\/doi.org\/10.1038\/s41564-024-01797-5 PubMed PMID: 39242815; PubMed Central PMCID: PMCPMC12097147","journal-title":"Nat Microbiol"},{"key":"6323_CR74","doi-asserted-by":"publisher","first-page":"1014897","DOI":"10.3389\/fcimb.2022.1014897","volume":"12","author":"J Fang","year":"2022","unstructured":"Fang J, Dong C, Xiong S (2022) Mycobacterium tuberculosis Rv0790c inhibits the cellular autophagy at its early stage and facilitates mycobacterial survival. Front Cell Infect Microbiol 12:1014897. https:\/\/doi.org\/10.3389\/fcimb.2022.1014897 PubMed PMID: 36439208; PubMed Central PMCID: PMCPMC9683476","journal-title":"Front Cell Infect Microbiol"},{"issue":"4","key":"6323_CR75","doi-asserted-by":"publisher","first-page":"e0054921","DOI":"10.1128\/mSphere.00549-21","volume":"6","author":"EJ Strong","year":"2021","unstructured":"Strong EJ, Ng TW, Porcelli SA et al (2021) Mycobacterium tuberculosis PE_PGRS20 and PE_PGRS47 Proteins Inhibit Autophagy by Interaction with Rab1A. mSphere 6(4):e0054921. https:\/\/doi.org\/10.1128\/mSphere.00549-21 PubMed PMID: 34346699; PubMed Central PMCID: PMCPMC8386380","journal-title":"mSphere"},{"issue":"3","key":"6323_CR76","doi-asserted-by":"publisher","first-page":"e0297421","DOI":"10.1128\/mbio.02974-21","volume":"13","author":"EJ Strong","year":"2022","unstructured":"Strong EJ, Wang J, Ng TW et al (2022) Mycobacterium tuberculosis PPE51 Inhibits Autophagy by Suppressing Toll-Like Receptor 2-Dependent Signaling. mBio 13(3):e0297421. https:\/\/doi.org\/10.1128\/mbio.02974-21 PubMed PMID: 35467412; PubMed Central PMCID: PMCPMC9239179","journal-title":"mBio"},{"issue":"6110","key":"6323_CR77","doi-asserted-by":"publisher","first-page":"1072","DOI":"10.1126\/science.1227026","volume":"338","author":"A Choy","year":"2012","unstructured":"Choy A, Dancourt J, Mugo B et al (2012) The Legionella effector RavZ inhibits host autophagy through irreversible Atg8 deconjugation. Science 338(6110):1072\u20131076. https:\/\/doi.org\/10.1126\/science.1227026 PubMed PMID: 23112293; PubMed Central PMCID: PMCPMC3682818","journal-title":"Science"},{"issue":"1","key":"6323_CR78","doi-asserted-by":"publisher","first-page":"70","DOI":"10.1080\/15548627.2016.1243199","volume":"13","author":"DH Kwon","year":"2017","unstructured":"Kwon DH, Kim S, Jung YO et al (2017) The 1:2 complex between RavZ and LC3 reveals a mechanism for deconjugation of LC3 on the phagophore membrane. Autophagy 13(1):70\u201381 PubMed PMID: 27791457; PubMed Central PMCID: PMCPMC5240826","journal-title":"Autophagy"},{"key":"6323_CR79","doi-asserted-by":"publisher","first-page":"384","DOI":"10.3389\/fcimb.2017.00384","volume":"7","author":"T Kubori","year":"2017","unstructured":"Kubori T, Bui XT, Hubber A et al (2017) Legionella RavZ Plays a Role in Preventing Ubiquitin Recruitment to Bacteria-Containing Vacuoles. Front Cell Infect Microbiol 7:384. https:\/\/doi.org\/10.3389\/fcimb.2017.00384 PubMed PMID: 28971069; PubMed Central PMCID: PMCPMC5609559","journal-title":"Front Cell Infect Microbiol"},{"issue":"7","key":"6323_CR80","doi-asserted-by":"publisher","first-page":"8295","DOI":"10.18632\/oncotarget.6989","volume":"7","author":"Y Chu","year":"2016","unstructured":"Chu Y, Gao S, Wang T et al (2016) A novel contribution of spvB to pathogenesis of Salmonella Typhimurium by inhibiting autophagy in host cells. Oncotarget 7(7):8295\u20138309. https:\/\/doi.org\/10.18632\/oncotarget.6989 PubMed PMID: 26811498; PubMed Central PMCID: PMCPMC4884993","journal-title":"Oncotarget"},{"key":"6323_CR81","doi-asserted-by":"publisher","first-page":"252","DOI":"10.1016\/j.fsi.2015.12.033","volume":"49","author":"YY Li","year":"2016","unstructured":"Li YY, Wang T, Gao S et al (2016) Salmonella plasmid virulence gene spvB enhances bacterial virulence by inhibiting autophagy in a zebrafish infection model. Fish Shellfish Immunol 49:252\u2013259 .033. PubMed PMID: 26723267","journal-title":"Fish Shellfish Immunol"},{"issue":"25","key":"6323_CR82","doi-asserted-by":"publisher","first-page":"9662","DOI":"10.1074\/jbc.M117.811737","volume":"293","author":"ZZ Feng","year":"2018","unstructured":"Feng ZZ, Jiang AJ, Mao AW et al (2018) The Salmonella effectors SseF and SseG inhibit Rab1A-mediated autophagy to facilitate intracellular bacterial survival and replication. J Biol Chem 293(25):9662\u20139673. https:\/\/doi.org\/10.1074\/jbc.M117.811737 PubMed PMID: 29610274; PubMed Central PMCID: PMCPMC6016468","journal-title":"J Biol Chem"},{"key":"6323_CR83","doi-asserted-by":"publisher","unstructured":"Luis LB, Ana GT, Carlos GE et al (2022) Salmonella Promotes Its Own Survival in B Cells by Inhibiting Autophagy. Cells 11(13). https:\/\/doi.org\/10.3390\/cells11132061 PubMed PMID: 35805144; PubMed Central PMCID: PMCPMC9266210","DOI":"10.3390\/cells11132061"},{"issue":"6","key":"6323_CR84","doi-asserted-by":"publisher","first-page":"e1002743","DOI":"10.1371\/journal.ppat.1002743","volume":"8","author":"FS Mesquita","year":"2012","unstructured":"Mesquita FS, Thomas M, Sachse M et al (2012) The Salmonella deubiquitinase SseL inhibits selective autophagy of cytosolic aggregates. PLoS Pathog 8(6):e1002743. https:\/\/doi.org\/10.1371\/journal.ppat.1002743 PubMed PMID: 22719249; PubMed Central PMCID: PMCPMC3375275","journal-title":"PLoS Pathog"},{"issue":"12","key":"6323_CR85","doi-asserted-by":"publisher","first-page":"1671","DOI":"10.1016\/j.chom.2022.08.008","volume":"30","author":"SC Walsh","year":"2022","unstructured":"Walsh SC, Reitano JR, Dickinson MS et al (2022) The bacterial effector GarD shields Chlamydia trachomatis inclusions from RNF213-mediated ubiquitylation and destruction. Cell Host Microbe 30(12):1671\u2013 PubMed PMID: WOS:000910200300009","journal-title":"Cell Host Microbe"},{"key":"6323_CR86","doi-asserted-by":"publisher","unstructured":"Szczesna M, Huang YZ, Lacoursiere RE et al (2024) Bacterial esterases reverse lipopolysaccharide ubiquitylation to block host immunity. Cell Host Microbe 32(6). https:\/\/doi.org\/10.1016\/j.chom.2024.04.012. PubMed PMID: WOS:001254815400001","DOI":"10.1016\/j.chom.2024.04"},{"issue":"9","key":"6323_CR87","doi-asserted-by":"publisher","first-page":"1741","DOI":"10.1038\/s41594-025-01530-8","volume":"32","author":"K Naydenova","year":"2025","unstructured":"Naydenova K, Boyle KB, Pathe C et al (2025) Shigella flexneri evades LPS ubiquitylation through IpaH1.4-mediated degradation of RNF213. Nat Struct Mol Biol 32(9):1741\u20131751. https:\/\/doi.org\/10.1038\/s41594-025-01530-8 PubMed PMID: 40205224; PubMed Central PMCID: PMCPMC12440826","journal-title":"Nat Struct Mol Biol"},{"key":"6323_CR88","doi-asserted-by":"publisher","first-page":"RP102714","DOI":"10.7554\/eLife.102714","volume":"13","author":"L Saavedra-Sanchez","year":"2025","unstructured":"Saavedra-Sanchez L, Dickinson MS, Apte SS et al (2025) The Shigella flexneri effector IpaH1.4 facilitates RNF213 degradation and protects cytosolic bacteria against interferon-induced ubiquitylation. Elife 13:RP102714. https:\/\/doi.org\/10.7554\/eLife.102714 PubMed PMID: 41313637; PubMed Central PMCID: PMCPMC12662631","journal-title":"Elife"},{"issue":"1","key":"6323_CR89","doi-asserted-by":"publisher","first-page":"3099","DOI":"10.1038\/s41467-025-58432-y","volume":"16","author":"X Zhou","year":"2025","unstructured":"Zhou X, Zhang H, Wang Y et al (2025) Shigella effector IpaH1.4 subverts host E3 ligase RNF213 to evade antibacterial immunity. Nat Commun 16(1):3099. https:\/\/doi.org\/10.1038\/s41467-025-58432-y PubMed PMID: 40164614; PubMed Central PMCID: PMCPMC11958729","journal-title":"Nat Commun"},{"issue":"3","key":"6323_CR90","doi-asserted-by":"publisher","first-page":"576","DOI":"10.1080\/15548627.2021.1938912","volume":"18","author":"P Ge","year":"2022","unstructured":"Ge P, Lei Z, Yu Y et al (2022) M. tuberculosis PknG manipulates host autophagy flux to promote pathogen intracellular survival. Autophagy 18(3):576\u2013594 PubMed PMID: 34092182; PubMed Central PMCID: PMCPMC9037497","journal-title":"Autophagy"},{"issue":"48","key":"6323_CR91","doi-asserted-by":"publisher","first-page":"19371","DOI":"10.1073\/pnas.1109201108","volume":"108","author":"D Wong","year":"2011","unstructured":"Wong D, Bach H, Sun J et al (2011) Mycobacterium tuberculosis protein tyrosine phosphatase (PtpA) excludes host vacuolar-H+-ATPase to inhibit phagosome acidification. Proc Natl Acad Sci U S A 108(48):19371\u201319376. https:\/\/doi.org\/10.1073\/pnas.1109201108 PubMed PMID: 22087003; PubMed Central PMCID: PMCPMC3228452","journal-title":"Proc Natl Acad Sci U S A"},{"issue":"9","key":"6323_CR92","doi-asserted-by":"publisher","first-page":"5437","DOI":"10.1073\/pnas.0737613100","volume":"100","author":"RA Fratti","year":"2003","unstructured":"Fratti RA, Chua J, Vergne I et al (2003) Mycobacterium tuberculosis glycosylated phosphatidylinositol causes phagosome maturation arrest. Proc Natl Acad Sci U S A 100(9):5437\u20135442. https:\/\/doi.org\/10.1073\/pnas.0737613100 PubMed PMID: 12702770; PubMed Central PMCID: PMCPMC154363","journal-title":"Proc Natl Acad Sci U S A"},{"issue":"11","key":"6323_CR93","doi-asserted-by":"publisher","first-page":"e0118824","DOI":"10.1128\/spectrum.01188-24","volume":"12","author":"Z Jiang","year":"2024","unstructured":"Jiang Z, Zhen J, Abulikena Y et al (2024) Mycobacterium tuberculosis VII secretion system effector molecule Rv2347c blocks the maturation of phagosomes and activates the STING\/TBK1 signaling pathway to inhibit cell autophagy. Microbiol Spectr 12(11):e0118824. https:\/\/doi.org\/10.1128\/spectrum.01188-24 PubMed PMID: 39313213; PubMed Central PMCID: PMCPMC11537087","journal-title":"Microbiol Spectr"},{"issue":"20","key":"6323_CR94","doi-asserted-by":"publisher","first-page":"e2423292122","DOI":"10.1073\/pnas.2423292122","volume":"122","author":"C Santamaria","year":"2025","unstructured":"Santamaria C, Biegas KJ, Lim PN et al (2025) Trehalose dimycolate inhibits phagosome maturation and promotes intracellular M. tuberculosis growth via noncanonical SNARE interactions. Proc Natl Acad Sci U S A 122(20):e2423292122. https:\/\/doi.org\/10.1073\/pnas.2423292122 PubMed PMID: 40354525; PubMed Central PMCID: PMCPMC12107153","journal-title":"Proc Natl Acad Sci U S A"},{"issue":"1","key":"6323_CR95","doi-asserted-by":"publisher","first-page":"e8769","DOI":"10.1371\/journal.pone.0008769","volume":"5","author":"J Sun","year":"2010","unstructured":"Sun J, Wang X, Lau A et al (2010) Mycobacterial nucleoside diphosphate kinase blocks phagosome maturation in murine RAW 264.7 macrophages. PLoS ONE 5(1):e8769. https:\/\/doi.org\/10.1371\/journal.pone.0008769 PubMed PMID: 20098737; PubMed Central PMCID: PMCPMC2808246","journal-title":"PLoS ONE"},{"issue":"11","key":"6323_CR96","doi-asserted-by":"publisher","first-page":"4033","DOI":"10.1073\/pnas.0409716102","volume":"102","author":"I Vergne","year":"2005","unstructured":"Vergne I, Chua J, Lee HH et al (2005) Mechanism of phagolysosome biogenesis block by viable Mycobacterium tuberculosis. Proc Natl Acad Sci U S A 102(11):4033\u20134038. https:\/\/doi.org\/10.1073\/pnas.0409716102 PubMed PMID: 15753315; PubMed Central PMCID: PMCPMC554822","journal-title":"Proc Natl Acad Sci U S A"},{"key":"6323_CR97","doi-asserted-by":"publisher","unstructured":"Vazquez CL, Bianco MV, Blanco FC et al (2017) Mycobacterium bovis Requires P27 (LprG) To Arrest Phagosome Maturation and Replicate within Bovine Macrophages. Infect Immun 85(3). https:\/\/doi.org\/10.1128\/IAI.00720-16 PubMed PMID: 28031264; PubMed Central PMCID: PMCPMC5328499","DOI":"10.1128\/IAI.00720-16"},{"issue":"1","key":"6323_CR98","doi-asserted-by":"publisher","first-page":"e0322122","DOI":"10.1128\/mbio.03221-22","volume":"14","author":"RJ Cain","year":"2023","unstructured":"Cain RJ, Scortti M, Monzo HJ et al (2023) Listeria InlB Expedites Vacuole Escape and Intracellular Proliferation by Promoting Rab7 Recruitment via Vps34. mBio 14(1):e0322122. https:\/\/doi.org\/10.1128\/mbio.03221-22 PubMed PMID: 36656016; PubMed Central PMCID: PMCPMC9973280","journal-title":"mBio"},{"issue":"9","key":"6323_CR99","doi-asserted-by":"publisher","first-page":"1357","DOI":"10.4161\/auto.20881","volume":"8","author":"A Romagnoli","year":"2012","unstructured":"Romagnoli A, Etna MP, Giacomini E et al (2012) ESX-1 dependent impairment of autophagic flux by Mycobacterium tuberculosis in human dendritic cells. Autophagy 8(9):1357\u20131370. https:\/\/doi.org\/10.4161\/auto.20881 PubMed PMID: 22885411; PubMed Central PMCID: PMCPMC3442882","journal-title":"Autophagy"},{"issue":"10","key":"6323_CR100","doi-asserted-by":"publisher","first-page":"e1004471","DOI":"10.1371\/journal.ppat.1004471","volume":"10","author":"S Shukla","year":"2014","unstructured":"Shukla S, Richardson ET, Athman JJ et al (2014) Mycobacterium tuberculosis lipoprotein LprG binds lipoarabinomannan and determines its cell envelope localization to control phagolysosomal fusion. PLoS Pathog 10(10):e1004471. https:\/\/doi.org\/10.1371\/journal.ppat.1004471 PubMed PMID: 25356793; PubMed Central PMCID: PMCPMC4214796","journal-title":"PLoS Pathog"},{"issue":"5","key":"6323_CR101","doi-asserted-by":"publisher","first-page":"316","DOI":"10.1016\/j.chom.2008.03.008","volume":"3","author":"H Bach","year":"2008","unstructured":"Bach H, Papavinasasundaram KG, Wong D et al (2008) Mycobacterium tuberculosis virulence is mediated by PtpA dephosphorylation of human vacuolar protein sorting 33B. Cell Host Microbe 3(5):316\u2013322 PubMed PMID: 18474358","journal-title":"Cell Host Microbe"},{"key":"6323_CR102","doi-asserted-by":"crossref","unstructured":"Chatterjee R, Chaudhuri D, Setty SRG et al (2023) Deceiving the big eaters: Salmonella Typhimurium SopB subverts host cell xenophagy in macrophages via dual mechanisms. Microbes Infect 25(6):105128 PubMed PMID: 37019426","DOI":"10.1016\/j.micinf.2023.105128"},{"issue":"3","key":"6323_CR103","doi-asserted-by":"publisher","first-page":"e02567","DOI":"10.1128\/mBio.02567-14","volume":"6","author":"FX Campbell-Valois","year":"2015","unstructured":"Campbell-Valois FX, Sachse M, Sansonetti PJ et al (2015) Escape of Actively Secreting Shigella flexneri from ATG8\/LC3-Positive Vacuoles Formed during Cell-To-Cell Spread Is Facilitated by IcsB and VirA. mBio 6(3):e02567\u2013e02514. https:\/\/doi.org\/10.1128\/mBio.02567-14 PubMed PMID: 26015503; PubMed Central PMCID: PMCPMC4447254","journal-title":"mBio"},{"issue":"8","key":"6323_CR104","doi-asserted-by":"publisher","first-page":"1220","DOI":"10.4161\/auto.5.8.10177","volume":"5","author":"Y Yoshikawa","year":"2009","unstructured":"Yoshikawa Y, Ogawa M, Hain T et al (2009) Listeria monocytogenes ActA is a key player in evading autophagic recognition. Autophagy 5(8):1220\u20131221. https:\/\/doi.org\/10.4161\/auto.5.8.10177 PubMed PMID: 19855178","journal-title":"Autophagy"},{"issue":"10","key":"6323_CR105","doi-asserted-by":"publisher","first-page":"1233","DOI":"10.1038\/ncb1967","volume":"11","author":"Y Yoshikawa","year":"2009","unstructured":"Yoshikawa Y, Ogawa M, Hain T et al (2009) Listeria monocytogenes ActA-mediated escape from autophagic recognition. Nat Cell Biol 11(10):1233\u20131240. https:\/\/doi.org\/10.1038\/ncb1967 PubMed PMID: 19749745","journal-title":"Nat Cell Biol"},{"issue":"1","key":"6323_CR106","doi-asserted-by":"publisher","first-page":"33","DOI":"10.1016\/j.chom.2011.12.002","volume":"11","author":"T Starr","year":"2012","unstructured":"Starr T, Child R, Wehrly TD et al (2012) Selective subversion of autophagy complexes facilitates completion of the Brucella intracellular cycle. Cell Host Microbe 11(1):33\u201345. https:\/\/doi.org\/10.1016\/j.chom.2011.12.002 PubMed PMID: 22264511; PubMed Central PMCID: PMCPMC3266535","journal-title":"Cell Host Microbe"},{"key":"6323_CR107","doi-asserted-by":"publisher","unstructured":"Xu Y, Zhou P, Cheng S et al (2019) A Bacterial Effector Reveals the V-ATPase-ATG16L1 Axis that Initiates Xenophagy. Cell. ;178(3):552\u2013566 e20. https:\/\/doi.org\/10.1016\/j.cell.2019.06.007. PubMed PMID: 31327526","DOI":"10.1016\/j.cell.2019.06.007"},{"issue":"10","key":"6323_CR108","doi-asserted-by":"publisher","first-page":"722","DOI":"10.1038\/nri3532","volume":"13","author":"V Deretic","year":"2013","unstructured":"Deretic V, Saitoh T, Akira S (2013) Autophagy in infection, inflammation and immunity. Nat Rev Immunol 13(10):722\u2013737. https:\/\/doi.org\/10.1038\/nri3532 PubMed PMID: 24064518; PubMed Central PMCID: PMCPMC5340150","journal-title":"Nat Rev Immunol"},{"issue":"11","key":"6323_CR109","doi-asserted-by":"publisher","first-page":"e30416","DOI":"10.1002\/jcb.30416","volume":"125","author":"U Gestal-Mato","year":"2024","unstructured":"Gestal-Mato U, Herhaus L (2024) Autophagy-dependent regulation of MHC-I molecule presentation. J Cell Biochem 125(11):e30416. https:\/\/doi.org\/10.1002\/jcb.30416 PubMed PMID: 37126231","journal-title":"J Cell Biochem"},{"issue":"7330","key":"6323_CR110","doi-asserted-by":"publisher","first-page":"323","DOI":"10.1038\/nature09782","volume":"469","author":"B Levine","year":"2011","unstructured":"Levine B, Mizushima N, Virgin HW (2011) Autophagy in immunity and inflammation. Nature 469(7330):323\u2013335. https:\/\/doi.org\/10.1038\/nature09782 PubMed PMID: 21248839; PubMed Central PMCID: PMCPMC3131688","journal-title":"Nature"},{"issue":"5","key":"6323_CR111","doi-asserted-by":"publisher","first-page":"457","DOI":"10.1016\/j.chom.2012.03.008","volume":"11","author":"JJ Kim","year":"2012","unstructured":"Kim JJ, Lee HM, Shin DM et al (2012) Host cell autophagy activated by antibiotics is required for their effective antimycobacterial drug action. Cell Host Microbe 11(5):457\u2013468 PubMed PMID: 22607799","journal-title":"Cell Host Microbe"}],"container-title":["Cellular and Molecular Life Sciences"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/link.springer.com\/article\/10.1007\/s00018-026-06323-w","content-type":"text\/html","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/link.springer.com\/content\/pdf\/10.1007\/s00018-026-06323-w.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/link.springer.com\/content\/pdf\/10.1007\/s00018-026-06323-w.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2026,10,1]],"date-time":"2026-10-01T22:02:33Z","timestamp":1790892153000},"score":1,"resource":{"primary":{"URL":"https:\/\/link.springer.com\/10.1007\/s00018-026-06323-w"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2026,7,8]]},"references-count":111,"journal-issue":{"issue":"1","published-online":{"date-parts":[[2026,12]]}},"alternative-id":["6323"],"URL":"https:\/\/doi.org\/10.1007\/s00018-026-06323-w","relation":{},"ISSN":["1420-9071"],"issn-type":[{"value":"1420-9071","type":"electronic"}],"subject":[],"published":{"date-parts":[[2026,7,8]]},"assertion":[{"value":"25 March 2026","order":1,"name":"received","label":"Received","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"15 June 2026","order":2,"name":"accepted","label":"Accepted","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"8 July 2026","order":3,"name":"first_online","label":"First Online","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"No potential conflict of interest was reported by the authors.","order":1,"name":"Ethics","label":"Conflict of interest","group":{"name":"EthicsHeading","label":"Declarations"}}],"article-number":"353"}}