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To determine the prevalence of SNB sensitivity genes in a contemporary US hard winter wheat (HWW), we evaluated a panel of 619 breeding lines and cultivars against five\n                      <jats:italic>P. nodorum<\/jats:italic>\n                      isolates and five necrotrophic effectors (NEs), SnToxA, SnTox1, SnTox3, SnTox267, and SnTox5, and genotyped the panel using genotyping-by-sequencing (GBS) markers and diagnostic kompetetive allele-specific PCR (KASP) markers for the sensitivity genes\n                      <jats:italic>Tsn1-B1<\/jats:italic>\n                      ,\n                      <jats:italic>Snn1-B1<\/jats:italic>\n                      , and\n                      <jats:italic>Snn3-B1\/B2<\/jats:italic>\n                      . GBS analysis identified 34,357 GBS-single-nucleotide polymorphism (SNP) markers\n                      <jats:italic>.<\/jats:italic>\n                      Evaluations against\n                      <jats:italic>P. nodorum<\/jats:italic>\n                      isolates showed that 40\u201367% of the genotypes were susceptible in the panel. Toxin infiltration assays showed that 54%, 2%, 37%, 13%, and 15% of the genotypes were sensitive to SnToxA, SnTox1, SnTox3, SnTox267, and SnTox5, respectively. Diagnostic KASP markers for\n                      <jats:italic>Tsn1-B1<\/jats:italic>\n                      ,\n                      <jats:italic>Snn1-B1<\/jats:italic>\n                      , and\n                      <jats:italic>Snn3-B1\/B2<\/jats:italic>\n                      showed prediction accuracies of 98%, 75%, and 92% for the corresponding effectors SnToxA, SnTox1, and SnTox3, respectively. Genome-wide association studies (GWAS) not only confirmed the presence of the previously characterized sensitivity genes\n                      <jats:italic>Tsn1-B1<\/jats:italic>\n                      ,\n                      <jats:italic>Snn1-B1<\/jats:italic>\n                      ,\n                      <jats:italic>Snn2<\/jats:italic>\n                      ,\n                      <jats:italic>Snn3-B1\/B2<\/jats:italic>\n                      , and\n                      <jats:italic>Snn5-B1<\/jats:italic>\n                      , but also identified new loci to be associated with responses to\n                      <jats:italic>P. nodorum<\/jats:italic>\n                      isolates and NEs. Of these,\n                      <jats:italic>Qsnb.osu-2AS<\/jats:italic>\n                      on chromosome 2AS was associated with responses to all five isolates. KASP markers linked to\n                      <jats:italic>Snn5-B1<\/jats:italic>\n                      ,\n                      <jats:italic>Snn2<\/jats:italic>\n                      , and\n                      <jats:italic>Qsnb.osu-2AS<\/jats:italic>\n                      were developed for potential use in marker-assisted selection. These findings should guide breeding for SNB resistance in hard winter wheat.\n                    <\/jats:p>\n                  <\/jats:sec>","DOI":"10.1007\/s00122-026-05359-7","type":"journal-article","created":{"date-parts":[[2026,9,15]],"date-time":"2026-09-15T14:56:27Z","timestamp":1789484187000},"update-policy":"https:\/\/doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":0,"title":["Identification of septoria nodorum blotch susceptibility genes in hard winter wheat"],"prefix":"10.1007","volume":"139","author":[{"given":"Anju Maan","family":"Ara","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Danielle J.","family":"Holmes","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Timothy L.","family":"Friesen","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Brett F.","family":"Carver","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Guihua","family":"Bai","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Paul St.","family":"Amand","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Amy","family":"Bernado","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Rajat","family":"Sharma","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Meriem","family":"Aoun","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"297","published-online":{"date-parts":[[2026,9,15]]},"reference":[{"key":"5359_CR1","doi-asserted-by":"publisher","first-page":"94","DOI":"10.1094\/PHYTO-02-11-0040","volume":"102","author":"NS Abeysekara","year":"2012","unstructured":"Abeysekara NS, Faris JD, Chao S, McClean PE, Friesen TL (2012) Whole-genome QTL analysis of Stagonospora nodorum blotch resistance and validation of the SnTox4\u2013Snn4 interaction in hexaploid wheat. 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