{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,4,1]],"date-time":"2026-04-01T07:10:04Z","timestamp":1775027404503,"version":"3.50.1"},"reference-count":72,"publisher":"Springer Science and Business Media LLC","issue":"9","license":[{"start":{"date-parts":[[2021,8,11]],"date-time":"2021-08-11T00:00:00Z","timestamp":1628640000000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.springernature.com\/gp\/researchers\/text-and-data-mining"},{"start":{"date-parts":[[2021,8,11]],"date-time":"2021-08-11T00:00:00Z","timestamp":1628640000000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/www.springernature.com\/gp\/researchers\/text-and-data-mining"}],"funder":[{"DOI":"10.13039\/501100002349","name":"Academy of Scientific Research and Technology","doi-asserted-by":"publisher","award":["3046"],"award-info":[{"award-number":["3046"]}],"id":[{"id":"10.13039\/501100002349","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":["link.springer.com"],"crossmark-restriction":false},"short-container-title":["Arch Microbiol"],"published-print":{"date-parts":[[2021,11]]},"DOI":"10.1007\/s00203-021-02511-3","type":"journal-article","created":{"date-parts":[[2021,8,11]],"date-time":"2021-08-11T08:02:55Z","timestamp":1628668975000},"page":"5321-5331","update-policy":"https:\/\/doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":11,"title":["Novel PhoH-encoding vibriophages with lytic activity against environmental Vibrio\u00a0strains"],"prefix":"10.1007","volume":"203","author":[{"ORCID":"https:\/\/orcid.org\/0000-0002-9425-8955","authenticated-orcid":false,"given":"Alice N.","family":"Maina","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Francis B.","family":"Mwaura","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Miriam","family":"Jumba","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Kristopher","family":"Kiefts","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Hanzada T.","family":"Nour El-Din","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Ramy K.","family":"Aziz","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"297","published-online":{"date-parts":[[2021,8,11]]},"reference":[{"key":"2511_CR1","doi-asserted-by":"publisher","first-page":"66","DOI":"10.4161\/bact.1.2.15845","volume":"1","author":"ST Abedon","year":"2011","unstructured":"Abedon ST, Kuhl SJ, Blasdel BG, Kutter EM (2011) Phage treatment of human infections. Bacteriophage 1:66\u201385. https:\/\/doi.org\/10.4161\/bact.1.2.15845","journal-title":"Bacteriophage"},{"key":"2511_CR2","doi-asserted-by":"publisher","first-page":"4470","DOI":"10.1128\/aem.00878-14","volume":"80","author":"EM Adriaenssens","year":"2014","unstructured":"Adriaenssens EM, Cowan DA (2014) Using signature genes as tools to assess environmental viral ecology and diversity. Appl Environ Microbiol 80:4470\u20134480. https:\/\/doi.org\/10.1128\/aem.00878-14","journal-title":"Appl Environ Microbiol"},{"key":"2511_CR3","doi-asserted-by":"publisher","DOI":"10.1128\/microbiolspec.OH-0003-2012","author":"S Almagro-Moreno","year":"2013","unstructured":"Almagro-Moreno S, Taylor RK (2013) Cholera: environmental reservoirs and impact on disease transmission. Microbiol Spectr. https:\/\/doi.org\/10.1128\/microbiolspec.OH-0003-2012","journal-title":"Microbiol Spectr"},{"key":"2511_CR4","doi-asserted-by":"publisher","first-page":"403","DOI":"10.1016\/s0022-2836(05)80360-2","volume":"215","author":"SF Altschul","year":"1990","unstructured":"Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ (1990) Basic local alignment search tool. J Mol Biol 215:403\u2013410. https:\/\/doi.org\/10.1016\/s0022-2836(05)80360-2","journal-title":"J Mol Biol"},{"key":"2511_CR5","doi-asserted-by":"publisher","first-page":"75","DOI":"10.1186\/1471-2164-9-75","volume":"9","author":"RK Aziz","year":"2008","unstructured":"Aziz RK, Bartels D, Best AA et al (2008) The RAST Server: rapid annotations using subsystems technology. BMC Genomics 9:75. https:\/\/doi.org\/10.1186\/1471-2164-9-75","journal-title":"BMC Genomics"},{"key":"2511_CR6","doi-asserted-by":"publisher","first-page":"381","DOI":"10.3389\/fmicb.2015.00381","volume":"6","author":"RK Aziz","year":"2015","unstructured":"Aziz RK, Dwivedi B, Akhter S, Breitbart M, Edwards RA (2015) Multidimensional metrics for estimating phage abundance, distribution, gene density, and sequence coverage in metagenomes. Front Microbiol 6:381. https:\/\/doi.org\/10.3389\/fmicb.2015.00381","journal-title":"Front Microbiol"},{"key":"2511_CR7","doi-asserted-by":"publisher","first-page":"197","DOI":"10.1007\/978-1-4939-7343-9_15","volume":"1681","author":"RK Aziz","year":"2018","unstructured":"Aziz RK, Ackermann HW, Petty NK, Kropinski AM (2018) Essential steps in characterizing bacteriophages: biology, taxonomy, and genome analysis. Methods Mol Biol 1681:197\u2013215. https:\/\/doi.org\/10.1007\/978-1-4939-7343-9_15","journal-title":"Methods Mol Biol"},{"key":"2511_CR8","doi-asserted-by":"publisher","first-page":"2071","DOI":"10.1111\/j.1462-2920.2011.02685.x","volume":"14","author":"AC Baudoux","year":"2012","unstructured":"Baudoux AC, Hendrix RW, Lander GC et al (2012) Genomic and functional analysis of Vibrio phage SIO-2 reveals novel insights into ecology and evolution of marine siphoviruses. Environ Microbiol 14:2071\u20132086. https:\/\/doi.org\/10.1111\/j.1462-2920.2011.02685.x","journal-title":"Environ Microbiol"},{"key":"2511_CR9","doi-asserted-by":"publisher","first-page":"786","DOI":"10.1093\/infdis\/jiy563","volume":"219","author":"S Bhandare","year":"2019","unstructured":"Bhandare S, Colom J, Baig A et al (2019) Reviving phage therapy for the treatment of cholera. J Infect Dis 219:786\u2013794. https:\/\/doi.org\/10.1093\/infdis\/jiy563","journal-title":"J Infect Dis"},{"key":"2511_CR10","doi-asserted-by":"publisher","first-page":"291","DOI":"10.1186\/1743-422x-7-291","volume":"7","author":"MR Clokie","year":"2010","unstructured":"Clokie MR, Millard AD, Mann NH (2010) T4 genes in the marine ecosystem: studies of the T4-like cyanophages and their role in marine ecology. Virol J 7:291. https:\/\/doi.org\/10.1186\/1743-422x-7-291","journal-title":"Virol J"},{"key":"2511_CR11","doi-asserted-by":"publisher","first-page":"64","DOI":"10.1002\/mbo3.52","volume":"2","author":"Y Cohen","year":"2013","unstructured":"Cohen Y, Joseph Pollock F, Rosenberg E, Bourne DG (2013) Phage therapy treatment of the coral pathogen Vibrio coralliilyticus. Microbiol Open 2:64\u201374. https:\/\/doi.org\/10.1002\/mbo3.52","journal-title":"Microbiol Open"},{"key":"2511_CR12","doi-asserted-by":"publisher","first-page":"1321","DOI":"10.1093\/molbev\/msn080","volume":"25","author":"AM Comeau","year":"2008","unstructured":"Comeau AM, Krisch HM (2008) The capsid of the T4 phage superfamily: the evolution, diversity, and structure of some of the most prevalent proteins in the biosphere. Mol Biol Evol 25:1321\u20131332. https:\/\/doi.org\/10.1093\/molbev\/msn080","journal-title":"Mol Biol Evol"},{"key":"2511_CR13","doi-asserted-by":"publisher","first-page":"D606","DOI":"10.1093\/nar\/gkz943","volume":"48","author":"JJ Davis","year":"2020","unstructured":"Davis JJ, Wattam AR, Aziz RK et al (2020) The PATRIC Bioinformatics Resource Center: expanding data and analysis capabilities. Nucleic Acids Res 48:D606-d612. https:\/\/doi.org\/10.1093\/nar\/gkz943","journal-title":"Nucleic Acids Res"},{"issue":"Suppl 1","key":"2511_CR14","doi-asserted-by":"publisher","first-page":"A31","DOI":"10.1016\/j.vaccine.2019.07.078","volume":"38","author":"J Deen","year":"2020","unstructured":"Deen J, Mengel MA, Clemens JD (2020) Epidemiology of cholera. Vaccine 38(Suppl 1):A31-a40. https:\/\/doi.org\/10.1016\/j.vaccine.2019.07.078","journal-title":"Vaccine"},{"key":"2511_CR15","doi-asserted-by":"publisher","first-page":"865","DOI":"10.1139\/cjm-2017-0030","volume":"63","author":"A El-Shibiny","year":"2017","unstructured":"El-Shibiny A, El-Sahhar S (2017) Bacteriophages: the possible solution to treat infections caused by pathogenic bacteria. Can J Microbiol 63:865\u2013879. https:\/\/doi.org\/10.1139\/cjm-2017-0030","journal-title":"Can J Microbiol"},{"key":"2511_CR16","doi-asserted-by":"publisher","first-page":"6119","DOI":"10.1073\/pnas.0502069102","volume":"102","author":"SM Faruque","year":"2005","unstructured":"Faruque SM, Islam MJ, Ahmad QS et al (2005a) Self-limiting nature of seasonal cholera epidemics: role of host-mediated amplification of phage. Proc Natl Acad Sci USA 102:6119\u20136124. https:\/\/doi.org\/10.1073\/pnas.0502069102","journal-title":"Proc Natl Acad Sci USA"},{"key":"2511_CR17","doi-asserted-by":"publisher","first-page":"1702","DOI":"10.1073\/pnas.0408992102","volume":"102","author":"SM Faruque","year":"2005","unstructured":"Faruque SM, Naser IB, Islam MJ et al (2005b) Seasonal epidemics of cholera inversely correlate with the prevalence of environmental cholera phages. Proc Natl Acad Sci USA 102:1702\u20131707. https:\/\/doi.org\/10.1073\/pnas.0408992102","journal-title":"Proc Natl Acad Sci USA"},{"key":"2511_CR18","doi-asserted-by":"publisher","DOI":"10.3390\/genes7100080","author":"EB Gao","year":"2016","unstructured":"Gao EB, Huang Y, Ning D (2016) Metabolic genes within cyanophage genomes: implications for diversity and evolution. Genes (basel). https:\/\/doi.org\/10.3390\/genes7100080","journal-title":"Genes (basel)"},{"key":"2511_CR19","doi-asserted-by":"publisher","first-page":"947","DOI":"10.1007\/s00705-020-04535-4","volume":"165","author":"M Gao","year":"2020","unstructured":"Gao M, Qin Y, Fan H et al (2020) Characteristics and complete genome sequence of the virulent Vibrio alginolyticus phage VAP7, isolated in Hainan, China. Arch Virol 165:947\u2013953. https:\/\/doi.org\/10.1007\/s00705-020-04535-4","journal-title":"Arch Virol"},{"key":"2511_CR20","doi-asserted-by":"publisher","first-page":"7730","DOI":"10.1128\/aem.05531-11","volume":"77","author":"DB Goldsmith","year":"2011","unstructured":"Goldsmith DB, Crosti G, Dwivedi B et al (2011) Development of phoH as a novel signature gene for assessing marine phage diversity. Appl Environ Microbiol 77:7730\u20137739. https:\/\/doi.org\/10.1128\/aem.05531-11","journal-title":"Appl Environ Microbiol"},{"key":"2511_CR21","doi-asserted-by":"publisher","first-page":"504","DOI":"10.1016\/s0966-842x(00)01863-1","volume":"8","author":"RW Hendrix","year":"2000","unstructured":"Hendrix RW, Lawrence JG, Hatfull GF, Casjens S (2000) The origins and ongoing evolution of viruses. Trends Microbiol 8:504\u2013508. https:\/\/doi.org\/10.1016\/s0966-842x(00)01863-1","journal-title":"Trends Microbiol"},{"key":"2511_CR22","doi-asserted-by":"publisher","first-page":"253","DOI":"10.1016\/s0923-2508(03)00068-8","volume":"154","author":"RW Hendrix","year":"2003","unstructured":"Hendrix RW, Hatfull GF, Smith MC (2003) Bacteriophages with tails: chasing their origins and evolution. Res Microbiol 154:253\u2013257. https:\/\/doi.org\/10.1016\/s0923-2508(03)00068-8","journal-title":"Res Microbiol"},{"key":"2511_CR23","doi-asserted-by":"publisher","first-page":"37956","DOI":"10.1038\/srep37956","volume":"6","author":"MM Hoque","year":"2016","unstructured":"Hoque MM, Naser IB, Bari SM, Zhu J, Mekalanos JJ, Faruque SM (2016) Quorum regulated resistance of Vibrio cholerae against environmental bacteriophages. Sci Rep 6:37956. https:\/\/doi.org\/10.1038\/srep37956","journal-title":"Sci Rep"},{"key":"2511_CR24","doi-asserted-by":"publisher","first-page":"680","DOI":"10.1093\/bioinformatics\/btq003","volume":"26","author":"Y Huang","year":"2010","unstructured":"Huang Y, Niu B, Gao Y, Fu L, Li W (2010) CD-HIT Suite: a web server for clustering and comparing biological sequences. Bioinformatics 26:680\u2013682. https:\/\/doi.org\/10.1093\/bioinformatics\/btq003","journal-title":"Bioinformatics"},{"key":"2511_CR25","doi-asserted-by":"publisher","first-page":"2153","DOI":"10.1007\/s11274-014-1655-7","volume":"30","author":"SA Jassim","year":"2014","unstructured":"Jassim SA, Limoges RG (2014) Natural solution to antibiotic resistance: bacteriophages \u201cThe Living Drugs.\u201d World J Microbiol Biotechnol 30:2153\u20132170. https:\/\/doi.org\/10.1007\/s11274-014-1655-7","journal-title":"World J Microbiol Biotechnol"},{"key":"2511_CR26","doi-asserted-by":"publisher","first-page":"772","DOI":"10.1093\/molbev\/mst010","volume":"30","author":"K Katoh","year":"2013","unstructured":"Katoh K, Standley DM (2013) MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Mol Biol Evol 30:772\u2013780. https:\/\/doi.org\/10.1093\/molbev\/mst010","journal-title":"Mol Biol Evol"},{"key":"2511_CR27","doi-asserted-by":"publisher","first-page":"118","DOI":"10.1038\/nature25474","volume":"554","author":"KM Kauffman","year":"2018","unstructured":"Kauffman KM, Hussain FA, Yang J et al (2018) A major lineage of non-tailed dsDNA viruses as unrecognized killers of marine bacteria. Nature 554:118\u2013122. https:\/\/doi.org\/10.1038\/nature25474","journal-title":"Nature"},{"key":"2511_CR28","first-page":"3","volume":"3","author":"AE Kazakov","year":"2003","unstructured":"Kazakov AE, Vassieva O, Gelfand MS, Osterman A, Overbeek R (2003) Bioinformatics classification and functional analysis of PhoH homologs. Silico Biol 3:3\u201315","journal-title":"Silico Biol"},{"key":"2511_CR29","doi-asserted-by":"publisher","first-page":"1827","DOI":"10.1038\/ismej.2013.58","volume":"7","author":"L Kelly","year":"2013","unstructured":"Kelly L, Ding H, Huang KH, Osburne MS, Chisholm SW (2013) Genetic diversity in cultured and wild marine cyanomyoviruses reveals phosphorus stress as a strong selective agent. ISME J 7:1827\u20131841. https:\/\/doi.org\/10.1038\/ismej.2013.58","journal-title":"ISME J"},{"key":"2511_CR30","doi-asserted-by":"publisher","first-page":"90","DOI":"10.1186\/s40168-020-00867-0","volume":"8","author":"K Kieft","year":"2020","unstructured":"Kieft K, Zhou Z, Anantharaman K (2020) VIBRANT: automated recovery, annotation and curation of microbial viruses, and evaluation of viral community function from genomic sequences. Microbiome 8:90. https:\/\/doi.org\/10.1186\/s40168-020-00867-0","journal-title":"Microbiome"},{"key":"2511_CR31","doi-asserted-by":"publisher","first-page":"1639","DOI":"10.1101\/gr.092759.109","volume":"19","author":"M Krzywinski","year":"2009","unstructured":"Krzywinski M, Schein J, Birol I et al (2009) Circos: an information aesthetic for comparative genomics. Genome Res 19:1639\u20131645. https:\/\/doi.org\/10.1101\/gr.092759.109","journal-title":"Genome Res"},{"key":"2511_CR32","doi-asserted-by":"publisher","first-page":"141","DOI":"10.1007\/978-1-60327-164-6_14","volume":"501","author":"E Kutter","year":"2009","unstructured":"Kutter E (2009) Phage host range and efficiency of plating. Methods Mol Biol 501:141\u2013149. https:\/\/doi.org\/10.1007\/978-1-60327-164-6_14","journal-title":"Methods Mol Biol"},{"key":"2511_CR33","doi-asserted-by":"publisher","first-page":"5174","DOI":"10.1073\/pnas.0501140102","volume":"102","author":"T Kwan","year":"2005","unstructured":"Kwan T, Liu J, DuBow M, Gros P, Pelletier J (2005) The complete genomes and proteomes of 27 Staphylococcus aureus bacteriophages. Proc Natl Acad Sci USA 102:5174\u20135179. https:\/\/doi.org\/10.1073\/pnas.0501140102","journal-title":"Proc Natl Acad Sci USA"},{"key":"2511_CR34","doi-asserted-by":"publisher","first-page":"1114","DOI":"10.3389\/fmicb.2016.01114","volume":"7","author":"V Letchumanan","year":"2016","unstructured":"Letchumanan V, Chan KG, Pusparajah P et al (2016) Insights into bacteriophage application in controlling Vibrio species. Front Microbiol 7:1114. https:\/\/doi.org\/10.3389\/fmicb.2016.01114","journal-title":"Front Microbiol"},{"key":"2511_CR35","doi-asserted-by":"publisher","first-page":"4905","DOI":"10.1021\/acs.est.5b06186","volume":"50","author":"K Levy","year":"2016","unstructured":"Levy K, Woster AP, Goldstein RS, Carlton EJ (2016) Untangling the impacts of climate change on waterborne diseases: a systematic review of relationships between diarrheal diseases and temperature, rainfall, flooding, and drought. Environ Sci Technol 50:4905\u20134922. https:\/\/doi.org\/10.1021\/acs.est.5b06186","journal-title":"Environ Sci Technol"},{"key":"2511_CR36","doi-asserted-by":"publisher","first-page":"911","DOI":"10.1038\/s41598-018-37508-4","volume":"9","author":"X Li","year":"2019","unstructured":"Li X, Sun Y, Liu J, Yao Q, Wang G (2019) Survey of the bacteriophage phoH gene in wetland sediments in northeast China. Sci Rep 9:911. https:\/\/doi.org\/10.1038\/s41598-018-37508-4","journal-title":"Sci Rep"},{"key":"2511_CR37","doi-asserted-by":"publisher","first-page":"83","DOI":"10.1038\/nature06130","volume":"449","author":"D Lindell","year":"2007","unstructured":"Lindell D, Jaffe JD, Coleman ML et al (2007) Genome-wide expression dynamics of a marine virus and host reveal features of co-evolution. Nature 449:83\u201386. https:\/\/doi.org\/10.1038\/nature06130","journal-title":"Nature"},{"key":"2511_CR38","doi-asserted-by":"publisher","first-page":"2590","DOI":"10.1111\/raq.12460","volume":"12","author":"K-Y Loo","year":"2020","unstructured":"Loo K-Y, Letchumanan V, Law JW-F et al (2020) Incidence of antibiotic resistance in Vibrio spp. Rev Aquacult 12:2590\u20132608. https:\/\/doi.org\/10.1111\/raq.12460","journal-title":"Rev Aquacult"},{"key":"2511_CR39","doi-asserted-by":"publisher","first-page":"955","DOI":"10.1093\/nar\/25.5.955","volume":"25","author":"TM Lowe","year":"1997","unstructured":"Lowe TM, Eddy SR (1997) tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res 25:955\u2013964. https:\/\/doi.org\/10.1093\/nar\/25.5.955","journal-title":"Nucleic Acids Res"},{"key":"2511_CR40","doi-asserted-by":"publisher","first-page":"375","DOI":"10.3389\/fmicb.2013.00375","volume":"4","author":"C Lutz","year":"2013","unstructured":"Lutz C, Erken M, Noorian P, Sun S, McDougald D (2013) Environmental reservoirs and mechanisms of persistence of Vibrio cholerae. Front Microbiol 4:375. https:\/\/doi.org\/10.3389\/fmicb.2013.00375","journal-title":"Front Microbiol"},{"key":"2511_CR41","doi-asserted-by":"publisher","first-page":"146","DOI":"10.1016\/j.aquaculture.2014.11.039","volume":"437","author":"B Madhusudana Rao","year":"2015","unstructured":"Madhusudana Rao B, Lalitha KV (2015) Bacteriophages for aquaculture: are they beneficial or inimical. Aquaculture 437:146\u2013154. https:\/\/doi.org\/10.1016\/j.aquaculture.2014.11.039","journal-title":"Aquaculture"},{"key":"2511_CR42","doi-asserted-by":"publisher","first-page":"64","DOI":"10.1007\/s00284-013-0447-x","volume":"68","author":"AN Maina","year":"2014","unstructured":"Maina AN, Mwaura FB, Oyugi J, Goulding D, Toribio AL, Kariuki S (2014) Characterization of Vibrio cholerae bacteriophages isolated from the environmental waters of the Lake Victoria region of Kenya. Curr Microbiol 68:64\u201370. https:\/\/doi.org\/10.1007\/s00284-013-0447-x","journal-title":"Curr Microbiol"},{"key":"2511_CR43","first-page":"121","volume":"11","author":"A Maina","year":"2021","unstructured":"Maina A, Mwaura F, Jumba M, Kieft K (2021) Isolation, characterisation of four Gram-negative environmental bacteria and bacteriophage plaques formation on their lawns. Int J Pharm Bio Sci 11:121\u2013129","journal-title":"Int J Pharm Bio Sci"},{"key":"2511_CR44","doi-asserted-by":"publisher","first-page":"100","DOI":"10.1016\/j.cis.2017.05.014","volume":"249","author":"DJ Malik","year":"2017","unstructured":"Malik DJ, Sokolov IJ, Vinner GK et al (2017) Formulation, stabilisation and encapsulation of bacteriophage for phage therapy. Adv Colloid Interface Sci 249:100\u2013133. https:\/\/doi.org\/10.1016\/j.cis.2017.05.014","journal-title":"Adv Colloid Interface Sci"},{"key":"2511_CR45","doi-asserted-by":"publisher","first-page":"12552","DOI":"10.1073\/pnas.0601301103","volume":"103","author":"AC Martiny","year":"2006","unstructured":"Martiny AC, Coleman ML, Chisholm SW (2006) Phosphate acquisition genes in Prochlorococcus ecotypes: evidence for genome-wide adaptation. Proc Natl Acad Sci USA 103:12552\u201312557. https:\/\/doi.org\/10.1073\/pnas.0601301103","journal-title":"Proc Natl Acad Sci USA"},{"key":"2511_CR46","doi-asserted-by":"publisher","first-page":"167","DOI":"10.1016\/j.aquaculture.2014.01.001","volume":"424","author":"L Mateus","year":"2014","unstructured":"Mateus L, Costa L, Silva Y, Pereira C, Cunha A, Almeida A (2014) Efficiency of phage cocktails in the inactivation of Vibrio in aquaculture. Aquaculture 424:167\u2013173. https:\/\/doi.org\/10.1016\/j.aquaculture.2014.01.001","journal-title":"Aquaculture"},{"key":"2511_CR47","doi-asserted-by":"publisher","first-page":"231","DOI":"10.1007\/978-1-4939-7343-9_17","volume":"1681","author":"K McNair","year":"2018","unstructured":"McNair K, Aziz RK, Pusch GD, Overbeek R, Dutilh BE, Edwards R (2018) Phage genome annotation using the RAST pipeline. Methods Mol Biol 1681:231\u2013238. https:\/\/doi.org\/10.1007\/978-1-4939-7343-9_17","journal-title":"Methods Mol Biol"},{"key":"2511_CR48","doi-asserted-by":"publisher","first-page":"5220","DOI":"10.1128\/jb.185.17.5220-5233.2003","volume":"185","author":"ES Miller","year":"2003","unstructured":"Miller ES, Heidelberg JF, Eisen JA et al (2003) Complete genome sequence of the broad-host-range vibriophage KVP40: comparative genomics of a T4-related bacteriophage. J Bacteriol 185:5220\u20135233. https:\/\/doi.org\/10.1128\/jb.185.17.5220-5233.2003","journal-title":"J Bacteriol"},{"key":"2511_CR49","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0180838","volume":"12","author":"IB Naser","year":"2017","unstructured":"Naser IB, Hoque MM, Abdullah A, Bari SMN, Ghosh AN, Faruque SM (2017) Environmental bacteriophages active on biofilms and planktonic forms of toxigenic Vibrio cholerae: potential relevance in cholera epidemiology. PLoS ONE 12:e0180838. https:\/\/doi.org\/10.1371\/journal.pone.0180838","journal-title":"PLoS ONE"},{"key":"2511_CR50","doi-asserted-by":"publisher","first-page":"693","DOI":"10.1038\/nrmicro2204","volume":"7","author":"EJ Nelson","year":"2009","unstructured":"Nelson EJ, Harris JB, Morris JG Jr, Calderwood SB, Camilli A (2009) Cholera transmission: the host, pathogen and bacteriophage dynamic. Nat Rev Microbiol 7:693\u2013702. https:\/\/doi.org\/10.1038\/nrmicro2204","journal-title":"Nat Rev Microbiol"},{"key":"2511_CR51","doi-asserted-by":"publisher","first-page":"2862","DOI":"10.1128\/jb.186.9.2862-2871.2004","volume":"186","author":"S O'Flaherty","year":"2004","unstructured":"O\u2019Flaherty S, Coffey A, Edwards R, Meaney W, Fitzgerald GF, Ross RP (2004) Genome of staphylococcal phage K: a new lineage of Myoviridae infecting Gram-positive bacteria with a low G+C content. J Bacteriol 186:2862\u20132871. https:\/\/doi.org\/10.1128\/jb.186.9.2862-2871.2004","journal-title":"J Bacteriol"},{"key":"2511_CR52","doi-asserted-by":"publisher","first-page":"3681","DOI":"10.1099\/jgv.0.000290","volume":"96","author":"T Ou","year":"2015","unstructured":"Ou T, Gao XC, Li SH, Zhang QY (2015) Genome analysis and gene nblA identification of Microcystis aeruginosa myovirus (MaMV-DC) reveal the evidence for horizontal gene transfer events between cyanomyovirus and host. J Gen Virol 96:3681\u20133697. https:\/\/doi.org\/10.1099\/jgv.0.000290","journal-title":"J Gen Virol"},{"key":"2511_CR53","unstructured":"Rambaut A (2007) FigTree, a graphical viewer of phylogenetic trees. Edinburgh, UK: Institute of Evolutionary Biology University of Edinburgh. http:\/\/tree.bio.ed.ac.uk\/software\/figtree\/"},{"key":"2511_CR54","volume-title":"Molecular cloning: a laboratory manual (3-volume set)","author":"J Sambrook","year":"2001","unstructured":"Sambrook J, Russell DW, Russell DW (2001) Molecular cloning: a laboratory manual (3-volume set), 3rd edn. Cold Spring Harbor Laboratory Press, New York","edition":"3"},{"key":"2511_CR55","doi-asserted-by":"publisher","first-page":"28","DOI":"10.1186\/1743-422x-2-28","volume":"2","author":"A Sen","year":"2005","unstructured":"Sen A, Ghosh AN (2005) New Vibrio cholerae O1 biotype ElTor bacteriophages. Virol J 2:28. https:\/\/doi.org\/10.1186\/1743-422x-2-28","journal-title":"Virol J"},{"key":"2511_CR56","doi-asserted-by":"publisher","first-page":"176","DOI":"10.12691\/jaem-2-4-11","volume":"2","author":"M Shah","year":"2014","unstructured":"Shah M (2014) An application of sequencing batch reactors in the identification of microbial community structure from an activated sludge. J Appl Env Microbiol 2:176\u2013184. https:\/\/doi.org\/10.12691\/jaem-2-4-11","journal-title":"J Appl Env Microbiol"},{"key":"2511_CR57","doi-asserted-by":"publisher","first-page":"1627","DOI":"10.1073\/pnas.1810138116","volume":"116","author":"CA Silva-Valenzuela","year":"2019","unstructured":"Silva-Valenzuela CA, Camilli A (2019) Niche adaptation limits bacteriophage predation of Vibrio cholerae in a nutrient-poor aquatic environment. Proc Natl Acad Sci USA 116:1627\u20131632. https:\/\/doi.org\/10.1073\/pnas.1810138116","journal-title":"Proc Natl Acad Sci USA"},{"key":"2511_CR58","doi-asserted-by":"publisher","first-page":"1312","DOI":"10.1093\/bioinformatics\/btu033","volume":"30","author":"A Stamatakis","year":"2014","unstructured":"Stamatakis A (2014) RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies. Bioinformatics 30:1312\u20131313. https:\/\/doi.org\/10.1093\/bioinformatics\/btu033","journal-title":"Bioinformatics"},{"key":"2511_CR59","doi-asserted-by":"publisher","first-page":"4070","DOI":"10.1128\/aem.00428-08","volume":"74","author":"AR Stenholm","year":"2008","unstructured":"Stenholm AR, Dalsgaard I, Middelboe M (2008) Isolation and characterization of bacteriophages infecting the fish pathogen Flavobacterium psychrophilum. Appl Environ Microbiol 74:4070\u20134078. https:\/\/doi.org\/10.1128\/aem.00428-08","journal-title":"Appl Environ Microbiol"},{"key":"2511_CR60","doi-asserted-by":"publisher","first-page":"649","DOI":"10.1128\/aac.45.3.649-659.2001","volume":"45","author":"A Sulakvelidze","year":"2001","unstructured":"Sulakvelidze A, Alavidze Z, Morris JG Jr (2001) Bacteriophage therapy. Antimicrob Agents Chemother 45:649\u2013659. https:\/\/doi.org\/10.1128\/aac.45.3.649-659.2001","journal-title":"Antimicrob Agents Chemother"},{"key":"2511_CR61","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pbio.0030144","volume":"3","author":"MB Sullivan","year":"2005","unstructured":"Sullivan MB, Coleman ML, Weigele P, Rohwer F, Chisholm SW (2005) Three Prochlorococcus cyanophage genomes: signature features and ecological interpretations. PLoS Biol 3:e144. https:\/\/doi.org\/10.1371\/journal.pbio.0030144","journal-title":"PLoS Biol"},{"key":"2511_CR62","doi-asserted-by":"publisher","first-page":"3035","DOI":"10.1111\/j.1462-2920.2010.02280.x","volume":"12","author":"MB Sullivan","year":"2010","unstructured":"Sullivan MB, Huang KH, Ignacio-Espinoza JC et al (2010) Genomic analysis of oceanic cyanobacterial myoviruses compared with T4-like myoviruses from diverse hosts and environments. Environ Microbiol 12:3035\u20133056. https:\/\/doi.org\/10.1111\/j.1462-2920.2010.02280.x","journal-title":"Environ Microbiol"},{"key":"2511_CR63","doi-asserted-by":"publisher","first-page":"1009","DOI":"10.1093\/bioinformatics\/btr039","volume":"27","author":"MJ Sullivan","year":"2011","unstructured":"Sullivan MJ, Petty NK, Beatson SA (2011) Easyfig: a genome comparison visualizer. Bioinformatics 27:1009\u20131010. https:\/\/doi.org\/10.1093\/bioinformatics\/btr039","journal-title":"Bioinformatics"},{"key":"2511_CR64","doi-asserted-by":"publisher","first-page":"350","DOI":"10.1046\/j.1462-2920.2003.00411.x","volume":"5","author":"M Talledo","year":"2003","unstructured":"Talledo M, Rivera IN, Lipp EK et al (2003) Characterization of a Vibrio cholerae phage isolated from the coastal water of Peru. Environ Microbiol 5:350\u2013354. https:\/\/doi.org\/10.1046\/j.1462-2920.2003.00411.x","journal-title":"Environ Microbiol"},{"key":"2511_CR65","doi-asserted-by":"publisher","first-page":"835","DOI":"10.1038\/ismej.2009.31","volume":"3","author":"SG Tetu","year":"2009","unstructured":"Tetu SG, Brahamsha B, Johnson DA et al (2009) Microarray analysis of phosphate regulation in the marine cyanobacterium Synechococcus sp. WH8102. ISME J 3:835\u2013849. https:\/\/doi.org\/10.1038\/ismej.2009.31","journal-title":"ISME J"},{"key":"2511_CR66","doi-asserted-by":"publisher","DOI":"10.3390\/v13030506","author":"D Turner","year":"2021","unstructured":"Turner D, Kropinski AM, Adriaenssens EM (2021) A roadmap for genome-based phage taxonomy. Viruses. https:\/\/doi.org\/10.3390\/v13030506","journal-title":"Viruses"},{"key":"2511_CR67","doi-asserted-by":"publisher","first-page":"15","DOI":"10.1007\/978-1-60327-164-6_2","volume":"501","author":"R van Twest","year":"2009","unstructured":"van Twest R, Kropinski AM (2009) Bacteriophage enrichment from water and soil. Methods Mol Biol 501:15\u201321. https:\/\/doi.org\/10.1007\/978-1-60327-164-6_2","journal-title":"Methods Mol Biol"},{"key":"2511_CR68","doi-asserted-by":"publisher","first-page":"45","DOI":"10.1016\/j.virol.2004.10.049","volume":"332","author":"J Wang","year":"2005","unstructured":"Wang J, Jiang Y, Vincent M et al (2005) Complete genome sequence of bacteriophage T5. Virology 332:45\u201365. https:\/\/doi.org\/10.1016\/j.virol.2004.10.049","journal-title":"Virology"},{"key":"2511_CR69","doi-asserted-by":"publisher","first-page":"38428","DOI":"10.1038\/srep38428","volume":"6","author":"X Wang","year":"2016","unstructured":"Wang X, Liu J, Yu Z, Jin J, Liu X, Wang G (2016) Novel groups and unique distribution of phage phoH genes in paddy waters in northeast China. Sci Rep 6:38428. https:\/\/doi.org\/10.1038\/srep38428","journal-title":"Sci Rep"},{"key":"2511_CR70","doi-asserted-by":"publisher","first-page":"1675","DOI":"10.1111\/j.1462-2920.2007.01285.x","volume":"9","author":"PR Weigele","year":"2007","unstructured":"Weigele PR, Pope WH, Pedulla ML et al (2007) Genomic and structural analysis of Syn9, a cyanophage infecting marine Prochlorococcus and Synechococcus. Environ Microbiol 9:1675\u20131695. https:\/\/doi.org\/10.1111\/j.1462-2920.2007.01285.x","journal-title":"Environ Microbiol"},{"key":"2511_CR71","doi-asserted-by":"publisher","first-page":"1762","DOI":"10.1128\/jb.01534-07","volume":"190","author":"T Yoshida","year":"2008","unstructured":"Yoshida T, Nagasaki K, Takashima Y et al (2008) Ma-LMM01 infecting toxic Microcystis aeruginosa illuminates diverse cyanophage genome strategies. J Bacteriol 190:1762\u20131772. https:\/\/doi.org\/10.1128\/jb.01534-07","journal-title":"J Bacteriol"},{"key":"2511_CR72","doi-asserted-by":"publisher","first-page":"124","DOI":"10.1016\/j.cub.2011.11.055","volume":"22","author":"Q Zeng","year":"2012","unstructured":"Zeng Q, Chisholm SW (2012) Marine viruses exploit their host\u2019s two-component regulatory system in response to resource limitation. Curr Biol 22:124\u2013128. https:\/\/doi.org\/10.1016\/j.cub.2011.11.055","journal-title":"Curr Biol"}],"container-title":["Archives of Microbiology"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/link.springer.com\/content\/pdf\/10.1007\/s00203-021-02511-3.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/link.springer.com\/article\/10.1007\/s00203-021-02511-3\/fulltext.html","content-type":"text\/html","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/link.springer.com\/content\/pdf\/10.1007\/s00203-021-02511-3.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2022,12,28]],"date-time":"2022-12-28T11:03:47Z","timestamp":1672225427000},"score":1,"resource":{"primary":{"URL":"https:\/\/link.springer.com\/10.1007\/s00203-021-02511-3"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2021,8,11]]},"references-count":72,"journal-issue":{"issue":"9","published-print":{"date-parts":[[2021,11]]}},"alternative-id":["2511"],"URL":"https:\/\/doi.org\/10.1007\/s00203-021-02511-3","relation":{"has-preprint":[{"id-type":"doi","id":"10.21203\/rs.3.rs-185269\/v1","asserted-by":"object"}]},"ISSN":["0302-8933","1432-072X"],"issn-type":[{"value":"0302-8933","type":"print"},{"value":"1432-072X","type":"electronic"}],"subject":[],"published":{"date-parts":[[2021,8,11]]},"assertion":[{"value":"8 December 2020","order":1,"name":"received","label":"Received","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"23 July 2021","order":2,"name":"revised","label":"Revised","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"4 August 2021","order":3,"name":"accepted","label":"Accepted","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"11 August 2021","order":4,"name":"first_online","label":"First Online","group":{"name":"ArticleHistory","label":"Article History"}},{"order":1,"name":"Ethics","group":{"name":"EthicsHeading","label":"Declarations"}},{"value":"None of the authors has a financial or personal conflict of interest to declare.","order":2,"name":"Ethics","group":{"name":"EthicsHeading","label":"Conflict of interest"}}]}}