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We analyzed the genomes and metabolomes of six strains,\n                    <jats:italic>Chromobacterium violaceum<\/jats:italic>\n                    CNPSo 1954,\n                    <jats:italic>Pantoea agglomerans<\/jats:italic>\n                    CNPSo 2602,\n                    <jats:italic>Bacillus velezensis<\/jats:italic>\n                    CNPSo 2657,\n                    <jats:italic>Bacillus altitudinis<\/jats:italic>\n                    CNPSo 2658,\n                    <jats:italic>Bacillus safensis<\/jats:italic>\n                    CNPSo 2725, and the novel species\n                    <jats:italic>Pseudomonas<\/jats:italic>\n                    sp. CNPSo 2799. Genomic bioprospection revealed diverse biosynthetic gene clusters (BGCs) involved in secondary metabolites production, accounting for 4.26% of the total genome in strain CNPSo 2602 and 18.03% in strain CNPSo 2657. An average of 79 carbohydrate-active enzymes (CAZymes) were identified per genome, with glycoside hydrolases and glycosyltransferases accounting for more than 50% of all identified enzymes. The strains exhibited distinct antibiotic resistance profiles, ranging from three (CNPSo 2658 and CNPSo 2725) to 12 (CNPSo 2602). All strains carried the genes for tryptophan-biosynthesis, and targeted metabolomic analysis confirmed the production of the phytohormones indole-3-acetic (IAA), indole-3-butyric (IBA), indole-3-pyruvic acids (IPA), and L-tryptophan (TRP), with strain-specific variation in metabolic profiles. These strains exhibited multiple growth-promoting and biocontrol traits, highlighting a potential as multifunctional next-generation bio-inputs for sustainable agricultural applications.\n                  <\/jats:p>\n                  <jats:p>\n                    <jats:bold>Graphical abstract<\/jats:bold>\n                  <\/jats:p>","DOI":"10.1007\/s00203-025-04712-6","type":"journal-article","created":{"date-parts":[[2026,1,21]],"date-time":"2026-01-21T06:37:27Z","timestamp":1768977447000},"update-policy":"https:\/\/doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":3,"title":["Integrated genome mining and phytohormone profiling of six plant growth-promoting elite bacterial strains"],"prefix":"10.1007","volume":"208","author":[{"ORCID":"https:\/\/orcid.org\/0000-0003-3125-1796","authenticated-orcid":false,"given":"Tairine Graziella","family":"Ercole","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-2973-4211","authenticated-orcid":false,"given":"Rafaella","family":"Liviero","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-4100-8079","authenticated-orcid":false,"given":"Leonardo Araujo","family":"Terra","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-8835-0184","authenticated-orcid":false,"given":"Guilherme Juli\u00e3o","family":"Zocolo","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-4456-4345","authenticated-orcid":false,"given":"Milena Serenato","family":"Klepa","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-7278-3687","authenticated-orcid":false,"given":"Renan Augusto","family":"Ribeiro","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-7747-9839","authenticated-orcid":false,"given":"Marco Antonio","family":"Nogueira","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-5132-8685","authenticated-orcid":false,"given":"Mariangela","family":"Hungria","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"297","published-online":{"date-parts":[[2026,1,21]]},"reference":[{"key":"4712_CR1","doi-asserted-by":"publisher","DOI":"10.1128\/genomeA.00356-16","volume":"4","author":"S Aarab","year":"2016","unstructured":"Aarab S, Arakrak A, Ollero FJ, Meg\u00edas M, Gomes DF, Ribeiro RA, Hungria M (2016a) Pseudomonas fluorescens strains ET76, isolated from rice rhizosphere in northwestern Morocco. 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