{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,9,15]],"date-time":"2026-09-15T12:03:04Z","timestamp":1789473784128,"version":"build-2803163510"},"reference-count":80,"publisher":"Springer Science and Business Media LLC","issue":"12","license":[{"start":{"date-parts":[[2026,9,15]],"date-time":"2026-09-15T00:00:00Z","timestamp":1789430400000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.springernature.com\/gp\/researchers\/text-and-data-mining"},{"start":{"date-parts":[[2026,9,15]],"date-time":"2026-09-15T00:00:00Z","timestamp":1789430400000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/www.springernature.com\/gp\/researchers\/text-and-data-mining"}],"funder":[{"DOI":"10.13039\/501100001412","name":"Council of Scientific and Industrial Research, India","doi-asserted-by":"publisher","award":["MLP-202"],"award-info":[{"award-number":["MLP-202"]}],"id":[{"id":"10.13039\/501100001412","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100001843","name":"Science and Engineering Research Board","doi-asserted-by":"publisher","award":["SRG\/2020\/001139 (GAP 273) and EEQ\/2022\/000015 (GAP 318)"],"award-info":[{"award-number":["SRG\/2020\/001139 (GAP 273) and EEQ\/2022\/000015 (GAP 318)"]}],"id":[{"id":"10.13039\/501100001843","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":["link.springer.com"],"crossmark-restriction":false},"short-container-title":["Arch Microbiol"],"published-print":{"date-parts":[[2026,12]]},"DOI":"10.1007\/s00203-026-05190-0","type":"journal-article","created":{"date-parts":[[2026,9,15]],"date-time":"2026-09-15T09:48:39Z","timestamp":1789465719000},"update-policy":"https:\/\/doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":0,"title":["Characterization of culturable endophytes and microbial communities in the rhizosphere and pitcher fluid of the carnivorous plant Nepenthes khasiana"],"prefix":"10.1007","volume":"208","author":[{"ORCID":"https:\/\/orcid.org\/0000-0003-4105-4075","authenticated-orcid":false,"given":"Kiran","family":"Dhiman","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-6299-5478","authenticated-orcid":false,"given":"Manisha","family":"Devi","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-0106-2735","authenticated-orcid":false,"given":"Arun","family":"Kumar","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-9730-2547","authenticated-orcid":false,"given":"Shiv Shanker","family":"Pandey","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-1266-7606","authenticated-orcid":false,"given":"Jeremy","family":"Dkhar","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"297","published-online":{"date-parts":[[2026,9,15]]},"reference":[{"key":"5190_CR1","doi-asserted-by":"publisher","first-page":"127","DOI":"10.1007\/s11104-004-2754-2","volume":"274","author":"W Adlassnig","year":"2005","unstructured":"Adlassnig W, Peroutka M, Lambers H et al (2005) The roots of carnivorous plants. Plant Soil 274:127\u2013140","journal-title":"Plant Soil"},{"key":"5190_CR2","doi-asserted-by":"publisher","first-page":"36","DOI":"10.1016\/j.micres.2019.02.001","volume":"221","author":"I Afzal","year":"2019","unstructured":"Afzal I (2019) Plant beneficial endophytic bacteria: Mechanisms, diversity, host range and genetic determinants. Microbiol Res 221:36\u201349","journal-title":"Microbiol Res"},{"key":"5190_CR3","doi-asserted-by":"publisher","first-page":"14","DOI":"10.1016\/j.apsoil.2015.03.001","volume":"92","author":"M Aira","year":"2015","unstructured":"Aira M, Bybee S, Dom\u00ednguez J (2015) Carnivory does not change the rhizosphere bacterial community of the plant Drosera intermedia. Appl Soil Ecol 92:14\u201317","journal-title":"Appl Soil Ecol"},{"key":"5190_CR4","doi-asserted-by":"publisher","first-page":"1455","DOI":"10.1007\/s00248-023-02190-1","volume":"86","author":"U Anand","year":"2023","unstructured":"Anand U, Pal T, Yadav N et al (2023) Current scenario and future prospects of endophytic microbes: promising candidates for abiotic and biotic stress management for agricultural and environmental sustainability. Microb Ecol 86:1455\u20131486","journal-title":"Microb Ecol"},{"key":"5190_CR5","doi-asserted-by":"publisher","first-page":"e56329","DOI":"10.1371\/journal.pone.0056329","volume":"8","author":"N Bodenhausen","year":"2013","unstructured":"Bodenhausen N, Horton MW, Bergelson J (2013) Bacterial communities associated with the leaves and the roots of Arabidopsis thaliana. PLoS ONE 8:e56329","journal-title":"PLoS ONE"},{"key":"5190_CR6","doi-asserted-by":"publisher","first-page":"37","DOI":"10.1007\/s11104-008-9877-9","volume":"320","author":"MC Brundrett","year":"2009","unstructured":"Brundrett MC (2009) Mycorrhizal associations and other means of nutrition of vascular plants: understanding the global diversity of host plants by resolving conflicting information and developing reliable means of diagnosis. Plant Soil 320:37\u201377","journal-title":"Plant Soil"},{"key":"5190_CR7","doi-asserted-by":"publisher","first-page":"20016","DOI":"10.1038\/srep20016","volume":"6","author":"XY Chan","year":"2016","unstructured":"Chan XY, Hong KW, Yin WF et al (2016) Microbiome and biocatalytic bacteria in monkey cup (Nepenthes pitcher) digestive fluid. Sci Rep 6:20016","journal-title":"Sci Rep"},{"key":"5190_CR8","doi-asserted-by":"publisher","first-page":"709","DOI":"10.1007\/s00203-014-1011-1","volume":"196","author":"LY Chou","year":"2014","unstructured":"Chou LY, Clarke CM, Dykes GA (2014) Bacterial communities associated with the pitcher fluids of three Nepenthes (Nepenthaceae) pitcher plant species growing in the wild. Arch Microbiol 196:709\u2013717","journal-title":"Arch Microbiol"},{"key":"5190_CR9","doi-asserted-by":"publisher","first-page":"461","DOI":"10.1099\/ijsem.0.002516","volume":"68","author":"J Chun","year":"2018","unstructured":"Chun J, Oren A, Ventosa A et al (2018) Proposed minimal standards for the use of genome data for the taxonomy of prokaryotes. Int J Syst Evol Microbiol 68:461\u2013466","journal-title":"Int J Syst Evol Microbiol"},{"key":"5190_CR10","doi-asserted-by":"publisher","first-page":"42","DOI":"10.3390\/jof4020042","volume":"4","author":"EC Chutulo","year":"2018","unstructured":"Chutulo EC, Chalannavar RK (2018) Endophytic mycoflora and their bioactive compounds from Azadirachta indica: A comprehensive review. J Fungi 4:42","journal-title":"J Fungi"},{"key":"5190_CR11","doi-asserted-by":"publisher","first-page":"84","DOI":"10.1111\/j.1574-6941.2007.00410.x","volume":"63","author":"S Compant","year":"2008","unstructured":"Compant S, Kaplan H, Sessitsch A et al (2008) Endophytic colonization of Vitis vinifera L. by Burkholderia phytofirmans strain PsJN: from the rhizosphere to inflorescence tissues. FEMS Microbiol Ecol 63:84\u201393","journal-title":"FEMS Microbiol Ecol"},{"key":"5190_CR12","doi-asserted-by":"publisher","first-page":"772","DOI":"10.1038\/nmeth.2109","volume":"9","author":"D Darriba","year":"2012","unstructured":"Darriba D, Taboada GL, Doallo R et al (2012) jModelTest 2: more models, new heuristics and parallel computing. Nat Methods 9:772","journal-title":"Nat Methods"},{"key":"5190_CR13","doi-asserted-by":"publisher","first-page":"559","DOI":"10.1080\/23818107.2025.2545823","volume":"172","author":"K Dhiman","year":"2025","unstructured":"Dhiman K, Devi M, Dkhar J (2025) The acid phosphatase-containing digestive fluid secreted by Nepenthes khasiana pitchers inhibits plant growth, possibly due to the presence of heat-stable growth-inhibitory molecules. Bot Lett 172:559\u2013571","journal-title":"Bot Lett"},{"key":"5190_CR15","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1186\/s12870-020-02663-2","volume":"20","author":"J Dkhar","year":"2020","unstructured":"Dkhar J, Bhaskar YK, Lynn A et al (2020) Pitchers of Nepenthes khasiana express several digestive-enzyme encoding genes, harbor mostly fungi and probably evolved through changes in the expression of leaf polarity genes. BMC Plant Biol 20:1\u201321","journal-title":"BMC Plant Biol"},{"key":"5190_CR14","doi-asserted-by":"publisher","first-page":"e14361","DOI":"10.1111\/ppl.14361","volume":"176","author":"J Dkhar","year":"2024","unstructured":"Dkhar J, Bagri J, Dhiman K et al (2024) Transcriptomic and metabolomic responses to varying nutrient conditions reveal new insights into pitcher formation in Nepenthes khasiana. Physiol Plant 176:e14361","journal-title":"Physiol Plant"},{"key":"5190_CR16","doi-asserted-by":"publisher","first-page":"2233","DOI":"10.1007\/s42770-021-00630-z","volume":"52","author":"J Duran-Bedolla","year":"2021","unstructured":"Duran-Bedolla J, Garza-Ramos U, Rodr\u00edguez-Medina N et al (2021) Exploring the environmental traits and applications of Klebsiella variicola. Braz J Microbiol 52:2233\u20132245","journal-title":"Braz J Microbiol"},{"key":"5190_CR17","doi-asserted-by":"publisher","first-page":"911","DOI":"10.1093\/jxb\/erp359","volume":"61","author":"H Eilenberg","year":"2010","unstructured":"Eilenberg H, Pnini-Cohen S, Rahamim Y et al (2010) Induced production of antifungal naphthoquinones in the pitchers of the carnivorous plant Nepenthes khasiana. J Exp Bot 61:911\u2013922","journal-title":"J Exp Bot"},{"key":"5190_CR18","doi-asserted-by":"publisher","first-page":"7078","DOI":"10.1038\/s41598-021-86399-5","volume":"11","author":"T Faddetta","year":"2021","unstructured":"Faddetta T, Abbate L, Alibrandi P et al (2021) The endophytic microbiota of Citrus limon is transmitted from seed to shoot highlighting differences of bacterial and fungal community structures. Sci Rep 11:7078","journal-title":"Sci Rep"},{"key":"5190_CR19","doi-asserted-by":"publisher","first-page":"467","DOI":"10.3389\/fbioe.2020.00467","volume":"8","author":"AE Fadiji","year":"2020","unstructured":"Fadiji AE, Babalola OO (2020) Elucidating mechanisms of endophytes used in plant protection and other bioactivities with multifunctional prospects. Front Bioeng Biotechnol 8:467","journal-title":"Front Bioeng Biotechnol"},{"key":"5190_CR20","doi-asserted-by":"publisher","first-page":"70","DOI":"10.3390\/microorganisms5040070","volume":"5","author":"AC Frank","year":"2017","unstructured":"Frank AC, Saldierna Guzm\u00e1n JP, Shay JE (2017) Transmission of bacterial endophytes. Microorganisms 5:70","journal-title":"Microorganisms"},{"key":"5190_CR21","doi-asserted-by":"publisher","first-page":"4431","DOI":"10.1038\/s41598-020-61193-x","volume":"10","author":"KJ Gilbert","year":"2020","unstructured":"Gilbert KJ, Bittleston LS, Tong W et al (2020) Tropical pitcher plants (Nepenthes) act as ecological filters by altering properties of their fluid microenvironments. Sci Rep 10:4431","journal-title":"Sci Rep"},{"key":"5190_CR22","doi-asserted-by":"publisher","first-page":"e32980","DOI":"10.1371\/journal.pone.0032980","volume":"7","author":"A Glenn","year":"2012","unstructured":"Glenn A, Bodri MS (2012) Fungal endophyte diversity in Sarracenia. PLoS ONE 7:e32980","journal-title":"PLoS ONE"},{"key":"5190_CR24","doi-asserted-by":"publisher","first-page":"e6392","DOI":"10.7717\/peerj.6392","volume":"7","author":"JJ Grothjan","year":"2019","unstructured":"Grothjan JJ, Young EB (2019) Diverse microbial communities hosted by the model carnivorous pitcher plant Sarracenia purpurea: analysis of both bacterial and eukaryotic composition across distinct host plant populations. PeerJ 7:e6392","journal-title":"PeerJ"},{"key":"5190_CR25","doi-asserted-by":"publisher","first-page":"791079","DOI":"10.3389\/fmicb.2022.791079","volume":"13","author":"JJ Grothjan","year":"2022","unstructured":"Grothjan JJ, Young EB (2022) Bacterial recruitment to carnivorous pitcher plant communities: identifying sources influencing plant microbiome composition and function. Front Microbiol 13:791079","journal-title":"Front Microbiol"},{"key":"5190_CR27","doi-asserted-by":"publisher","first-page":"463","DOI":"10.1016\/j.tim.2008.07.008","volume":"16","author":"PR Hardoim","year":"2008","unstructured":"Hardoim PR, van Overbeek LS, Elsas JD (2008) Properties of bacterial endophytes and their proposed role in plant growth. Trends Microbiol 16:463\u2013471","journal-title":"Trends Microbiol"},{"key":"5190_CR26","doi-asserted-by":"publisher","first-page":"154","DOI":"10.1111\/j.1574-6941.2011.01092.x","volume":"77","author":"PR Hardoim","year":"2011","unstructured":"Hardoim PR, Andreote FD, Reinhold-Hurek B et al (2011) Rice root-associated bacteria: insights into community structures across 10 cultivars. FEMS Microbiol Ecol 77:154\u2013164","journal-title":"FEMS Microbiol Ecol"},{"key":"5190_CR28","doi-asserted-by":"publisher","first-page":"96","DOI":"10.1016\/j.mimet.2012.04.014","volume":"90","author":"NH Hazrin-Chong","year":"2012","unstructured":"Hazrin-Chong NH, Manefield M (2012) An alternative SEM drying method using hexamethyldisilazane (HMDS) for microbial cell attachment studies on sub-bituminous coal. J Microbiol Methods 90:96\u201399","journal-title":"J Microbiol Methods"},{"issue":"2111","key":"5190_CR29","first-page":"2119","volume":"22","author":"PW Hill","year":"2019","unstructured":"Hill PW, Broughton R, Bougoure J et al (2019) Angiosperm symbioses with non-mycorrhizal fungal partners enhance N acquisition from ancient organic matter in a warming maritime Antarctic. Ecol Lett 2019 22: 2111\u20132119","journal-title":"Ecol Lett 2019"},{"key":"5190_CR30","doi-asserted-by":"publisher","first-page":"464","DOI":"10.1016\/j.cell.2016.02.028","volume":"165","author":"K Hiruma","year":"2016","unstructured":"Hiruma K, Gerlach N, Sacrist\u00e1n S et al (2016) Root endophyte Colletotrichum tofieldiae confers plant fitness benefits that are phosphate status dependent. Cell 165:464\u2013474","journal-title":"Cell"},{"key":"5190_CR31","doi-asserted-by":"publisher","first-page":"16048","DOI":"10.1038\/nmicrobiol.2016.48","volume":"1","author":"LA Hug","year":"2016","unstructured":"Hug LA, Baker BJ, Anantharaman K et al (2016) A new view of the tree of life. Nat Microbiol 1:16048","journal-title":"Nat Microbiol"},{"key":"5190_CR32","doi-asserted-by":"publisher","first-page":"e70231","DOI":"10.1111\/mpp.70231","volume":"27","author":"S Jordan","year":"2026","unstructured":"Jordan S, de Maayer P, Smits THM et al (2026) Enterobacter species: opportunistic human and plant pathogens with plant-beneficial traits. Mol Plant Pathol 27:e70231","journal-title":"Mol Plant Pathol"},{"key":"5190_CR33","doi-asserted-by":"publisher","first-page":"313","DOI":"10.1007\/s10811-009-9461-6","volume":"22","author":"SW Jung","year":"2010","unstructured":"Jung SW, Joo HM, Park JS et al (2010) Development of a rapid and effective method for preparing delicate dinoflagellates for scanning electron microscopy. J Appl Phycol 22:313\u2013317","journal-title":"J Appl Phycol"},{"key":"5190_CR34","doi-asserted-by":"publisher","first-page":"77","DOI":"10.3390\/microorganisms5040077","volume":"5","author":"SL Kandel","year":"2017","unstructured":"Kandel SL, Joubert PM, Doty SL (2017) Bacterial endophyte colonization and distribution within plants. Microorganisms 5:77","journal-title":"Microorganisms"},{"key":"5190_CR35","first-page":"199","volume-title":"Microbial endophytes","author":"DY Kobayashi","year":"2000","unstructured":"Kobayashi DY, Palumbo JD (2000) Bacterial endophytes and their effects on plants and uses in agriculture. In: Bacon CW, White JF (eds) Microbial endophytes. Marcel Dekker Inc., New York, pp 199\u2013233"},{"key":"5190_CR36","doi-asserted-by":"publisher","first-page":"126436","DOI":"10.1016\/j.jnc.2023.126436","volume":"74","author":"P Konwar","year":"2023","unstructured":"Konwar P, Das B, Saikia J et al (2023) Identifying conservation priority areas and predicting the climate change impact on the future habitats of endangered Nepenthes khasiana Hook.f. utilizing ecological niche modelling. J Nat Conserv 74:126436","journal-title":"J Nat Conserv"},{"key":"5190_CR38","doi-asserted-by":"publisher","first-page":"364","DOI":"10.5943\/mycosphere\/5\/2\/10","volume":"5","author":"JM Lee","year":"2014","unstructured":"Lee JM, Tan WS, Ting ASY (2014) Revealing the antimicrobial and enzymatic potentials of culturable fungal endophytes from tropical pitcher plants (Nepenthes spp). Mycosphere 5:364\u2013377","journal-title":"Mycosphere"},{"key":"5190_CR37","doi-asserted-by":"publisher","first-page":"1405","DOI":"10.3390\/ijpb15040097","volume":"15","author":"B-Y Lee","year":"2024","unstructured":"Lee B-Y, Andresen N, Sheridan P et al (2024) Characterization of the rhizobiome of the yellow pitcher plant (Sarracenia flava) in wild and restored habitats of Virginia. Int J Plant Biol 15:1405\u20131417","journal-title":"Int J Plant Biol"},{"key":"5190_CR39","doi-asserted-by":"publisher","first-page":"301","DOI":"10.1007\/s13225-025-00550-5","volume":"131","author":"C Liao","year":"2025","unstructured":"Liao C, Doilom M, Jeewon R et al (2025) Challenges and update on fungal endophytes: classification, definition, diversity, ecology, evolution and functions. Fungal Divers 131:301\u2013367","journal-title":"Fungal Divers"},{"key":"5190_CR40","doi-asserted-by":"publisher","first-page":"153908","DOI":"10.1016\/j.scitotenv.2022.153908","volume":"826","author":"S Liu","year":"2022","unstructured":"Liu S, He F, Kuzyakov Y et al (2022) Nutrients in the rhizosphere: A meta-analysis of content, availability, and influencing factors. Sci Total Environ 826:153908","journal-title":"Sci Total Environ"},{"key":"5190_CR41","doi-asserted-by":"publisher","first-page":"fuad066","DOI":"10.1093\/femsre\/fuad066","volume":"48","author":"Y Liu","year":"2024","unstructured":"Liu Y, Xu Z, Chen L et al (2024) Root colonization by beneficial rhizobacteria. FEMS Microbiol Rev 48:fuad066","journal-title":"FEMS Microbiol Rev"},{"key":"5190_CR42","doi-asserted-by":"publisher","first-page":"834","DOI":"10.3389\/fmicb.2017.00834","volume":"8","author":"S L\u00f2pez-Fern\u00e0ndez","year":"2017","unstructured":"L\u00f2pez-Fern\u00e0ndez S, Mazzoni V, Pedrazzoli F et al (2017) Phloem-feeding insect transfers bacterial endophytic communities between grapevine plants. Front Microbiol 8:834","journal-title":"Front Microbiol"},{"key":"5190_CR43","doi-asserted-by":"publisher","first-page":"391","DOI":"10.1002\/9781118297674.ch36","volume-title":"Molecular microbial ecology of the rhizosphere","author":"N Malfanova","year":"2013","unstructured":"Malfanova N, Lugtenberg BJ, Berg G (2013) Bacterial endophytes: who and where, and what are they doing there? In: BrujinDe FJ (ed) Molecular microbial ecology of the rhizosphere. John Wiley & Sons Inc., Hoboken, New Jersey, pp 391\u2013403"},{"key":"5190_CR44","doi-asserted-by":"publisher","first-page":"e00095","DOI":"10.1128\/mSphere.00095-17","volume":"2","author":"CGP McCarthy","year":"2017","unstructured":"McCarthy CGP, Fitzpatrick DA (2017) Phylogenomic reconstruction of the oomycete phylogeny derived from 37 genomes. mSphere 2:e00095\u2013e00017","journal-title":"mSphere"},{"key":"5190_CR45","doi-asserted-by":"publisher","first-page":"65","DOI":"10.2165\/00822942-200504010-00008","volume":"4","author":"K M\u00fcller","year":"2005","unstructured":"M\u00fcller K (2005) SeqState: primer design and sequence statistics for phylogenetic DNA datasets. Appl Bioinf 4:65\u201369","journal-title":"Appl Bioinf"},{"key":"5190_CR46","doi-asserted-by":"publisher","first-page":"3648","DOI":"10.1038\/s41598-020-60350-6","volume":"10","author":"S Munir","year":"2020","unstructured":"Munir S, Li Y, He P et al (2020) Core endophyte communities of different citrus varieties from citrus growing regions in China. Sci Rep 10:3648","journal-title":"Sci Rep"},{"key":"5190_CR47","doi-asserted-by":"publisher","first-page":"301","DOI":"10.1007\/s11104-013-1792-z","volume":"373","author":"P Nakayan","year":"2013","unstructured":"Nakayan P, Hameed A, Singh S et al (2013) Phosphate-solubilizing soil yeast Meyerozyma guilliermondii CC1 improves maize (Zea mays L.) productivity and minimizes requisite chemical fertilization. Plant Soil 373:301\u2013315","journal-title":"Plant Soil"},{"key":"5190_CR48","doi-asserted-by":"publisher","first-page":"138","DOI":"10.5943\/sif\/6\/1\/7","volume":"6","author":"F Naseem","year":"2021","unstructured":"Naseem F, Kayang H (2021) Endophytic fungal diversity of endemic carnivorous plant Nepenthes khasiana in Meghalaya, India. Stud Fungi 6:138\u2013150","journal-title":"Stud Fungi"},{"key":"5190_CR49","doi-asserted-by":"publisher","first-page":"7319","DOI":"10.1128\/AEM.69.12.7319-7327.2003","volume":"69","author":"KL Newman","year":"2003","unstructured":"Newman KL, Almeida RP, Purcell AH et al (2003) Use of a green fluorescent strain for analysis of Xylella fastidiosa colonization of Vitis vinifera. Appl Environ Microbiol 69:7319\u20137327","journal-title":"Appl Environ Microbiol"},{"key":"5190_CR50","doi-asserted-by":"publisher","first-page":"101","DOI":"10.1007\/s12892-011-0070-y","volume":"15","author":"I Nongrum","year":"2012","unstructured":"Nongrum I, Kumar S, Kumaria S et al (2012) Genetic variation and gene flow estimation of Nepenthes khasiana Hook. F- A threatened insectivorous plant of India as revealed by RAPD markers. J Crop Sci Biotechnol 15:101\u2013105","journal-title":"J Crop Sci Biotechnol"},{"key":"5190_CR51","doi-asserted-by":"publisher","first-page":"187","DOI":"10.1139\/cjb-2017-0117","volume":"96","author":"AI Noor","year":"2018","unstructured":"Noor AI, Nava A, Cooke P et al (2018) Evidence for nonpathogenic relationships of Alternaria section Undifilum endophytes within three host locoweed plant species. Botany 96:187\u2013200","journal-title":"Botany"},{"key":"5190_CR52","doi-asserted-by":"publisher","first-page":"126","DOI":"10.1016\/j.sajb.2020.06.023","volume":"134","author":"AA Ogbe","year":"2020","unstructured":"Ogbe AA, Finnie JF, Van Staden J (2020) The role of endophytes in secondary metabolites accumulation in medicinal plants under abiotic stress. S Afr J Bot 134:126\u2013134","journal-title":"S Afr J Bot"},{"key":"5190_CR53","doi-asserted-by":"publisher","first-page":"721","DOI":"10.1007\/s00792-020-01189-7","volume":"24","author":"R Oses-Pedraza","year":"2020","unstructured":"Oses-Pedraza R, Torres-D\u00edaz C, Lav\u00edn P et al (2020) Root endophytic Penicillium promotes growth of Antarctic vascular plants by enhancing nitrogen mineralization. Extremophiles 24:721\u2013732","journal-title":"Extremophiles"},{"key":"5190_CR54","doi-asserted-by":"publisher","first-page":"1097","DOI":"10.1007\/s00425-016-2467-9","volume":"243","author":"SS Pandey","year":"2016","unstructured":"Pandey SS, Singh S, Babu CS et al (2016) Endophytes of opium poppy differentially modulate host plant productivity and genes for the biosynthetic pathway of benzylisoquinoline alkaloids. Planta 243:1097\u20131114","journal-title":"Planta"},{"key":"5190_CR55","doi-asserted-by":"publisher","first-page":"227","DOI":"10.1007\/s11099-010-0028-1","volume":"48","author":"A Pavlovi\u010d","year":"2010","unstructured":"Pavlovi\u010d A, Singerov\u00e1 L, Demko V et al (2010) Root nutrient uptake enhances photosynthetic assimilation in prey-deprived carnivorous pitcher plant Nepenthes talangensis. Photosynthetica 48:227\u2013233","journal-title":"Photosynthetica"},{"key":"5190_CR56","doi-asserted-by":"publisher","first-page":"341","DOI":"10.1007\/s00572-009-0288-4","volume":"20","author":"RS Quilliam","year":"2010","unstructured":"Quilliam RS, Jones DL (2010) Fungal root endophytes of the carnivorous plant Drosera rotundifolia. Mycorrhiza 20:341\u2013348","journal-title":"Mycorrhiza"},{"key":"5190_CR57","doi-asserted-by":"publisher","first-page":"583","DOI":"10.1007\/s11557-011-0795-5","volume":"11","author":"RS Quilliam","year":"2012","unstructured":"Quilliam RS, Jones DL (2012) Evidence for host-specificity of culturable fungal root endophytes from the carnivorous plant Pinguicula vulgaris (Common Butterwort). Mycol Progress 11:583\u2013585","journal-title":"Mycol Progress"},{"key":"5190_CR58","doi-asserted-by":"publisher","first-page":"1","DOI":"10.21769\/BioProtoc.2942","volume":"8","author":"A Redkar","year":"2018","unstructured":"Redkar A, Jaeger E, Doehlemann G (2018) Visualization of growth and morphology of fungal hyphae in planta using WGA-AF488 and propidium iodide co-staining. Bio-protocol 8:1\u20137","journal-title":"Bio-protocol"},{"key":"5190_CR59","doi-asserted-by":"publisher","first-page":"e0253721","DOI":"10.1128\/aem.02537-21","volume":"88","author":"V Riva","year":"2022","unstructured":"Riva V, Mapelli F, Bagnasco A et al (2022) A meta-analysis approach to defining the culturable core of plant endophytic bacterial communities. Appl Environ Microbiol 88:e0253721","journal-title":"Appl Environ Microbiol"},{"key":"5190_CR60","doi-asserted-by":"publisher","first-page":"1572","DOI":"10.1093\/bioinformatics\/btg180","volume":"19","author":"F Ronquist","year":"2003","unstructured":"Ronquist F, Huelsenbeck JP (2003) MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19:1572\u20131574","journal-title":"Bioinformatics"},{"key":"5190_CR61","doi-asserted-by":"publisher","first-page":"101087","DOI":"10.1016\/j.funeco.2021.101087","volume":"53","author":"JE Rueda-Almazan","year":"2021","unstructured":"Rueda-Almazan JE, Hernandez VM, Alcala-Martinez JR et al (2021) Spatial and temporal differences in the community structure of endophytic fungi in the carnivorous plant Pinguicula moranensis (Lentibulariaceae). Fungal Ecol 53:101087","journal-title":"Fungal Ecol"},{"key":"5190_CR62","doi-asserted-by":"publisher","first-page":"469","DOI":"10.1007\/s00248-015-0672-x","volume":"71","author":"M Saleem","year":"2016","unstructured":"Saleem M, Law AD, Moe LA (2016) Nicotiana roots recruit rare rhizosphere taxa as major root-inhabiting microbes. Microb Ecol 71:469\u2013472","journal-title":"Microb Ecol"},{"key":"5190_CR63","doi-asserted-by":"crossref","unstructured":"Schulz B, Boyle C (2006) What are Endophytes? In: Schulz BJE, Boyle CJC, Sieber TN (eds) Microbial Root Endophytes. Soil Biology, Vol 9, Springer, Berlin, Heidelberg, pp 1\u201313","DOI":"10.1007\/3-540-33526-9_1"},{"key":"5190_CR64","doi-asserted-by":"publisher","first-page":"369","DOI":"10.1093\/sysbio\/49.2.369","volume":"49","author":"MP Simmons","year":"2000","unstructured":"Simmons MP, Ochoterena H (2000) Gaps as characters in sequence-based phylogenetic analyses. Syst Biol 49:369\u2013381","journal-title":"Syst Biol"},{"key":"5190_CR65","doi-asserted-by":"publisher","first-page":"600417","DOI":"10.3389\/fmicb.2020.600417","volume":"11","author":"P Singh","year":"2021","unstructured":"Singh P, Singh RK, Li HB et al (2021a) Diazotrophic bacteria Pantoea dispersa and Enterobacter asburiae promote sugarcane growth by inducing nitrogen uptake and defense-related gene expression. Front Microbiol 11:600417","journal-title":"Front Microbiol"},{"key":"5190_CR66","doi-asserted-by":"publisher","first-page":"774707","DOI":"10.3389\/fmicb.2021.774707","volume":"12","author":"RK Singh","year":"2021","unstructured":"Singh RK, Singh P, Guo DJ et al (2021b) Root-derived endophytic diazotrophic bacteria Pantoea cypripedii AF1 and Kosakonia arachidis EF1 promote nitrogen assimilation and growth in sugarcane. Front Microbiol 12:774707","journal-title":"Front Microbiol"},{"key":"5190_CR67","first-page":"3","volume-title":"Microbial endophytes","author":"JK Stone","year":"2000","unstructured":"Stone JK, Bacon CW, White JF (2000) An overview of endophytic microbes: endophytism defined. In: Bacon CW, White JF (eds) Microbial endophytes. Dekker, New York, pp 3\u201330"},{"key":"5190_CR68","doi-asserted-by":"publisher","first-page":"195","DOI":"10.1080\/21501203.2012.719042","volume":"3","author":"YY Su","year":"2012","unstructured":"Su YY, Qi YL, Cai L (2012) Induction of sporulation in plant pathogenic fungi. Mycology 3:195\u2013200","journal-title":"Mycology"},{"key":"5190_CR69","doi-asserted-by":"publisher","first-page":"2522","DOI":"10.1038\/s41564-024-01766-y","volume":"9","author":"PF Sun","year":"2024","unstructured":"Sun PF, Lu MR, Liu YC et al (2024) An acidophilic fungus promotes prey digestion in a carnivorous plant. Nat Microbiol 9:2522\u20132537","journal-title":"Nat Microbiol"},{"key":"5190_CR70","doi-asserted-by":"publisher","first-page":"330","DOI":"10.1016\/j.syapm.2015.05.006","volume":"38","author":"Y Takeuchi","year":"2015","unstructured":"Takeuchi Y, Chaffron S, Salcher MM et al (2015) Bacterial diversity and composition in the fluid of pitcher plants of the genus Nepenthes. Syst Appl Microbiol 38:330\u2013339","journal-title":"Syst Appl Microbiol"},{"key":"5190_CR71","doi-asserted-by":"publisher","first-page":"4876","DOI":"10.1093\/nar\/25.24.4876","volume":"25","author":"JD Thompson","year":"1997","unstructured":"Thompson JD, Gibson TJ, Plewniak F et al (1997) The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25:4876\u20134882","journal-title":"Nucleic Acids Res"},{"key":"5190_CR72","doi-asserted-by":"publisher","first-page":"3957","DOI":"10.1128\/JCM.37.12.3957-3964.1999","volume":"37","author":"K Voigt","year":"1999","unstructured":"Voigt K, Cigelnik E, O\u2019Donnell K (1999) Phylogeny and PCR identification of clinically important Zygomycetes based on nuclear ribosomal-DNA sequence data. J Clin Microbiol 37:3957\u20133964","journal-title":"J Clin Microbiol"},{"key":"5190_CR73","doi-asserted-by":"publisher","first-page":"59","DOI":"10.1007\/s13225-021-00480-y","volume":"109","author":"K Voigt","year":"2021","unstructured":"Voigt K, James TY, Kirk PM et al (2021) Early-diverging fungal phyla: taxonomy, species concept, ecology, distribution, anthropogenic impact, and novel phylogenetic proposals. Fungal Divers 109:59\u201398","journal-title":"Fungal Divers"},{"key":"5190_CR74","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1016\/j.micres.2016.04.009","volume":"188","author":"W Wang","year":"2016","unstructured":"Wang W, Zhai Y, Cao L et al (2016) Endophytic bacterial and fungal microbiota in sprouts, roots and stems of rice (Oryza sativa L). Microbiol Res 188:1\u20138","journal-title":"Microbiol Res"},{"key":"5190_CR75","doi-asserted-by":"publisher","first-page":"2558","DOI":"10.1002\/ps.5527","volume":"75","author":"JF White","year":"2019","unstructured":"White JF, Kingsley KL, Zhang Q et al (2019) Review: Endophytic microbes and their potential applications in crop management. Pest Manag Sci 75:2558\u20132565","journal-title":"Pest Manag Sci"},{"key":"5190_CR76","doi-asserted-by":"publisher","first-page":"102483","DOI":"10.1016\/j.pbi.2023.102483","volume":"76","author":"K Wippel","year":"2023","unstructured":"Wippel K (2023) Plant and microbial features governing an endophytic lifestyle. Curr Opin Plant Biol 76:102483","journal-title":"Curr Opin Plant Biol"},{"key":"5190_CR77","doi-asserted-by":"publisher","first-page":"731","DOI":"10.1021\/np070624j","volume":"71","author":"SH Wu","year":"2008","unstructured":"Wu SH, Chen YW, Shao SC et al (2008) Ten-membered lactones from Phomopsis sp., an endophytic fungus of Azadirachta indica. J Nat Prod 71:731\u2013734","journal-title":"J Nat Prod"},{"key":"5190_CR78","doi-asserted-by":"publisher","first-page":"635","DOI":"10.1038\/nrmicro3330","volume":"12","author":"P Yarza","year":"2014","unstructured":"Yarza P, Yilmaz P, Pruesse E et al (2014) Uniting the classification of cultured and uncultured bacteria and archaea using 16S rRNA gene sequences. Nat Rev Microbiol 12:635\u2013645","journal-title":"Nat Rev Microbiol"},{"key":"5190_CR79","doi-asserted-by":"publisher","first-page":"175","DOI":"10.1016\/j.simyco.2014.08.001","volume":"78","author":"N Yilmaz","year":"2014","unstructured":"Yilmaz N, Visagie CM, Houbraken J et al (2014) Polyphasic taxonomy of the genus Talaromyces. Stud Mycol 78:175\u2013341","journal-title":"Stud Mycol"},{"key":"5190_CR80","doi-asserted-by":"publisher","first-page":"114727","DOI":"10.1016\/j.ecoenv.2023.114727","volume":"255","author":"J Yin","year":"2023","unstructured":"Yin J, Cui W, Xu Y et al (2023) Understanding the relative contributions of fungi and bacteria led nitrous oxide emissions in an acidic soil amended with industrial waste. Ecotoxicol Environ Saf 255:114727","journal-title":"Ecotoxicol Environ Saf"},{"key":"5190_CR81","doi-asserted-by":"publisher","first-page":"431","DOI":"10.1007\/s00203-007-0333-7","volume":"189","author":"GX Zhang","year":"2008","unstructured":"Zhang GX, Peng GX, Wang ET et al (2008) Diverse endophytic nitrogen-fixing bacteria isolated from wild rice Oryza rufipogon and description of Phytobacter diazotrophicus gen. nov. sp. nov. Arch Microbiol 189:431\u2013439","journal-title":"Arch Microbiol"}],"container-title":["Archives of Microbiology"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/link.springer.com\/content\/pdf\/10.1007\/s00203-026-05190-0.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/link.springer.com\/article\/10.1007\/s00203-026-05190-0","content-type":"text\/html","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/link.springer.com\/content\/pdf\/10.1007\/s00203-026-05190-0.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2026,9,15]],"date-time":"2026-09-15T11:07:11Z","timestamp":1789470431000},"score":1,"resource":{"primary":{"URL":"https:\/\/link.springer.com\/10.1007\/s00203-026-05190-0"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2026,9,15]]},"references-count":80,"journal-issue":{"issue":"12","published-print":{"date-parts":[[2026,12]]}},"alternative-id":["5190"],"URL":"https:\/\/doi.org\/10.1007\/s00203-026-05190-0","relation":{},"ISSN":["0302-8933","1432-072X"],"issn-type":[{"value":"0302-8933","type":"print"},{"value":"1432-072X","type":"electronic"}],"subject":[],"published":{"date-parts":[[2026,9,15]]},"assertion":[{"value":"15 June 2026","order":1,"name":"received","label":"Received","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"1 September 2026","order":2,"name":"revised","label":"Revised","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"1 September 2026","order":3,"name":"accepted","label":"Accepted","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"15 September 2026","order":4,"name":"first_online","label":"First Online","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"The authors declare no competing interests.","order":1,"name":"Ethics","label":"Conflict of interest","group":{"name":"EthicsHeading","label":"Declarations"}}],"article-number":"624"}}