{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,9,21]],"date-time":"2026-09-21T08:02:53Z","timestamp":1789977773454,"version":"4.0.1"},"reference-count":27,"publisher":"Springer Science and Business Media LLC","issue":"12","license":[{"start":{"date-parts":[[2026,9,21]],"date-time":"2026-09-21T00:00:00Z","timestamp":1789948800000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.springernature.com\/gp\/researchers\/text-and-data-mining"},{"start":{"date-parts":[[2026,9,21]],"date-time":"2026-09-21T00:00:00Z","timestamp":1789948800000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/www.springernature.com\/gp\/researchers\/text-and-data-mining"}],"content-domain":{"domain":["link.springer.com"],"crossmark-restriction":false},"short-container-title":["Arch Microbiol"],"published-print":{"date-parts":[[2026,12]]},"DOI":"10.1007\/s00203-026-05195-9","type":"journal-article","created":{"date-parts":[[2026,9,21]],"date-time":"2026-09-21T07:08:53Z","timestamp":1789974533000},"update-policy":"https:\/\/doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":0,"title":["Emticicia lacicola sp. nov., isolated from a freshwater reservoir"],"prefix":"10.1007","volume":"208","author":[{"given":"Hyun Ju","family":"Kim","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Ahyoung","family":"Choi","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Jaeduk","family":"Goh","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Mi-Hwa","family":"Lee","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Hyangmi","family":"Kim","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"297","published-online":{"date-parts":[[2026,9,21]]},"reference":[{"key":"5195_CR1","doi-asserted-by":"publisher","first-page":"D690","DOI":"10.1093\/nar\/gkac920","volume":"51","author":"BP Alcock","year":"2023","unstructured":"Alcock BP, Huynh W, Chalil R, Smith KW, Raphenya AR, Wlodarski MA, Edalatmand A, Petkau A, Syed SA, Tsang KK et al (2023) CARD 2023: expanded curation, support for machine learning, and resistome prediction at the Comprehensive Antibiotic Resistance Database. Nucleic Acids Res 51:D690\u2013D699. https:\/\/doi.org\/10.1093\/nar\/gkac920","journal-title":"Nucleic Acids Res"},{"key":"5195_CR2","doi-asserted-by":"publisher","first-page":"350","DOI":"10.1186\/1471-2105-7-350","volume":"7","author":"AF Auch","year":"2006","unstructured":"Auch AF, Henz SR, Holland BR, G\u00f6ker M (2006) Genome BLAST distance phylogenies inferred from whole plastid and whole mitochondrion genome sequences. BMC Bioinform 7:350. https:\/\/doi.org\/10.1186\/1471-2105-7-350","journal-title":"BMC Bioinform"},{"key":"5195_CR3","doi-asserted-by":"publisher","first-page":"75","DOI":"10.1186\/1471-2164-9-75","volume":"9","author":"RK Aziz","year":"2008","unstructured":"Aziz RK, Bartels D, Best AA, DeJongh M, Disz T, Edwards RA, Formsma K, Gerdes S, Glass EM, Kubal M, Meyer F, Olsen GJ, Robert R, Rodriguez A, Rohwer F, San Gil I, Shukla GD, Stevens R, Sullivan R, von Stein VA, Wilke A, Zagnitko O (2008) The RAST Server: rapid annotations using subsystems technology. BMC Genomics 9:75. https:\/\/doi.org\/10.1186\/1471-2164-9-75","journal-title":"BMC Genomics"},{"key":"5195_CR4","doi-asserted-by":"publisher","first-page":"W30","DOI":"10.1093\/nar\/gkx343","volume":"45","author":"C Bertelli","year":"2017","unstructured":"Bertelli C, Laird MR, Williams KP, Lau BY, Hoad G, Winsor GL, Brinkman FSL (2017) IslandViewer 4: expanded prediction of genomic islands for larger-scale datasets. Nucleic Acids Res 45:W30\u2013W35. https:\/\/doi.org\/10.1093\/nar\/gkx343","journal-title":"Nucleic Acids Res"},{"key":"5195_CR5","doi-asserted-by":"publisher","first-page":"W81","DOI":"10.1093\/nar\/gkz310","volume":"47","author":"K Blin","year":"2019","unstructured":"Blin K, Shaw S, Steinke K, Villebro R, Ziemert N, Weber T, Medema MH (2019) antiSMASH 5.0: updates to the secondary metabolite genome mining pipeline. Nucleic Acids Res 47:W81\u2013W87. https:\/\/doi.org\/10.1093\/nar\/gkz310","journal-title":"Nucleic Acids Res"},{"key":"5195_CR6","doi-asserted-by":"publisher","first-page":"5825","DOI":"10.1093\/molbev\/msab293","volume":"38","author":"CP Cantalapiedra","year":"2021","unstructured":"Cantalapiedra CP, Hernandez-Plaza A, Letunic I, Bork P, Huerta-Cepas J (2021) eggNOG-mapper v2: Functional Annotation, Orthology Assignments, and Domain Prediction at the Metagenomic Scale. Mol Biol Evol 38:5825\u20135829. https:\/\/doi.org\/10.1093\/molbev\/msab293","journal-title":"Mol Biol Evol"},{"key":"5195_CR7","doi-asserted-by":"publisher","first-page":"461","DOI":"10.1099\/ijsem.0.002516","volume":"68","author":"J Chun","year":"2018","unstructured":"Chun J, Oren A, Ventosa A, Christensen H, Arahal DR, da Costa MS, Rainey FA, Cho YH, Whitman WB (2018) Proposed minimal standards for the use of genome data for the taxonomy of prokaryotes. Int J Syst Evol Microbiol 68:461\u2013466. https:\/\/doi.org\/10.1099\/ijsem.0.002516","journal-title":"Int J Syst Evol Microbiol"},{"key":"5195_CR8","doi-asserted-by":"publisher","first-page":"368","DOI":"10.1007\/BF01734359","volume":"17","author":"J Felsenstein","year":"1981","unstructured":"Felsenstein J (1981) Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol 17:368\u2013376. https:\/\/doi.org\/10.1007\/BF01734359","journal-title":"J Mol Evol"},{"key":"5195_CR9","doi-asserted-by":"publisher","first-page":"406","DOI":"10.2307\/2412116","volume":"20","author":"WM Fitch","year":"1971","unstructured":"Fitch WM (1971) Toward defining the course of evolution: minimum change for a specific tree topology. Syst Zool 20:406\u2013416. https:\/\/doi.org\/10.2307\/2412116","journal-title":"Syst Zool"},{"key":"5195_CR10","doi-asserted-by":"publisher","first-page":"689","DOI":"10.1099\/ijs.0.059360-0","volume":"64","author":"YS Jeon","year":"2014","unstructured":"Jeon YS, Lee K, Park SC, Kim BS, Cho YJ, Ha SM, Chun J (2014) EzEditor: A versatile sequence alignment editor for both rRNA- and protein-coding genes. Int J Syst Evol Microbiol 64:689\u2013691. https:\/\/doi.org\/10.1099\/ijs.0.059360-0","journal-title":"Int J Syst Evol Microbiol"},{"issue":"12","key":"5195_CR11","doi-asserted-by":"publisher","first-page":"4358","DOI":"10.1099\/ijsem.0.000577","volume":"65","author":"Y Joung","year":"2015","unstructured":"Joung Y, Seo MA, Kang H, Kim H, Ahn TS, Cho JC, Joh K (2015) Emticicia aquatica sp. nov., a species of the family Cytophagaceae isolated from fresh water. Int J Syst Evol Microbiol 65(12):4358\u20134362. https:\/\/doi.org\/10.1099\/ijsem.0.000577","journal-title":"Int J Syst Evol Microbiol"},{"key":"5195_CR12","doi-asserted-by":"publisher","first-page":"726","DOI":"10.1016\/j.jmb.2015.11.006","volume":"428","author":"M Kanehisa","year":"2016","unstructured":"Kanehisa M, Sato Y, Morishima K (2016) BlastKOALA and GhostKOALA: KEGG Tools for Functional Characterization of Genome and Metagenome Sequences. J Mol Biol 428:726\u2013731. https:\/\/doi.org\/10.1016\/j.jmb.2015.11.006","journal-title":"J Mol Biol"},{"key":"5195_CR13","doi-asserted-by":"publisher","first-page":"3383","DOI":"10.1099\/ijsem.0.001205","volume":"66","author":"H Kang","year":"2016","unstructured":"Kang H, Kim H, Joung Y, Joh K (2016) Emticicia paludis sp. nov., isolated from wetland freshwater. Int J Syst Evol Microbiol 66:3383\u20133387. https:\/\/doi.org\/10.1099\/ijsem.0.001205","journal-title":"Int J Syst Evol Microbiol"},{"key":"5195_CR14","doi-asserted-by":"publisher","first-page":"2798","DOI":"10.1093\/molbev\/msv150","volume":"32","author":"V Lefort","year":"2015","unstructured":"Lefort V, Desper R, Gascuel O (2015) FastME 2.0: A comprehensive, accurate, and fast distance-based phylogeny inference program. Mol Biol Evol 32:2798\u20132800. https:\/\/doi.org\/10.1093\/molbev\/msv150","journal-title":"Mol Biol Evol"},{"key":"5195_CR15","doi-asserted-by":"publisher","first-page":"4647","DOI":"10.1093\/molbev\/msab199","volume":"38","author":"M Manni","year":"2021","unstructured":"Manni M, Berkeley MR, Seppey M, Sim\u00e3o FA, Zdobnov EM (2021) BUSCO update: novel and streamlined workflows along with broader and deeper phylogenetic coverage for scoring of eukaryotic, prokaryotic, and viral genomes. Mol Biol Evol 38:4647\u20134654. https:\/\/doi.org\/10.1093\/molbev\/msab199","journal-title":"Mol Biol Evol"},{"key":"5195_CR16","doi-asserted-by":"publisher","first-page":"2182","DOI":"10.1038\/s41467-019-10210-3","volume":"10","author":"JP Meier-Kolthoff","year":"2019","unstructured":"Meier-Kolthoff JP, G\u00f6ker M (2019) TYGS is an automated high-throughput platform for state-of-the-art genome-based taxonomy. Nat Commun 10:2182. https:\/\/doi.org\/10.1038\/s41467-019-10210-3","journal-title":"Nat Commun"},{"key":"5195_CR17","doi-asserted-by":"publisher","first-page":"1530","DOI":"10.1093\/molbev\/msaa015","volume":"37","author":"BQ Minh","year":"2020","unstructured":"Minh BQ, Schmidt HA, Chernomor O, Schrempf D, Woodhams MD, von Haeseler A, Lanfear R (2020) IQ-TREE 2: New models and efficient methods for phylogenetic inference in the genomic era. Mol Biol Evol 37:1530\u20131534. https:\/\/doi.org\/10.1093\/molbev\/msaa015","journal-title":"Mol Biol Evol"},{"key":"5195_CR19","doi-asserted-by":"publisher","first-page":"104","DOI":"10.1099\/00207713-27-2-104","volume":"27","author":"DE Minnikin","year":"1977","unstructured":"Minnikin DE, Patel PV, Alshamaony L, Goodfellow M (1977) Polar lipid composition in the classification of Nocardia and related bacteria. Int J Syst Bacteriol 27:104\u2013117. https:\/\/doi.org\/10.1099\/00207713-27-2-104","journal-title":"Int J Syst Bacteriol"},{"key":"5195_CR18","doi-asserted-by":"publisher","first-page":"233","DOI":"10.1016\/0167-7012(84)90018-6","volume":"2","author":"DE Minnikin","year":"1984","unstructured":"Minnikin DE, O\u2019Donnell AG, Goodfellow M, Alderson G, Athalye M, Schaal A, Parlett JH (1984) An integrated procedure for the extraction of bacterial isoprenoid quinones and polar lipids. J Microbiol Methods 2:233\u2013241. https:\/\/doi.org\/10.1016\/0167-7012(84)90018-6","journal-title":"J Microbiol Methods"},{"issue":"6","key":"5195_CR20","doi-asserted-by":"publisher","first-page":"1703","DOI":"10.1099\/ijsem.0.001840","volume":"67","author":"HTT Ngo","year":"2017","unstructured":"Ngo HTT, Trinh H, Yang JE, Won KH, Chu DH, Kook M, Yi TH (2017) Emticicia aquatilis sp. nov., isolated from a freshwater sample. Int J Syst Evol Microbiol 67(6):1703\u20131708. https:\/\/doi.org\/10.1099\/ijsem.0.001840","journal-title":"Int J Syst Evol Microbiol"},{"issue":"8","key":"5195_CR21","doi-asserted-by":"publisher","first-page":"2496","DOI":"10.1099\/ijs.0.000292","volume":"65","author":"SE Park","year":"2015","unstructured":"Park SE, Lee S, Kim H, Ahn TY (2015) Emticicia sediminis sp. nov. isolated from sediment of a shallow stream. Int J Syst Evol Microbiol 65(8):2496\u20132499. https:\/\/doi.org\/10.1099\/ijs.0.000292","journal-title":"Int J Syst Evol Microbiol"},{"key":"5195_CR22","doi-asserted-by":"publisher","first-page":"991","DOI":"10.1099\/ijs.0.64086-0","volume":"56","author":"P Saha","year":"2006","unstructured":"Saha P, Chakrabarti T (2006) Emticicia oligotrophica gen. nov., sp. nov., a new member of the family Flexibacteraceae isolated from warm spring water. Int J Syst Evol Microbiol 56:991\u2013995. https:\/\/doi.org\/10.1099\/ijs.0.64086-0","journal-title":"Int J Syst Evol Microbiol"},{"key":"5195_CR23","doi-asserted-by":"publisher","first-page":"406","DOI":"10.1093\/oxfordjournals.molbev.a040454","volume":"4","author":"N Saitou","year":"1987","unstructured":"Saitou N, Nei M (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406\u2013425. https:\/\/doi.org\/10.1093\/oxfordjournals.molbev.a040454","journal-title":"Mol Biol Evol"},{"key":"5195_CR24","doi-asserted-by":"publisher","first-page":"93","DOI":"10.3389\/fmicb.2011.00093","volume":"2","author":"F Thomas","year":"2011","unstructured":"Thomas F, Hehemann JH, Rebuffet E, Czjzek M, Michel G (2011) Environmental and gut Bacteroidetes: the food connection. Front Microbiol 2:93. https:\/\/doi.org\/10.3389\/fmicb.2011.00093","journal-title":"Front Microbiol"},{"key":"5195_CR25","doi-asserted-by":"publisher","DOI":"10.1002\/0471250953.bi0203s00","author":"JD Thompson","year":"2002","unstructured":"Thompson JD, Gibson TJ, Higgins DG (2002) Multiple sequence alignment using ClustalW and ClustalX. Curr Protoc Bioinforma Chap 2:Unit. https:\/\/doi.org\/10.1002\/0471250953.bi0203s00. 2.3","journal-title":"Curr Protoc Bioinforma Chap 2:Unit"},{"key":"5195_CR26","doi-asserted-by":"publisher","first-page":"390","DOI":"10.1186\/s12859-023-05527-2","volume":"24","author":"D-F Zhang","year":"2023","unstructured":"Zhang D-F, He W, Shao Z, Ahmed I, Zhang Y, Li W-J, Zhao Z (2023) EasyCGTree: a pipeline for prokaryotic phylogenomic analysis based on core gene sets. BMC Bioinformatics 24:390. https:\/\/doi.org\/10.1186\/s12859-023-05527-2","journal-title":"BMC Bioinformatics"},{"key":"5195_CR27","doi-asserted-by":"publisher","first-page":"W115","DOI":"10.1093\/nar\/gkad328","volume":"51","author":"J Zheng","year":"2023","unstructured":"Zheng J, Ge Q, Yan Y, Zhang X, Huang L, Yin Y (2023) dbCAN3: automated carbohydrate-active enzyme and substrate annotation. Nucleic Acids Res 51:W115\u2013W121. https:\/\/doi.org\/10.1093\/nar\/gkad328","journal-title":"Nucleic Acids Res"}],"container-title":["Archives of Microbiology"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/link.springer.com\/content\/pdf\/10.1007\/s00203-026-05195-9.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/link.springer.com\/article\/10.1007\/s00203-026-05195-9","content-type":"text\/html","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/link.springer.com\/content\/pdf\/10.1007\/s00203-026-05195-9.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2026,9,21]],"date-time":"2026-09-21T07:08:54Z","timestamp":1789974534000},"score":1,"resource":{"primary":{"URL":"https:\/\/link.springer.com\/10.1007\/s00203-026-05195-9"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2026,9,21]]},"references-count":27,"journal-issue":{"issue":"12","published-print":{"date-parts":[[2026,12]]}},"alternative-id":["5195"],"URL":"https:\/\/doi.org\/10.1007\/s00203-026-05195-9","relation":{},"ISSN":["0302-8933","1432-072X"],"issn-type":[{"value":"0302-8933","type":"print"},{"value":"1432-072X","type":"electronic"}],"subject":[],"published":{"date-parts":[[2026,9,21]]},"assertion":[{"value":"13 April 2026","order":1,"name":"received","label":"Received","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"3 September 2026","order":2,"name":"revised","label":"Revised","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"3 September 2026","order":3,"name":"accepted","label":"Accepted","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"21 September 2026","order":4,"name":"first_online","label":"First Online","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"The authors declare no competing interests.","order":1,"name":"Ethics","label":"Conflict of interest","group":{"name":"EthicsHeading","label":"Declarations"}},{"value":"This article contains no studies involving human participants or animals conducted by any of the authors.","order":2,"name":"Ethics","label":"Ethical approval","group":{"name":"EthicsHeading","label":"Declarations"}}],"article-number":"654"}}