{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2022,4,3]],"date-time":"2022-04-03T07:11:08Z","timestamp":1648969868941},"reference-count":35,"publisher":"Springer Science and Business Media LLC","issue":"15","license":[{"start":{"date-parts":[[2014,4,10]],"date-time":"2014-04-10T00:00:00Z","timestamp":1397088000000},"content-version":"tdm","delay-in-days":0,"URL":"http:\/\/www.springer.com\/tdm"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["Anal Bioanal Chem"],"published-print":{"date-parts":[[2014,6]]},"DOI":"10.1007\/s00216-014-7787-7","type":"journal-article","created":{"date-parts":[[2014,4,9]],"date-time":"2014-04-09T02:44:15Z","timestamp":1397011455000},"page":"3755-3762","source":"Crossref","is-referenced-by-count":1,"title":["Specific enrichment of prokaryotic DNA using a recombinant DNA-binding protein"],"prefix":"10.1007","volume":"406","author":[{"given":"Natalia","family":"Sandetskaya","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Andreas","family":"Naumann","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Katharina","family":"Hennig","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Dirk","family":"Kuhlmeier","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"297","published-online":{"date-parts":[[2014,4,10]]},"reference":[{"key":"7787_CR1","doi-asserted-by":"crossref","first-page":"551","DOI":"10.1039\/b611169f","volume":"2","author":"I Ghosh","year":"2006","unstructured":"Ghosh I, Stains CI, Ooi AT, Segal DJ (2006) Direct detection of double-stranded DNA: molecular methods and applications for DNA diagnostics. Mol Biosyst 2:551\u2013560","journal-title":"Mol Biosyst"},{"key":"7787_CR2","doi-asserted-by":"crossref","first-page":"2551","DOI":"10.1007\/s00216-010-4096-7","volume":"398","author":"R Helwa","year":"2010","unstructured":"Helwa R, Hoheisel JD (2010) Analysis of DNA-protein interactions: from nitrocellulose filter binding assays to microarray studies. Anal Bioanal Chem 398:2551\u20132561","journal-title":"Anal Bioanal Chem"},{"key":"7787_CR3","doi-asserted-by":"crossref","first-page":"293","DOI":"10.1515\/bmc.2011.023","volume":"2","author":"Z Zheng","year":"2011","unstructured":"Zheng Z, Wang Y (2011) DNA binding proteins: outline of functional classification. BioMolecular Concepts 2:293\u2013303","journal-title":"BioMolecular Concepts"},{"key":"7787_CR4","doi-asserted-by":"crossref","first-page":"645","DOI":"10.2174\/1568026033452384","volume":"3","author":"DK Lee","year":"2003","unstructured":"Lee DK, Seol W, Kim JS (2003) Custom DNA-binding proteins and artificial transcription factors. Curr Top Med Chem 3:645\u2013657","journal-title":"Curr Top Med Chem"},{"key":"7787_CR5","doi-asserted-by":"crossref","first-page":"45","DOI":"10.1021\/ar050158u","volume":"39","author":"M Dhanasekaran","year":"2006","unstructured":"Dhanasekaran M, Negi S, Sugiura Y (2006) Designer zinc finger proteins: tools for creating artificial DNA-binding functional proteins. Acc Chem Res 39:45\u201352","journal-title":"Acc Chem Res"},{"key":"7787_CR6","doi-asserted-by":"crossref","first-page":"57","DOI":"10.1016\/S0162-0134(00)00154-9","volume":"82","author":"M Nagaoka","year":"2000","unstructured":"Nagaoka M, Sugiura Y (2000) Artificial zinc finger peptides: creation, DNA recognition, and gene regulation. J Inorg Biochem 82:57\u201363","journal-title":"J Inorg Biochem"},{"key":"7787_CR7","first-page":"627","volume":"6","author":"C Disqu\u00e9","year":"2007","unstructured":"Disqu\u00e9 C (2007) Einfluss der DNA-Extraktion auf die PCR-Detektion von Sepsiserregern (publication in German). BIOspektrum 6:627\u2013629","journal-title":"BIOspektrum"},{"key":"7787_CR8","doi-asserted-by":"crossref","first-page":"207","DOI":"10.1016\/j.cimid.2007.10.005","volume":"32","author":"M Handschur","year":"2009","unstructured":"Handschur M, Karlic H, Hertel C, Pfeilst\u00f6cker M, Haslberger AG (2009) Preanalytic removal of human DNA eliminates false signals in general 16S rDNA PCR monitoring of bacterial pathogens in blood. Comp Immunol Microbiol Infect Dis 32:207\u2013219","journal-title":"Comp Immunol Microbiol Infect Dis"},{"key":"7787_CR9","doi-asserted-by":"crossref","first-page":"2629","DOI":"10.1128\/JCM.00821-09","volume":"47","author":"WL Hansen","year":"2009","unstructured":"Hansen WL, Bruggeman CA, Wolffs PF (2009) Evaluation of new preanalysis sample treatment tools and DNA isolation protocols to improve bacterial pathogen detection in whole blood. J Clin Microbiol 47:2629\u20132631","journal-title":"J Clin Microbiol"},{"key":"7787_CR10","doi-asserted-by":"crossref","first-page":"e72349","DOI":"10.1371\/journal.pone.0072349","volume":"8","author":"AJM Loonen","year":"2013","unstructured":"Loonen AJM, Bos MP, van Meerbergen B, Neerken S, Catsburg A, Dobbelaer I, Penterman R, Maertens G, van de Wiel P, Savelkoul P, van den Brule AJC (2013) Comparison of pathogen DNA isolation methods from large volumes of whole blood to improve molecular diagnosis of bloodstream infections. PLoS ONE 8:e72349. doi: 10.1371\/journal.pone.0072349","journal-title":"PLoS ONE"},{"key":"7787_CR11","doi-asserted-by":"crossref","first-page":"8850","DOI":"10.1073\/pnas.85.23.8850","volume":"85","author":"Y Yang","year":"1988","unstructured":"Yang Y, Ames GF (1988) DNA gyrase binds to the family of prokaryotic repetitive extragenic palindromic sequences. Proc Natl Acad Sci U S A 85:8850\u20138854","journal-title":"Proc Natl Acad Sci U S A"},{"key":"7787_CR12","doi-asserted-by":"crossref","first-page":"755","DOI":"10.1093\/nar\/gkq799","volume":"39","author":"NM Baker","year":"2011","unstructured":"Baker NM, Weigand S, Maar-Mathias S, Mondragon A (2011) Solution structures of DNA-bound gyrase. Nucleic Acids Res 39:755\u2013766","journal-title":"Nucleic Acids Res"},{"key":"7787_CR13","doi-asserted-by":"crossref","first-page":"6833","DOI":"10.1093\/nar\/10.21.6833","volume":"10","author":"NP Higgins","year":"1982","unstructured":"Higgins NP, Cozzarelli NR (1982) The binding of gyrase to DNA: analysis by retention by nitrocellulose filters. Nucleic Acids Res 10:6833\u20136847","journal-title":"Nucleic Acids Res"},{"key":"7787_CR14","doi-asserted-by":"crossref","first-page":"490","DOI":"10.1016\/j.biochi.2007.02.012","volume":"89","author":"M N\u00f6llmann","year":"2007","unstructured":"N\u00f6llmann M, Crisona NJ, Arimondo PB (2007) Thirty years of Escherichia coli DNA gyrase: from in vivo function to single-molecule mechanism. Biochimie 89:490\u2013499","journal-title":"Biochimie"},{"key":"7787_CR15","doi-asserted-by":"crossref","first-page":"1399","DOI":"10.1093\/nar\/19.7.1399","volume":"19","author":"RJ Reece","year":"1991","unstructured":"Reece RJ, Maxwell A (1991) The C-terminal domain of the Escherichia coli DNA gyrase A subunit is a DNA-binding protein. Nucleic Acids Res 19:1399\u20131405","journal-title":"Nucleic Acids Res"},{"key":"7787_CR16","doi-asserted-by":"crossref","first-page":"335","DOI":"10.3109\/10409239109114072","volume":"26","author":"RJ Reece","year":"1991","unstructured":"Reece RJ, Maxwell A (1991) DNA gyrase: structure and function. Crit Rev Biochem Mol Biol 26:335\u2013375","journal-title":"Crit Rev Biochem Mol Biol"},{"key":"7787_CR17","doi-asserted-by":"crossref","first-page":"10893","DOI":"10.1093\/nar\/gks852","volume":"40","author":"MA Lanz","year":"2012","unstructured":"Lanz MA, Klostermeier D (2012) The GyrA-box determines the geometry of DNA bound to gyrase and couples DNA binding to the nucleotide cycle. Nucleic Acids Res 40:10893\u201310903","journal-title":"Nucleic Acids Res"},{"key":"7787_CR18","doi-asserted-by":"crossref","first-page":"464","DOI":"10.1128\/JCM.37.2.464-466.1999","volume":"37","author":"A Klaussegger","year":"1999","unstructured":"Klaussegger A, Hell M, Berger A, Zinober K, Baier S, Jones N, Sperl W, Kofler B (1999) Gram type-specific broad-range PCR amplification for rapid detection of 62 pathogenic bacteria. J Clin Microbiol 37:464\u2013466","journal-title":"J Clin Microbiol"},{"key":"7787_CR19","first-page":"15","volume":"12","author":"RD McCurdy","year":"2008","unstructured":"McCurdy RD, McGrath JJ, Mackay-Sim A (2008) Validation of the comparative quantification method of real-time PCR analysis and a cautionary tale of housekeeping gene selection. Gene Ther Mol Biol 12:15\u201324","journal-title":"Gene Ther Mol Biol"},{"key":"7787_CR20","doi-asserted-by":"crossref","first-page":"3019","DOI":"10.1016\/j.watres.2009.04.017","volume":"43","author":"AF Maheux","year":"2009","unstructured":"Maheux AF, Picard FJ, Boissinot M, Bissonnette L, Paradis S, Bergeron MG (2009) Analytical comparison of nine PCR primer sets designed to detect the presence of Escherichia coli\/Shigella in water samples. Water Res 43:3019\u20133028","journal-title":"Water Res"},{"key":"7787_CR21","doi-asserted-by":"crossref","first-page":"1654","DOI":"10.1128\/JCM.30.7.1654-1660.1992","volume":"30","author":"OG Brakstad","year":"1992","unstructured":"Brakstad OG, Aasbakk K, Maeland JA (1992) Detection of Staphylococcus aureus by polymerase chain reaction amplification of the nuc gene. J Clin Microbiol 30:1654\u20131660","journal-title":"J Clin Microbiol"},{"key":"7787_CR22","doi-asserted-by":"crossref","first-page":"3402","DOI":"10.1128\/JCM.37.10.3402-3404.1999","volume":"37","author":"N Caroll","year":"1999","unstructured":"Caroll N, Adamson P, Okhravi N (1999) Elimination of bacterial DNA from TaqDNA polymerases by restriction endonuclease digestion. J Clin Microbiol 37:3402\u20133404","journal-title":"J Clin Microbiol"},{"key":"7787_CR23","doi-asserted-by":"crossref","first-page":"1747","DOI":"10.1128\/JCM.38.5.1747-1752.2000","volume":"38","author":"CE Corless","year":"2000","unstructured":"Corless CE, Guiver M, Borrow R, Edwards-Jones V, Kaczmarski EB, Fox AJ (2000) Contamination and sensitivity issues with a realtime universal 16S rRNA PCR. J Clin Microbiol 38:1747\u20131752","journal-title":"J Clin Microbiol"},{"key":"7787_CR24","doi-asserted-by":"crossref","first-page":"646","DOI":"10.1128\/JCM.31.3.646-652.1993","volume":"31","author":"A Meier","year":"1993","unstructured":"Meier A, Persing DH, Finken M, B\u00f6ttger EC (1993) Elimination of contaminating DNA within polymerase chain reaction reagents: implications for a general approach to detection of uncultured pathogens. J Clin Microbiol 31:646\u2013652","journal-title":"J Clin Microbiol"},{"key":"7787_CR25","doi-asserted-by":"crossref","first-page":"41","DOI":"10.1016\/j.diagmicrobio.2008.07.011","volume":"66","author":"H M\u00fchl","year":"2010","unstructured":"M\u00fchl H, Kochem AJ, Disqu\u00e9 C, Sakka SG (2010) Activity and DNA contamination of commercial polymerase chain reaction reagents for the universal 16S rDNA real-time polymerase chain reaction detection of bacterial pathogens in blood. Diagn Microbiol Infect Dis 66:41\u201349","journal-title":"Diagn Microbiol Infect Dis"},{"key":"7787_CR26","doi-asserted-by":"crossref","first-page":"231","DOI":"10.1385\/MB:22:3:231","volume":"22","author":"S Klaschik","year":"2002","unstructured":"Klaschik S, Lehmann LE, Raadts A, Hoeft A, Stuber F (2002) Comparison of different decontamination methods for reagents to detect low concentrations of bacterial 16S DNA by real-time-PCR. Mol Biotechnol 22:231\u2013242","journal-title":"Mol Biotechnol"},{"key":"7787_CR27","doi-asserted-by":"crossref","first-page":"3316","DOI":"10.1128\/JCM.00584-11","volume":"49","author":"H Niimi","year":"2011","unstructured":"Niimi H, Mori M, Tabata H, Minami H, Ueno T, Hayashi S, Kitajima I (2011) A novel eukaryote-made thermostable DNA polymerase which is free from bacterial DNA contamination. J Clin Microbiol 49:3316\u20133320","journal-title":"J Clin Microbiol"},{"key":"7787_CR28","unstructured":"Van Meerbergen B, Piciu OM, Gill R, Schmidt KA, Neerken S, Ponjee M, Unay ZS, Penterman R, van de Wiel P (2011) Selective lysis of cells. WIPO Patent Application WO\/2011\/070507"},{"key":"7787_CR29","doi-asserted-by":"crossref","first-page":"1413","DOI":"10.1099\/mic.0.26560-0","volume":"150","author":"RA Cox","year":"2004","unstructured":"Cox RA (2004) Quantitative relationships for specific growth rates and macromolecular compositions of Mycobacterium tuberculosis, Streptomyces coelicolor A3(2) and Escherichia coli B\/r: an integrative theoretical approach. Microbiology 150:1413\u20131426","journal-title":"Microbiology"},{"key":"7787_CR30","doi-asserted-by":"crossref","first-page":"5932","DOI":"10.1103\/PhysRevE.60.5932","volume":"60","author":"MS Vieira","year":"1999","unstructured":"Vieira MS (1999) Statistics of DNA sequences: a low-frequency analysis. Phys Rev 60:5932\u20135937","journal-title":"Phys Rev"},{"key":"7787_CR31","doi-asserted-by":"crossref","first-page":"1209","DOI":"10.1128\/JCM.34.5.1209-1215.1996","volume":"34","author":"G Mangiapan","year":"1996","unstructured":"Mangiapan G, Vokurka M, Schouls L, Cadranel J, Lecossier D, van Embden J, Hance AJ (1996) Sequence capture-PCR improves detection of mycobacterial DNA in clinical specimens. J Clin Microbiol 34:1209\u20131215","journal-title":"J Clin Microbiol"},{"key":"7787_CR32","doi-asserted-by":"crossref","first-page":"1570","DOI":"10.1373\/clinchem.2007.091389","volume":"53","author":"NJ Parham","year":"2007","unstructured":"Parham NJ, Picard FJ, Peytavi R, Gagnon M, Seyrig G, Gagn\u00e9 PA, Boissinot M, Bergeron MG (2007) Specific magnetic bead based capture of genomic DNA from clinical samples: application to the detection of group B streptococci in vaginal\/anal swabs. Clin Chem 53:1570\u20131576","journal-title":"Clin Chem"},{"key":"7787_CR33","doi-asserted-by":"crossref","first-page":"1678","DOI":"10.1002\/btpr.492","volume":"26","author":"S Peeters","year":"2010","unstructured":"Peeters S, Stakenborg T, Colle F, Liu C, Lagae L, Van Ranst M (2010) Real-time PCR to study the sequence specific magnetic purification of DNA. Biotechnol Prog 26:1678\u20131684","journal-title":"Biotechnol Prog"},{"key":"7787_CR34","doi-asserted-by":"crossref","first-page":"1050","DOI":"10.1128\/JCM.02242-08","volume":"47","author":"S Sachse","year":"2009","unstructured":"Sachse S, Straube E, Lehmann M, Bauer M, Russwurm S, Schmidt KH (2009) Truncated human cytidylate-phosphate-deoxyguanylate-binding protein for improved nucleic acid amplification technique-based detection of bacterial species in human samples. J Clin Microbiol 47:1050\u20131057","journal-title":"J Clin Microbiol"},{"key":"7787_CR35","first-page":"631","volume":"10","author":"J Turek-Plewa","year":"2005","unstructured":"Turek-Plewa J, Jagodzi\u0144ski PP (2005) The role of mammalian DNA methyltransferases in the regulation of gene expression. Cell Mol Biol Lett 10:631\u2013647","journal-title":"Cell Mol Biol Lett"}],"container-title":["Analytical and Bioanalytical Chemistry"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/s00216-014-7787-7.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/article\/10.1007\/s00216-014-7787-7\/fulltext.html","content-type":"text\/html","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/s00216-014-7787-7","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2020,8,17]],"date-time":"2020-08-17T13:07:24Z","timestamp":1597669644000},"score":1,"resource":{"primary":{"URL":"http:\/\/link.springer.com\/10.1007\/s00216-014-7787-7"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2014,4,10]]},"references-count":35,"journal-issue":{"issue":"15","published-print":{"date-parts":[[2014,6]]}},"alternative-id":["7787"],"URL":"https:\/\/doi.org\/10.1007\/s00216-014-7787-7","relation":{},"ISSN":["1618-2642","1618-2650"],"issn-type":[{"value":"1618-2642","type":"print"},{"value":"1618-2650","type":"electronic"}],"subject":[],"published":{"date-parts":[[2014,4,10]]}}}