{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,10,7]],"date-time":"2026-10-07T18:16:49Z","timestamp":1791397009107,"version":"4.3.3"},"reference-count":33,"publisher":"Springer Science and Business Media LLC","issue":"5","license":[{"start":{"date-parts":[[2005,10,6]],"date-time":"2005-10-06T00:00:00Z","timestamp":1128556800000},"content-version":"tdm","delay-in-days":0,"URL":"http:\/\/www.springer.com\/tdm"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["J Mol Evol"],"published-print":{"date-parts":[[2005,11]]},"DOI":"10.1007\/s00239-004-0336-9","type":"journal-article","created":{"date-parts":[[2005,10,6]],"date-time":"2005-10-06T12:26:18Z","timestamp":1128601578000},"page":"620-626","source":"Crossref","is-referenced-by-count":75,"title":["Mitogenomic Analyses Place the Gharial (Gavialis gangeticus) on the Crocodile Tree and Provide Pre-K\/T Divergence Times for Most Crocodilians"],"prefix":"10.1007","volume":"61","author":[{"given":"Axel","family":"Janke","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Anette","family":"Gullberg","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Sandrine","family":"Hughes","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Ramesh K.","family":"Aggarwal","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Ulfur","family":"Arnason","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"297","published-online":{"date-parts":[[2005,10,6]]},"reference":[{"key":"336_CR1","first-page":"1","volume":"28","author":"J Adachi","year":"1996","unstructured":"Adachi J, Hasegawa M (1996) MOLPHY version 2.3: Programs for molecular phylogenetics based on maximum likelihood. Inst Stat Math, Tokyo. Comput Sci Monogr 28:1\u2013150","journal-title":"Comput Sci Monogr"},{"key":"336_CR2","doi-asserted-by":"crossref","first-page":"10601","DOI":"10.1073\/pnas.91.22.10601","volume":"91","author":"RK Aggarwal","year":"1994","unstructured":"Aggarwal RK, Majumdar KC, Lang JW, Singh L (1994) Generic affinities among crocodilians as revealed by DNA fingerprinting with a Bkm-derived probe. Proc Natl Acad Sci USA 91:10601\u201310605","journal-title":"Proc Natl Acad Sci USA"},{"key":"336_CR3","doi-asserted-by":"crossref","first-page":"62","DOI":"10.1038\/35102048","volume":"414","author":"JD Archibald","year":"2001","unstructured":"Archibald JD, Averianov AO, Ekdale EG (2001) Late Cretaceous relatives of rabbits, rodents, and other extant eutherian mammals. Nature 414:62\u201365","journal-title":"Nature"},{"key":"336_CR4","doi-asserted-by":"crossref","first-page":"569","DOI":"10.1007\/s002390010060","volume":"50","author":"U Arnason","year":"2000","unstructured":"Arnason U, Gullberg A, Gretarsdottir S, Ursing B, Janke A (2000) The complete mitochondrial genome of the sperm whale and the establishment of a new molecular reference for estimating eutherian divergence dates. J Mol Evol 50:569\u2013578","journal-title":"J Mol Evol"},{"key":"336_CR5","doi-asserted-by":"crossref","first-page":"409","DOI":"10.1007\/BF02101113","volume":"30","author":"MJ Benton","year":"1990","unstructured":"Benton MJ (1990) Phylogeny of the major tetrapod groups: morphological data and divergence dates. J Mol Evol 30:409\u2013424","journal-title":"J Mol Evol"},{"key":"336_CR6","doi-asserted-by":"crossref","first-page":"479","DOI":"10.1093\/sysbio\/46.3.479","volume":"46","author":"CA Brochu","year":"1997","unstructured":"Brochu CA (1997) Morphology, fossils, divergence timing, and the phylogenetic relationships of Gavialis. Syst Biol 46:479\u2013522","journal-title":"Syst Biol"},{"key":"336_CR7","doi-asserted-by":"crossref","first-page":"7","DOI":"10.1666\/0022-3360(2004)078<0007:POCASW>2.0.CO;2","volume":"78","author":"CA Brochu","year":"2004","unstructured":"Brochu CA (2004) Patterns of calibration age sensitivity with quartet dating methods. J Paleont 78:7\u201330","journal-title":"J Paleont"},{"key":"336_CR8","doi-asserted-by":"crossref","first-page":"1109","DOI":"10.1126\/science.275.5303.1109","volume":"275","author":"A Cooper","year":"1997","unstructured":"Cooper A, Penny D (1997) Mass survival of birds across the Cretaceous\u2013Tertiary boundary: molecular evidence. Science 275:1109\u20131113","journal-title":"Science"},{"key":"336_CR9","doi-asserted-by":"crossref","first-page":"397","DOI":"10.1007\/978-1-4615-6971-8_8","volume-title":"Evolutionary biology, Vol 16","author":"LD Densmore","year":"1983","unstructured":"Densmore LD (1983) Biochemical and immunological systematics of the order Crocodilia. In: Hecht MK, Wallace B, Prance GH (eds) Evolutionary biology, Vol 16. Plenum, New York, pp 397\u2013465"},{"key":"336_CR10","doi-asserted-by":"crossref","first-page":"602","DOI":"10.2307\/1446388","volume":"1991","author":"LD Densmore","year":"1991","unstructured":"Densmore LD, White PS (1991) The systematics and evolution of the Crocodilia as suggested by restriction endonuclease analysis of mitochondrial and nuclear ribosomal DNA. Copeia 1991:602\u2013615","journal-title":"Copeia"},{"key":"336_CR11","doi-asserted-by":"crossref","first-page":"662","DOI":"10.1093\/bioinformatics\/17.7.662","volume":"17","author":"A Drummond","year":"2001","unstructured":"Drummond A, Strimmer K (2001) PAL: an object-oriented programming library for molecular evolution and phylogenetics. Bioinformatics 17:662\u2013663","journal-title":"Bioinformatics"},{"key":"336_CR12","volume-title":"Phylogenetic Inference Programs (PHYLIP)","author":"J Felsenstein","year":"1993","unstructured":"Felsenstein J (1993) Phylogenetic Inference Programs (PHYLIP). University of Washington, Seattle, and University Herbarium, University of California, Berkeley"},{"key":"336_CR13","doi-asserted-by":"crossref","first-page":"152","DOI":"10.1006\/mpev.1993.1015","volume":"2","author":"J Gatesy","year":"1993","unstructured":"Gatesy J, DeSalle R, Wheeler WC (1993) Alignment-ambiguous nucleotide site and the exclusion of systematic data. Mol Phylogenet Evol 2:152\u2013157","journal-title":"Mol Phylogenet Evol"},{"key":"336_CR14","doi-asserted-by":"crossref","first-page":"403","DOI":"10.1080\/10635150390197037","volume":"52","author":"J Gatesy","year":"2003","unstructured":"Gatesy J, Amato G, Norell M, DeSalle R, Hayashi C (2003) Combined support for wholesale taxic atavism in gavialine crocodylians. Syst Biol 52:403\u2013422","journal-title":"Syst Biol"},{"key":"336_CR15","doi-asserted-by":"crossref","first-page":"342","DOI":"10.1080\/10635150490423971","volume":"53","author":"J Gatesy","year":"2004","unstructured":"Gatesy J, Baker RH, Hayashi C (2004) Inconsistencies in arguments for the supertree approach: supermatrices versus supertrees of Crocodylia. Syst Biol 53:342\u2013355","journal-title":"Syst Biol"},{"key":"336_CR16","doi-asserted-by":"crossref","first-page":"386","DOI":"10.1080\/10635150390197028","volume":"52","author":"J Harshman","year":"2003","unstructured":"Harshman J, Huddleston CJ, Bollback JP, Parsons TJ, Braun MJ (2003) True and false gharials: a nuclear gene phylogeny of crocodylia. Syst Biol 52:386\u2013402","journal-title":"Syst Biol"},{"key":"336_CR17","doi-asserted-by":"crossref","first-page":"193","DOI":"10.1016\/1055-7903(92)90015-9","volume":"1","author":"CA Hass","year":"1992","unstructured":"Hass CA, Hoffman MA, Densmore LD, Maxson LR (1992) Crocodilian evolution: insights from immunological data. Mol Phylogenet Evol 1:193\u2013201","journal-title":"Mol Phylogenet Evol"},{"key":"336_CR18","doi-asserted-by":"crossref","first-page":"754","DOI":"10.1093\/bioinformatics\/17.8.754","volume":"17","author":"JP Huelsenbeck","year":"2001","unstructured":"Huelsenbeck JP, Ronquist F (2001) MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics 17:754\u2013755","journal-title":"Bioinformatics"},{"key":"336_CR19","doi-asserted-by":"crossref","first-page":"1266","DOI":"10.1093\/oxfordjournals.molbev.a025736","volume":"14","author":"A Janke","year":"1997","unstructured":"Janke A, Arnason U (1997) The complete mitochondrial genome of Alligator mississippiensis and the separation between recent archosauria (birds and crocodiles). Mol Biol Evol 14:1266\u20131272","journal-title":"Mol Biol Evol"},{"key":"336_CR20","doi-asserted-by":"crossref","first-page":"243","DOI":"10.1093\/genetics\/137.1.243","volume":"137","author":"A Janke","year":"1994","unstructured":"Janke A, Feldmaier-Fuchs G, Thomas WK, von Haeseler A, P\u00e4\u00e4bo S (1994) The marsupial mitochondrial genome and the evolution of placental mammals. Genetics 137: 243\u2013256","journal-title":"Genetics"},{"key":"336_CR21","doi-asserted-by":"crossref","first-page":"623","DOI":"10.1098\/rspb.2000.1402","volume":"268","author":"A Janke","year":"2001","unstructured":"Janke A, Erpenbeck D, Nielsson M, Arnason U (2001) The mitochondrial genomes of a lizard, Iguana iguana, and the caiman, Caiman crocodylus: implications for amniotes phylogeny. Proc Roy Soc Lond B 268:623\u2013631","journal-title":"Proc Roy Soc Lond B"},{"key":"336_CR22","doi-asserted-by":"crossref","first-page":"816","DOI":"10.1038\/416816a","volume":"416","author":"Q Ji","year":"2002","unstructured":"Ji Q, Luo ZX, Yuan CX, Wible JR, Zhang JP, Georgi JA (2002) The earliest known eutherian mammal. Nature 416:816\u2013822","journal-title":"Nature"},{"key":"336_CR23","doi-asserted-by":"crossref","first-page":"917","DOI":"10.1038\/31927","volume":"392","author":"S Kumar","year":"1998","unstructured":"Kumar S, Hedges SB (1998) A molecular timescale for vertebrate evolution. Nature 392:917\u2013920","journal-title":"Nature"},{"key":"336_CR24","doi-asserted-by":"crossref","first-page":"189","DOI":"10.1016\/j.gene.2004.07.040","volume":"340","author":"AM Nilsson","year":"2004","unstructured":"Nilsson AM, Gullberg A, Spencer P, Arnason U, Janke A (2004) Marsupial relationships and a timeline for marsupial radiation in South Gondwana. Gene 340:189\u2013196","journal-title":"Gene"},{"key":"336_CR25","doi-asserted-by":"crossref","first-page":"325","DOI":"10.2307\/1564042","volume":"23","author":"MA Norell","year":"1989","unstructured":"Norell MA (1989) The higher level relationships of extant crocodylia. J Herpetol 23:325\u2013335","journal-title":"J Herpetol"},{"key":"336_CR26","doi-asserted-by":"crossref","first-page":"393","DOI":"10.1093\/sysbio\/45.4.393","volume":"45","author":"S Poe","year":"1996","unstructured":"Poe S (1996) Data set incongruence and the phylogeny of crocodilians. Syst Biol 45:393\u2013414","journal-title":"Syst Biol"},{"key":"336_CR27","doi-asserted-by":"crossref","first-page":"344","DOI":"10.1006\/mpev.1996.0029","volume":"5","author":"TW Quinn","year":"1996","unstructured":"Quinn TW, Mindell DP (1996) Mitochondrial gene order adjacent to the control region in crocodile, turtle and tuatara. Mol Phylogenet Evol 5:344\u2013351","journal-title":"Mol Phylogenet Evol"},{"key":"336_CR28","doi-asserted-by":"crossref","first-page":"101","DOI":"10.1093\/oxfordjournals.molbev.a003974","volume":"19","author":"MJ Sanderson","year":"2002","unstructured":"Sanderson MJ (2002) Estimating absolute rates of molecular evolution and divergence times: a penalized likelihood approach. Mol Biol Evol 19:101\u2013109","journal-title":"Mol Biol Evol"},{"key":"336_CR29","doi-asserted-by":"crossref","first-page":"1114","DOI":"10.1093\/oxfordjournals.molbev.a026201","volume":"16","author":"H Shimodaira","year":"1999","unstructured":"Shimodaira H, Hasegawa M (1999) Multiple comparisons of log-likelihoods with applications to phylogenetic inference. Mol Biol Evol 16:1114\u20131116","journal-title":"Mol Biol Evol"},{"key":"336_CR30","doi-asserted-by":"crossref","first-page":"964","DOI":"10.1093\/oxfordjournals.molbev.a025664","volume":"13","author":"K Strimmer","year":"1996","unstructured":"Strimmer K, von Haeseler A (1996) Quartet puzzling: a quartet maximum likelihood method for reconstructing tree topologies. Mol Biol Evol 13:964\u2013969","journal-title":"Mol Biol Evol"},{"key":"336_CR31","first-page":"512","volume":"10","author":"K Tamura","year":"1993","unstructured":"Tamura K, Nei M (1993) Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees. Mol Biol Evol 10:512\u2013526","journal-title":"Mol Biol Evol"},{"key":"336_CR32","doi-asserted-by":"crossref","first-page":"843","DOI":"10.1093\/icb\/29.3.843","volume":"29","author":"SF Tarsitano","year":"1989","unstructured":"Tarsitano SF, Frey E, Riess J (1989) The evolution of the Crocodilia: a conflict between morphological and biochemical data. Am Zool 29:843\u2013856","journal-title":"Am Zool"},{"key":"336_CR33","unstructured":"Wu X, Wang Y, Zhou K, Zhu W, Nie J, Wan C, Xie W (2002) The complete mitochondrial genome sequence of Chinese alligator. AF511507 (unpublished)"}],"container-title":["Journal of Molecular Evolution"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/s00239-004-0336-9.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/article\/10.1007\/s00239-004-0336-9\/fulltext.html","content-type":"text\/html","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/s00239-004-0336-9","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2021,7,18]],"date-time":"2021-07-18T10:38:26Z","timestamp":1626604706000},"score":1,"resource":{"primary":{"URL":"http:\/\/link.springer.com\/10.1007\/s00239-004-0336-9"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2005,10,6]]},"references-count":33,"journal-issue":{"issue":"5","published-print":{"date-parts":[[2005,11]]}},"alternative-id":["336"],"URL":"https:\/\/doi.org\/10.1007\/s00239-004-0336-9","relation":{},"ISSN":["0022-2844","1432-1432"],"issn-type":[{"value":"0022-2844","type":"print"},{"value":"1432-1432","type":"electronic"}],"subject":[],"published":{"date-parts":[[2005,10,6]]}}}