{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,10,8]],"date-time":"2026-10-08T01:29:53Z","timestamp":1791422993152,"version":"4.3.3"},"reference-count":27,"publisher":"Springer Science and Business Media LLC","issue":"4","license":[{"start":{"date-parts":[[2011,2,22]],"date-time":"2011-02-22T00:00:00Z","timestamp":1298332800000},"content-version":"tdm","delay-in-days":0,"URL":"http:\/\/www.springer.com\/tdm"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["Microb Ecol"],"published-print":{"date-parts":[[2011,5]]},"DOI":"10.1007\/s00248-011-9819-6","type":"journal-article","created":{"date-parts":[[2011,2,21]],"date-time":"2011-02-21T22:17:25Z","timestamp":1298326645000},"page":"723-728","source":"Crossref","is-referenced-by-count":96,"title":["Transcriptome Analysis of the Rhizosphere Bacterium Azospirillum brasilense Reveals an Extensive Auxin Response"],"prefix":"10.1007","volume":"61","author":[{"given":"Sandra","family":"Van Puyvelde","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Lore","family":"Cloots","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Kristof","family":"Engelen","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Frederik","family":"Das","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Kathleen","family":"Marchal","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Jos","family":"Vanderleyden","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Stijn","family":"Spaepen","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"297","published-online":{"date-parts":[[2011,2,22]]},"reference":[{"key":"9819_CR1","doi-asserted-by":"crossref","first-page":"a004572","DOI":"10.1101\/cshperspect.a004572","volume":"10","author":"S Abel","year":"2010","unstructured":"Abel S, Theologis A (2010) Odyssey of auxin. Cold Spring Harb Perspect Biol 10:a004572","journal-title":"Cold Spring Harb Perspect Biol"},{"key":"9819_CR2","doi-asserted-by":"crossref","first-page":"35","DOI":"10.1007\/BF02277385","volume":"90","author":"VLD Baldani","year":"1986","unstructured":"Baldani VLD, Alvarez MAD, Baldani JI, D\u00f6bereiner J (1986) Establishment of inoculated Azospirillum spp in the rhizosphere and in roots of field-grown wheat and sorghum. Plant Soil 90:35\u201346","journal-title":"Plant Soil"},{"key":"9819_CR3","doi-asserted-by":"crossref","first-page":"121","DOI":"10.1186\/1471-2105-11-121","volume":"11","author":"F Battke","year":"2010","unstructured":"Battke F, Symons S, Nieselt K (2010) Mayday\u2014integrative analytics for expression data. BMC Bioinform 11:121","journal-title":"BMC Bioinform"},{"key":"9819_CR4","doi-asserted-by":"crossref","first-page":"373","DOI":"10.1007\/s00203-006-0103-y","volume":"185","author":"C Bianco","year":"2006","unstructured":"Bianco C, Imperlini E, Calogero R, Senatore B, Amoresano A, Carpentieri A, Pucci P, Defez R (2006) Indole-3-acetic acid improves Escherichia coli's defences to stress. Arch Microbiol 185:373\u2013382","journal-title":"Arch Microbiol"},{"key":"9819_CR5","doi-asserted-by":"crossref","first-page":"2421","DOI":"10.1099\/mic.0.28765-0","volume":"152","author":"C Bianco","year":"2006","unstructured":"Bianco C, Imperlini E, Calogero R, Senatore B, Pucci P, Defez R (2006) Indole-3-acetic acid regulates the central metabolic pathways in Escherichia coli. Microbiology 152:2421\u20132431","journal-title":"Microbiology"},{"key":"9819_CR6","doi-asserted-by":"crossref","first-page":"3","DOI":"10.1016\/j.mib.2008.01.006","volume":"11","author":"LEH Bingle","year":"2008","unstructured":"Bingle LEH, Bailey CM, Pallen MJ (2008) Type VI secretion: a beginner's guide. Curr Opin Microbiol 11:3\u20138","journal-title":"Curr Opin Microbiol"},{"key":"9819_CR7","doi-asserted-by":"crossref","first-page":"53","DOI":"10.1094\/MPMI.2003.16.1.53","volume":"16","author":"MR Bladergroen","year":"2003","unstructured":"Bladergroen MR, Badelt K, Spaink HP (2003) Infection-blocking genes of a symbiotic Rhizobium leguminosarum strain that are involved in temperature-dependent protein secretion. Mol Plant-Microb Interact 16:53\u201364","journal-title":"Mol Plant-Microb Interact"},{"key":"9819_CR8","doi-asserted-by":"crossref","first-page":"735","DOI":"10.1038\/embor.2008.131","volume":"9","author":"E Cascales","year":"2008","unstructured":"Cascales E (2008) The type VI secretion toolkit. EMBO Rep 9:735\u2013741","journal-title":"EMBO Rep"},{"key":"9819_CR9","doi-asserted-by":"crossref","first-page":"463","DOI":"10.1007\/BF00280477","volume":"243","author":"A Costacurta","year":"1994","unstructured":"Costacurta A, Keijers V, Vanderleyden J (1994) Molecular cloning and sequence analysis of an Azospirillum brasilense indole-3-pyruvate decarboxylase gene. Mol Gen Genet 243:463\u2013472","journal-title":"Mol Gen Genet"},{"key":"9819_CR10","doi-asserted-by":"crossref","first-page":"155","DOI":"10.1023\/A:1004658000815","volume":"212","author":"S Dobbelaere","year":"1999","unstructured":"Dobbelaere S, Croonenborghs A, Thys A, Vande Broek A, Vanderleyden J (1999) Phytostimulatory effect of Azospirillum brasilense wild type and mutant strains altered in IAA production on wheat. Plant Soil 212:155\u2013164","journal-title":"Plant Soil"},{"key":"9819_CR11","doi-asserted-by":"crossref","first-page":"75","DOI":"10.1080\/20014091096710","volume":"27","author":"F Dosselaere","year":"2001","unstructured":"Dosselaere F, Vanderleyden J (2001) A metabolic node in action: chorismate-utilizing enzymes in microorganisms. Crit Rev Microbiol 27:75\u2013131","journal-title":"Crit Rev Microbiol"},{"key":"9819_CR12","doi-asserted-by":"crossref","first-page":"471","DOI":"10.1016\/j.tim.2010.06.009","volume":"18","author":"M Fischer","year":"2010","unstructured":"Fischer M, Zhang QY, Hubbard RE, Thomas GH (2010) Caught in a TRAP: substrate-binding proteins in secondary transport. Trends Microbiol 18:471\u2013478","journal-title":"Trends Microbiol"},{"key":"9819_CR13","doi-asserted-by":"crossref","first-page":"6639","DOI":"10.1128\/AEM.01262-08","volume":"74","author":"JCA Janssens","year":"2008","unstructured":"Janssens JCA, Steenackers H, Robijns S, Gellens E, Levin J, Zhao H, Hermans K, De Coster D, Verhoeven TL, Marchal K, Vanderleyden J, De Vos DE, De Keersmaecker SCJ (2008) Brominated furanones inhibit biofilm formation by Salmonella enterica serovar Typhimurium. Appl Environ Microbiol 74:6639\u20136648","journal-title":"Appl Environ Microbiol"},{"key":"9819_CR14","doi-asserted-by":"crossref","first-page":"889","DOI":"10.1046\/j.1365-2958.1999.01396.x","volume":"32","author":"M Lambrecht","year":"1999","unstructured":"Lambrecht M, Vande Broek A, Dosselaere F, Vanderleyden J (1999) The ipdC promoter auxin-responsive element of Azospirillum brasilense, a prokaryotic ancestral form of the plant AuxRE? Mol Microbiol 32:889\u2013891","journal-title":"Mol Microbiol"},{"key":"9819_CR15","doi-asserted-by":"crossref","first-page":"118","DOI":"10.1186\/gb-2007-8-9-r179","volume":"8","author":"MA Matilla","year":"2007","unstructured":"Matilla MA, Espinosa-Urgel M, Rodriguez-Herva JJ, Ramos JL, Ramos-Gonzalez MI (2007) Genomic analysis reveals the major driving forces of bacterial life in the rhizosphere. Genome Biol 8:118","journal-title":"Genome Biol"},{"key":"9819_CR16","doi-asserted-by":"crossref","first-page":"1001","DOI":"10.1094\/MPMI-21-7-1001","volume":"21","author":"C Molina-Favero","year":"2008","unstructured":"Molina-Favero C, Creus CM, Simontacchi M, Puntarulo S, Lamattina L (2008) Aerobic nitric oxide production by Azospirillum brasilense Sp245 and its influence on root architecture in tomato. Mol Plant-Microb Interact 21:1001\u20131009","journal-title":"Mol Plant-Microb Interact"},{"key":"9819_CR17","doi-asserted-by":"crossref","first-page":"609","DOI":"10.1094\/MPMI-6-609","volume":"6","author":"E Prinsen","year":"1993","unstructured":"Prinsen E, Costacurta A, Michiels K, Vanderleyden J, Van Onckelen H (1993) Azospirillum brasilense indole-3-acetic acid biosynthesis: evidence for a non-tryptophan dependent pathway. Mol Plant-Microb Interact 6:609\u2013615","journal-title":"Mol Plant-Microb Interact"},{"key":"9819_CR18","doi-asserted-by":"crossref","first-page":"4153","DOI":"10.1073\/pnas.0400659101","volume":"101","author":"R Prusty","year":"2004","unstructured":"Prusty R, Grisafi P, Fink GR (2004) The plant hormone indoleacetic acid induces invasive growth in Saccharomyces cerevisiae. Proc Natl Acad Sci USA 101:4153\u20134157","journal-title":"Proc Natl Acad Sci USA"},{"key":"9819_CR19","doi-asserted-by":"crossref","first-page":"425","DOI":"10.1111\/j.1574-6976.2007.00072.x","volume":"31","author":"S Spaepen","year":"2007","unstructured":"Spaepen S, Vanderleyden J, Remans R (2007) Indole-3-acetic acid in microbial and microorganism-plant signaling. FEMS Microbiol Rev 31:425\u2013448","journal-title":"FEMS Microbiol Rev"},{"key":"9819_CR20","doi-asserted-by":"crossref","first-page":"344","DOI":"10.1007\/s002030100271","volume":"175","author":"O Steenhoudt","year":"2001","unstructured":"Steenhoudt O, Keijers V, Okon Y, Vanderleyden J (2001) Identification and characterization of a periplasmic nitrate reductase in Azospirillum brasilense Sp245. Arch Microbiol 175:344\u2013352","journal-title":"Arch Microbiol"},{"key":"9819_CR21","doi-asserted-by":"crossref","first-page":"487","DOI":"10.1111\/j.1574-6976.2000.tb00552.x","volume":"24","author":"O Steenhoudt","year":"2000","unstructured":"Steenhoudt O, Vanderleyden J (2000) Azospirillum, a free-living nitrogen-fixing bacterium closely associated with grasses: genetic, biochemical and ecological aspects. FEMS Microbiol Rev 24:487\u2013506","journal-title":"FEMS Microbiol Rev"},{"key":"9819_CR22","volume-title":"Exploratory data analysis","author":"JW Tukey","year":"1977","unstructured":"Tukey JW (1977) Exploratory data analysis. Addison-Wesley, Reading"},{"key":"9819_CR23","doi-asserted-by":"crossref","first-page":"311","DOI":"10.1094\/MPMI-18-0311","volume":"18","author":"A Vande Broek","year":"2005","unstructured":"Vande Broek A, Gysegom P, Ona O, Hendrickx N, Prinsen E, Van Impe J, Vanderleyden J (2005) Transcriptional analysis of the Azospirillum brasilense indole-3-pyruvate decarboxylase gene and identification of a cis-acting sequence involved in auxin responsive expression. Mol Plant-Microb Interact 18:311\u2013323","journal-title":"Mol Plant-Microb Interact"},{"key":"9819_CR24","doi-asserted-by":"crossref","first-page":"1338","DOI":"10.1128\/JB.181.4.1338-1342.1999","volume":"181","author":"A Vande Broek","year":"1999","unstructured":"Vande Broek A, Lambrecht M, Eggermont K, Vanderleyden J (1999) Auxins upregulate expression of the indole-3-pyruvate decarboxylase gene in Azospirillum brasilense. J Bacteriol 181:1338\u20131342","journal-title":"J Bacteriol"},{"key":"9819_CR25","doi-asserted-by":"crossref","first-page":"57","DOI":"10.1016\/j.femsle.2005.05.020","volume":"248","author":"BE Xie","year":"2005","unstructured":"Xie BE, Xu K, Zhao HX, Chen SF (2005) Isolation of transposon mutants from Azospirillum brasilense Yu62 and characterization of genes involved in indole-3-acetic acid biosynthesis. FEMS Microbiol Lett 248:57\u201363","journal-title":"FEMS Microbiol Lett"},{"issue":"4","key":"9819_CR26","doi-asserted-by":"crossref","first-page":"e15","DOI":"10.1093\/nar\/30.4.e15","volume":"30","author":"YH Yang","year":"2002","unstructured":"Yang YH, Dudoit S, Luu P, Lin DM, Peng V, Ngai J, Speed TP (2002) Normalization for cDNA microarray data: a robust composite method addressing single and multiple slide systematic variation. Nucleic Acids Res 30(4):e15","journal-title":"Nucleic Acids Res"},{"key":"9819_CR27","doi-asserted-by":"crossref","first-page":"2339","DOI":"10.1111\/j.1462-5822.2008.01215.x","volume":"10","author":"ZC Yuan","year":"2008","unstructured":"Yuan ZC, Haudecoeur E, Faure D, Kerr KF, Nester EW (2008) Comparative transcriptome analysis of Agrobacterium tumefaciens in response to plant signal salicylic acid, indole-3-acetic acid and \u03b3-amino butyric acid reveals signaling cross-talk and Agrobacterium-plant co-evolution. Cell Microbiol 10:2339\u20132354","journal-title":"Cell Microbiol"}],"container-title":["Microbial Ecology"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/s00248-011-9819-6.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/article\/10.1007\/s00248-011-9819-6\/fulltext.html","content-type":"text\/html","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/s00248-011-9819-6","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2020,6,16]],"date-time":"2020-06-16T20:03:44Z","timestamp":1592337824000},"score":1,"resource":{"primary":{"URL":"http:\/\/link.springer.com\/10.1007\/s00248-011-9819-6"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2011,2,22]]},"references-count":27,"journal-issue":{"issue":"4","published-print":{"date-parts":[[2011,5]]}},"alternative-id":["9819"],"URL":"https:\/\/doi.org\/10.1007\/s00248-011-9819-6","relation":{},"ISSN":["0095-3628","1432-184X"],"issn-type":[{"value":"0095-3628","type":"print"},{"value":"1432-184X","type":"electronic"}],"subject":[],"published":{"date-parts":[[2011,2,22]]}}}