{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,6,1]],"date-time":"2026-06-01T12:02:35Z","timestamp":1780315355842,"version":"3.54.1"},"reference-count":74,"publisher":"Springer Science and Business Media LLC","issue":"4","license":[{"start":{"date-parts":[[2013,1,15]],"date-time":"2013-01-15T00:00:00Z","timestamp":1358208000000},"content-version":"tdm","delay-in-days":0,"URL":"http:\/\/www.springer.com\/tdm"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["Microb Ecol"],"published-print":{"date-parts":[[2013,5]]},"DOI":"10.1007\/s00248-012-0161-4","type":"journal-article","created":{"date-parts":[[2013,1,14]],"date-time":"2013-01-14T02:45:09Z","timestamp":1358131509000},"page":"1076-1086","source":"Crossref","is-referenced-by-count":82,"title":["Metagenomic Analysis of Healthy and White Plague-Affected Mussismilia braziliensis Corals"],"prefix":"10.1007","volume":"65","author":[{"given":"Gizele D.","family":"Garcia","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Gustavo B.","family":"Gregoracci","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Eidy","family":"de O. Santos","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Pedro M.","family":"Meirelles","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Genivaldo G. Z.","family":"Silva","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Rob","family":"Edwards","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Tomoo","family":"Sawabe","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Kazuyoshi","family":"Gotoh","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Shota","family":"Nakamura","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Tetsuya","family":"Iida","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Rodrigo L.","family":"de Moura","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Fabiano L.","family":"Thompson","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"297","published-online":{"date-parts":[[2013,1,15]]},"reference":[{"key":"161_CR1","doi-asserted-by":"crossref","first-page":"658","DOI":"10.1007\/s10126-011-9382-7","volume":"13","author":"R Osinga","year":"2011","unstructured":"Osinga R, Schutter M, Griffioen B, Wijffels RH, Verreth JA, Shafir S, Henard S, Taruffi M, Gili C, Lavorano S (2011) The biology and economics of coral growth. Mar Biotechnol (NY) 13:658\u2013671","journal-title":"Mar Biotechnol (NY)"},{"key":"161_CR2","doi-asserted-by":"crossref","first-page":"418","DOI":"10.1126\/science.1204794","volume":"333","author":"JM Pandolfi","year":"2011","unstructured":"Pandolfi JM, Connolly SR, Marshall DJ, Cohen AL (2011) Projecting coral reef futures under global warming and ocean acidification. Science 333:418\u2013422","journal-title":"Science"},{"key":"161_CR3","doi-asserted-by":"crossref","first-page":"189","DOI":"10.1093\/jhered\/esp097","volume":"101","author":"AL Cypriano-Souza","year":"2010","unstructured":"Cypriano-Souza AL, Fernandez GP, Lima-Rosa CAV, Engel MH, Bonatto SL (2010) Microsatellite genetic characterization of the humpback whale (Megaptera novaeangliae) breeding ground off Brazil (breeding stock A). J Hered 101:189\u2013200","journal-title":"J Hered"},{"key":"161_CR4","doi-asserted-by":"crossref","first-page":"411","DOI":"10.1590\/S1679-62252011005000022","volume":"9","author":"MO Freitas","year":"2011","unstructured":"Freitas MO, Abilhoa V, Silva GHDE (2011) Feeding ecology of Lutjanus analis (Teleostei: Lutjanidae) from Abrolhos Bank, Eastern Brazil. Neotrop Ichthyol 9:411\u2013418","journal-title":"Neotrop Ichthyol"},{"key":"161_CR5","doi-asserted-by":"crossref","first-page":"116","DOI":"10.1126\/science.1165283","volume":"323","author":"G De\u2019ath","year":"2009","unstructured":"De\u2019ath G, Lough JM, Fabricius KE (2009) Declining coral calcification on the Great Barrier Reef. Science 323:116\u2013119","journal-title":"Science"},{"key":"161_CR6","doi-asserted-by":"crossref","unstructured":"D\u00e9ath G, Fabricius KE, Sweatman H, Puotinen M (2012) The 27-year decline of coral cover on the Great Barrier Reef and its causes. Proc Natl Acad Sci U S A 109(44):17995\u201317999","DOI":"10.1073\/pnas.1208909109"},{"key":"161_CR7","doi-asserted-by":"crossref","first-page":"958","DOI":"10.1126\/science.1086050","volume":"301","author":"TA Gardner","year":"2003","unstructured":"Gardner TA, Cote IM, Gill JA, Grant A, Watkinson AR (2003) Long-term region-wide declines in Caribbean corals. Science 301:958\u2013960","journal-title":"Science"},{"key":"161_CR8","doi-asserted-by":"crossref","first-page":"273","DOI":"10.3354\/meps266273","volume":"266","author":"KP Sutherland","year":"2004","unstructured":"Sutherland KP, Porter JW, Torres C (2004) Disease and immunity in Caribbean and Indo-Pacific zooxanthellate corals. Mar Ecol Prog Ser 266:273\u2013302","journal-title":"Mar Ecol Prog Ser"},{"key":"161_CR9","doi-asserted-by":"crossref","first-page":"477","DOI":"10.1038\/nature05328","volume":"444","author":"JS Madin","year":"2006","unstructured":"Madin JS, Connolly SR (2006) Ecological consequences of major hydrodynamic disturbances on coral reefs. Nature 444:477\u2013480","journal-title":"Nature"},{"key":"161_CR10","doi-asserted-by":"crossref","first-page":"e1584","DOI":"10.1371\/journal.pone.0001584","volume":"3","author":"EA Dinsdale","year":"2008","unstructured":"Dinsdale EA, Pantos O, Smriga S, Edwards RA, Angly F, Wegley L, Hatay M, Hall D, Brown E, Haynes M, Krause L, Sala E, Sandin SA, Thurber RV, Willis BL, Azam F, Knowlton N, Rohwer F (2008) Microbial ecology of four coral atolls in the Northern Line Islands. PLoS One 3:e1584","journal-title":"PLoS One"},{"key":"161_CR11","doi-asserted-by":"crossref","first-page":"e43233","DOI":"10.1371\/journal.pone.0043233","volume":"7","author":"T McDole","year":"2012","unstructured":"McDole T, Nulton J, Barott KL, Felts B, Hand C, Hatay M, Lee H, Nadon MO, Nosrat B, Salamon P, Bailey B, Sandin SA, Vargas-Angel B, Youle M, Zgliczynski BJ, Brainard RE, Rohwer F (2012) Assessing coral reefs on a pacific-wide scale using the microbialization score. PLoS One 7:e43233","journal-title":"PLoS One"},{"key":"161_CR12","doi-asserted-by":"crossref","first-page":"599","DOI":"10.1016\/j.marpolbul.2005.04.024","volume":"51","author":"ZM Leao","year":"2005","unstructured":"Leao ZM, Kikuchi RK (2005) A relic coral fauna threatened by global changes and human activities, Eastern Brazil. Mar Pollut Bull 51:599\u2013611","journal-title":"Mar Pollut Bull"},{"key":"161_CR13","doi-asserted-by":"crossref","first-page":"1488","DOI":"10.1111\/j.1462-2920.2005.00847.x","volume":"7","author":"B Austin","year":"2005","unstructured":"Austin B, Austin D, Sutherland R, Thompson F, Swings J (2005) Pathogenicity of vibrios to rainbow trout (Oncorhynchus mykiss, Walbaum) and Artemia nauplii. Environ Microbiol 7:1488\u20131495","journal-title":"Environ Microbiol"},{"key":"161_CR14","doi-asserted-by":"crossref","first-page":"e2393","DOI":"10.1371\/journal.pone.0002393","volume":"3","author":"M Sussman","year":"2008","unstructured":"Sussman M, Willis BL, Victor S, Bourne DG (2008) Coral pathogens identified for white syndrome (WS) epizootics in the Indo-Pacific. PLoS One 3:e2393","journal-title":"PLoS One"},{"key":"161_CR15","doi-asserted-by":"crossref","first-page":"e4511","DOI":"10.1371\/journal.pone.0004511","volume":"4","author":"M Sussman","year":"2009","unstructured":"Sussman M, Mieog JC, Doyle J, Victor S, Willis BL, Bourne DG (2009) Vibrio zinc-metalloprotease causes photoinactivation of coral endosymbionts and coral tissue lesions. PLoS One 4:e4511","journal-title":"PLoS One"},{"key":"161_CR16","doi-asserted-by":"crossref","first-page":"1471","DOI":"10.1038\/ismej.2011.19","volume":"5","author":"EO Santos","year":"2011","unstructured":"Santos EO, Alves N Jr, Dias GM, Mazotto AM, Vermelho A, Vora GJ, Wilson B, Beltran VH, Bourne DG, Le Roux F, Thompson FL (2011) Genomic and proteomic analyses of the coral pathogen Vibrio coralliilyticus reveal a diverse virulence repertoire. ISME J 5:1471\u20131483","journal-title":"ISME J"},{"key":"161_CR17","doi-asserted-by":"crossref","first-page":"e36687","DOI":"10.1371\/journal.pone.0036687","volume":"7","author":"T Bruce","year":"2012","unstructured":"Bruce T, Meirelles PM, Garcia G, Paranhos R, Rezende CE, de Moura RL, Filho RF, Coni EO, Vasconcelos AT, Amado Filho G, Hatay M, Schmieder R, Edwards R, Dinsdale E, Thompson FL (2012) Abrolhos Bank reef health evaluated by means of water quality, microbial diversity, benthic cover, and fish biomass data. PLoS One 7:e36687","journal-title":"PLoS One"},{"key":"161_CR18","doi-asserted-by":"crossref","first-page":"2979","DOI":"10.1111\/j.1462-2920.2008.01718.x","volume":"10","author":"N Siboni","year":"2008","unstructured":"Siboni N, Ben-Dov E, Sivan A, Kushmaro A (2008) Global distribution and diversity of coral-associated Archaea and their possible role in the coral holobiont nitrogen cycle. Environ Microbiol 10:2979\u20132990","journal-title":"Environ Microbiol"},{"key":"161_CR19","doi-asserted-by":"crossref","first-page":"523","DOI":"10.1007\/s00248-009-9612-y","volume":"59","author":"MM Lins-de-Barros","year":"2010","unstructured":"Lins-de-Barros MM, Vieira RP, Cardoso AM, Monteiro VA, Turque AS, Silveira CB, Albano RM, Clementino MM, Martins OB (2010) Archaea, Bacteria, and algal plastids associated with the reef-building corals Siderastrea stellata and Mussismilia hispida from Buzios, South Atlantic Ocean, Brazil. Microb Ecol 59:523\u2013532","journal-title":"Microb Ecol"},{"key":"161_CR20","doi-asserted-by":"crossref","first-page":"254","DOI":"10.2307\/1542528","volume":"198","author":"CJ Bentis","year":"2000","unstructured":"Bentis CJ, Kaufman L, Golubic S (2000) Endolithic fungi in reef-building corals (Order: Scleractinia) are common, cosmopolitan, and potentially pathogenic. Biol Bull 198:254\u2013260","journal-title":"Biol Bull"},{"key":"161_CR21","doi-asserted-by":"crossref","first-page":"1291","DOI":"10.1038\/ismej.2011.193","volume":"6","author":"AS Amend","year":"2012","unstructured":"Amend AS, Barshis DJ, Oliver TA (2012) Coral-associated marine fungi form novel lineages and heterogeneous assemblages. ISME J 6:1291\u20131301","journal-title":"ISME J"},{"key":"161_CR22","doi-asserted-by":"crossref","first-page":"658","DOI":"10.1007\/s00248-010-9646-1","volume":"59","author":"AP Castro de","year":"2010","unstructured":"de Castro AP, Araujo SD Jr, Reis AM, Moura RL, Francini-Filho RB, Pappas G Jr, Rodrigues TB, Thompson FL, Kruger RH (2010) Bacterial community associated with healthy and diseased reef coral Mussismilia hispida from eastern Brazil. Microb Ecol 59:658\u2013667","journal-title":"Microb Ecol"},{"key":"161_CR23","doi-asserted-by":"crossref","first-page":"502","DOI":"10.1038\/ismej.2011.123","volume":"6","author":"A Cardenas","year":"2012","unstructured":"Cardenas A, Rodriguez LM, Pizarro V, Cadavid LF, Arevalo-Ferro C (2012) Shifts in bacterial communities of two caribbean reef-building coral species affected by white plague disease. ISME J 6:502\u2013512","journal-title":"ISME J"},{"key":"161_CR24","doi-asserted-by":"crossref","first-page":"509","DOI":"10.1111\/j.1574-6941.2012.01319.x","volume":"80","author":"B Wilson","year":"2012","unstructured":"Wilson B, Aeby GS, Work TM, Bourne DG (2012) Bacterial communities associated with healthy and Acropora white syndrome-affected corals from American Samoa. FEMS Microbiol Ecol 80:509\u2013520","journal-title":"FEMS Microbiol Ecol"},{"key":"161_CR25","unstructured":"Cr\u00f3quer AB, C; Elliott, A; Sweet, M (2012) Bacterial assemblages shifts from healthy to yellow band disease states in the dominant reef coral Montastria faveolata. Environmental Microbiology Reports: 1\u201310"},{"key":"161_CR26","doi-asserted-by":"crossref","first-page":"651","DOI":"10.1111\/j.1758-2229.2010.00234.x","volume":"3","author":"R Littman","year":"2011","unstructured":"Littman R, Willis BL, Bourne DG (2011) Metagenomic analysis of the coral holobiont during a natural bleaching event on the Great Barrier Reef. Environ Microbiol Report 3:651\u2013660","journal-title":"Environ Microbiol Report"},{"key":"161_CR27","doi-asserted-by":"crossref","first-page":"2707","DOI":"10.1111\/j.1462-2920.2007.01383.x","volume":"9","author":"L Wegley","year":"2007","unstructured":"Wegley L, Edwards R, Rodriguez-Brito B, Liu H, Rohwer F (2007) Metagenomic analysis of the microbial community associated with the coral Porites astreoides. Environ Microbiol 9:2707\u20132719","journal-title":"Environ Microbiol"},{"key":"161_CR28","volume-title":"Molecular cloning: a laboratory manual","author":"J Sambrook","year":"2001","unstructured":"Sambrook J, Russel DW (2001) Molecular cloning: a laboratory manual, 3rd edn. Cold Spring Harbor Laboratory Press, New York","edition":"3"},{"key":"161_CR29","doi-asserted-by":"crossref","first-page":"1378","DOI":"10.1111\/j.1365-2672.2008.04106.x","volume":"106","author":"AM Reis","year":"2009","unstructured":"Reis AM, Araujo SD Jr, Moura RL, Francini-Filho RB, Pappas G Jr, Coelho AM, Kruger RH, Thompson FL (2009) Bacterial diversity associated with the Brazilian endemic reef coral Mussismilia braziliensis. J Appl Microbiol 106:1378\u20131387","journal-title":"J Appl Microbiol"},{"key":"161_CR30","doi-asserted-by":"crossref","first-page":"376","DOI":"10.1038\/nature03959","volume":"437","author":"M Margulies","year":"2005","unstructured":"Margulies M, Egholm M, Altman WE, Attiya S, Bader JS, Bemben LA, Berka J, Braverman MS, Chen YJ, Chen Z, Dewell SB, Du L, Fierro JM, Gomes XV, Godwin BC, He W, Helgesen S, Ho CH, Irzyk GP, Jando SC, Alenquer ML, Jarvie TP, Jirage KB, Kim JB, Knight JR, Lanza JR, Leamon JH, Lefkowitz SM, Lei M, Li J, Lohman KL, Lu H, Makhijani VB, McDade KE, McKenna MP, Myers EW, Nickerson E, Nobile JR, Plant R, Puc BP, Ronan MT, Roth GT, Sarkis GJ, Simons JF, Simpson JW, Srinivasan M, Tartaro KR, Tomasz A, Vogt KA, Volkmer GA, Wang SH, Wang Y, Weiner MP, Yu P, Begley RF, Rothberg JM (2005) Genome sequencing in microfabricated high-density picolitre reactors. Nature 437:376\u2013380","journal-title":"Nature"},{"key":"161_CR31","doi-asserted-by":"crossref","first-page":"1752","DOI":"10.1111\/j.1462-2920.2009.01901.x","volume":"11","author":"D Willner","year":"2009","unstructured":"Willner D, Thurber RV, Rohwer F (2009) Metagenomic signatures of 86 microbial and viral metagenomes. Environ Microbiol 11:1752\u20131766","journal-title":"Environ Microbiol"},{"key":"161_CR32","doi-asserted-by":"crossref","first-page":"1552","DOI":"10.1101\/gr.120618.111","volume":"21","author":"DH Huson","year":"2011","unstructured":"Huson DH, Mitra S, Ruscheweyh HJ, Weber N, Schuster SC (2011) Integrative analysis of environmental sequences using MEGAN4. Genome Res 21:1552\u20131560","journal-title":"Genome Res"},{"key":"161_CR33","doi-asserted-by":"crossref","first-page":"386","DOI":"10.1186\/1471-2105-9-386","volume":"9","author":"F Meyer","year":"2008","unstructured":"Meyer F, Paarmann D, D\u2019Souza M, Olson R, Glass EM, Kubal M, Paczian T, Rodriguez A, Stevens R, Wilke A, Wilkening J, Edwards RA (2008) The metagenomics RAST server\u2014a public resource for the automatic phylogenetic and functional analysis of metagenomes. BMC Bioinforma 9:386","journal-title":"BMC Bioinforma"},{"key":"161_CR34","doi-asserted-by":"crossref","first-page":"2737","DOI":"10.1093\/bioinformatics\/btp508","volume":"25","author":"E Kristiansson","year":"2009","unstructured":"Kristiansson E, Hugenholtz P, Dalevi D (2009) ShotgunFunctionalizeR: an R-package for functional comparison of metagenomes. Bioinformatics 25:2737\u20132738","journal-title":"Bioinformatics"},{"key":"161_CR35","doi-asserted-by":"crossref","first-page":"715","DOI":"10.1093\/bioinformatics\/btq041","volume":"26","author":"DH Parks","year":"2010","unstructured":"Parks DH, Beiko RG (2010) Identifying biologically relevant differences between metagenomic communities. Bioinformatics 26:715\u2013721","journal-title":"Bioinformatics"},{"key":"161_CR36","doi-asserted-by":"crossref","first-page":"6438","DOI":"10.1128\/AEM.01162-12","volume":"78","author":"KM Morrow","year":"2012","unstructured":"Morrow KM, Moss AG, Chadwick NE, Liles MR (2012) Bacterial associates of two Caribbean coral species reveal species-specific distribution and geographic variability. Appl Environ Microbiol 78:6438\u20136449","journal-title":"Appl Environ Microbiol"},{"key":"161_CR37","doi-asserted-by":"crossref","first-page":"152","DOI":"10.1111\/j.1574-6941.2009.00666.x","volume":"68","author":"RAWB Littman","year":"2009","unstructured":"Littman RAWB, Pfeffer C, Bourne DG (2009) Diversities of coral-associated bacteria differ with location, but not species, for three acroporid corals on the Great Barrier Reef. FEMS Microbiol Ecol 68:152\u2013163","journal-title":"FEMS Microbiol Ecol"},{"key":"161_CR38","doi-asserted-by":"crossref","first-page":"1806","DOI":"10.1111\/j.1462-2920.2010.02201.x","volume":"12","author":"JI Prosser","year":"2010","unstructured":"Prosser JI (2010) Replicate or lie. Environ Microbiol 12:1806\u20131810","journal-title":"Environ Microbiol"},{"key":"161_CR39","doi-asserted-by":"crossref","first-page":"e10401","DOI":"10.1371\/journal.pone.0010401","volume":"5","author":"EC Kvennefors","year":"2010","unstructured":"Kvennefors EC, Sampayo E, Ridgway T, Barnes AC, Hoegh-Guldberg O (2010) Bacterial communities of two ubiquitous Great Barrier Reef corals reveals both site- and species-specificity of common bacterial associates. PLoS One 5:e10401","journal-title":"PLoS One"},{"key":"161_CR40","doi-asserted-by":"crossref","first-page":"320","DOI":"10.1038\/nature10249","volume":"476","author":"C Shinzato","year":"2011","unstructured":"Shinzato C, Shoguchi E, Kawashima T, Hamada M, Hisata K, Tanaka M, Fujie M, Fujiwara M, Koyanagi R, Ikuta T, Fujiyama A, Miller DJ, Satoh N (2011) Using the Acropora digitifera genome to understand coral responses to environmental change. Nature 476:320\u2013U382","journal-title":"Nature"},{"key":"161_CR41","first-page":"746","volume":"42","author":"TC LaJeunesse","year":"2005","unstructured":"LaJeunesse TC, Lambert G, Andersen RA, Coffroth MA, Galbraith DW (2005) Symbiodinium (Pyrrophyta) genome sizes (DNA content) are the smallest among dinoflagellates. J Phycol 42:746\u2013748","journal-title":"J Phycol"},{"key":"161_CR42","doi-asserted-by":"crossref","first-page":"9","DOI":"10.1016\/B978-044451388-5\/50003-5","volume-title":"Corals and coral reefs of Brazil. Latin America coral reefs","author":"ZMAN Le\u00e3o","year":"2003","unstructured":"Le\u00e3o ZMAN, Kikuchi RKP, Testa V (2003) Corals and coral reefs of Brazil. Latin America coral reefs. Elsevier, Amsterdam, pp 9\u201352"},{"key":"161_CR43","doi-asserted-by":"crossref","first-page":"143","DOI":"10.1007\/s00338-002-0220-2","volume":"21","author":"WW Toller","year":"2002","unstructured":"Toller WW, Rowan R, Knowlton N (2002) Genetic evidence for a protozoan (phylum Apicomplexa) associated with corals of the Montastraea annularis species complex. Coral Reefs 21:143\u2013146","journal-title":"Coral Reefs"},{"key":"161_CR44","doi-asserted-by":"crossref","first-page":"R518","DOI":"10.1016\/j.cub.2012.04.047","volume":"22","author":"J Janou\u0161kovec","year":"2012","unstructured":"Janou\u0161kovec J, Hor\u00e1k A, Barott KL, Rohwer FL, Keeling PJ (2012) Global analysis of plastid diversity reveals apicomplexan-related lineages in coral reefs. Curr Biol 22:R518\u2013R519","journal-title":"Curr Biol"},{"key":"161_CR45","doi-asserted-by":"crossref","first-page":"615","DOI":"10.1002\/bies.200900182","volume":"32","author":"S Wooldridge","year":"2010","unstructured":"Wooldridge S (2010) Is the coral-algae symbiosis really \u2018mutually beneficial\u2019 for the partners? Bioessays 32:615\u2013625","journal-title":"Bioessays"},{"key":"161_CR46","doi-asserted-by":"crossref","first-page":"80","DOI":"10.2307\/1543582","volume":"207","author":"K Koike","year":"2004","unstructured":"Koike K, Jimbo M, Sakai R, Kaeriyama M, Muramoto K, Ogata T, Maruyama T, Kamiya H (2004) Octocoral chemical signaling selects and controls dinoflagellate symbionts. Biol Bull 207:80\u201386","journal-title":"Biol Bull"},{"key":"161_CR47","doi-asserted-by":"crossref","first-page":"1008","DOI":"10.1016\/j.marpolbul.2008.02.013","volume":"56","author":"RB Francini-Filho","year":"2008","unstructured":"Francini-Filho RB, Moura RL, Thompson FL, Reis RM, Kaufman L, Kikuchi RK, Le\u00e3o ZM (2008) Diseases leading to accelerated decline of reef corals in the largest South Atlantic reef complex (Abrolhos Bank, eastern Brazil). Mar Pollut Bull 56:1008\u20131014","journal-title":"Mar Pollut Bull"},{"key":"161_CR48","doi-asserted-by":"crossref","first-page":"370","DOI":"10.1046\/j.1462-2920.2003.00427.x","volume":"5","author":"O Pantos","year":"2003","unstructured":"Pantos O, Cooney RP, Le Tissier MDA, Barer MR, O\u2019Donnell AG, Bythell JC (2003) The bacterial ecology of a plague-like disease affecting the Caribbean coral Montastrea annularis. Environ Microbiol 5:370\u2013382","journal-title":"Environ Microbiol"},{"key":"161_CR49","doi-asserted-by":"crossref","first-page":"512","DOI":"10.1038\/ismej.2008.131","volume":"3","author":"S Sunagawa","year":"2009","unstructured":"Sunagawa S, DeSantis TZ, Piceno YM, Brodie EL, DeSalvo MK, Voolstra CR, Weil E, Andersen GL, Medina M (2009) Bacterial diversity and white plague disease-associated community changes in the Caribbean coral Montastraea faveolata. ISME J 3:512\u2013521","journal-title":"ISME J"},{"key":"161_CR50","doi-asserted-by":"crossref","first-page":"1137","DOI":"10.1111\/j.1462-2920.2004.00647.x","volume":"6","author":"V Casas","year":"2004","unstructured":"Casas V, Kline DI, Wegley L, Yu YN, Breitbart M, Rohwer F (2004) Widespread association of a Rickettsiales-like bacterium with reef-building corals. Environ Microbiol 6:1137\u20131148","journal-title":"Environ Microbiol"},{"key":"161_CR51","doi-asserted-by":"crossref","unstructured":"Kline DI, Vollmer SV (2011) White Band Disease (type I) of endangered caribbean acroporid corals is caused by pathogenic bacteria. Sci Rep-UK 1","DOI":"10.1038\/srep00007"},{"key":"161_CR52","doi-asserted-by":"crossref","first-page":"593","DOI":"10.1128\/CMR.00008-07","volume":"20","author":"HM Wexler","year":"2007","unstructured":"Wexler HM (2007) Bacteroides: the good, the bad, and the nitty-gritty. Clin Microbiol Rev 20:593\u2013621","journal-title":"Clin Microbiol Rev"},{"key":"161_CR53","doi-asserted-by":"crossref","first-page":"606","DOI":"10.1002\/9780470281840","volume-title":"Microbial ecology of the oceans","author":"DL Kirchman","year":"2008","unstructured":"Kirchman DL (2008) In: Kirchman DL (ed) Microbial ecology of the oceans. Wiley, New Jersey, p 606"},{"key":"161_CR54","doi-asserted-by":"crossref","first-page":"210","DOI":"10.1007\/s00248-011-9904-x","volume":"63","author":"A Lo Giudice","year":"2012","unstructured":"Lo Giudice A, Caruso C, Mangano S, Bruni V, De Domenico M, Michaud L (2012) Marine bacterioplankton diversity and community composition in an antarctic coastal environment. Microb Ecol 63:210\u2013223","journal-title":"Microb Ecol"},{"key":"161_CR55","doi-asserted-by":"crossref","first-page":"5955","DOI":"10.1128\/AEM.70.10.5955-5962.2004","volume":"70","author":"J Frias-Lopez","year":"2004","unstructured":"Frias-Lopez J, Klaus JS, Bonheyo GT, Fouke BW (2004) Bacterial community associated with black band disease in corals. Appl Environ Microbiol 70:5955\u20135962","journal-title":"Appl Environ Microbiol"},{"key":"161_CR56","doi-asserted-by":"crossref","first-page":"231","DOI":"10.1111\/j.1574-6941.2010.00991.x","volume":"75","author":"AW Miller","year":"2011","unstructured":"Miller AW, Richardson LL (2011) A meta-analysis of 16S rRNA gene clone libraries from the polymicrobial black band disease of corals. FEMS Microbiol Ecol 75:231\u2013241","journal-title":"FEMS Microbiol Ecol"},{"key":"161_CR57","doi-asserted-by":"crossref","first-page":"e31408","DOI":"10.1371\/journal.pone.0031408","volume":"7","author":"GB Gregoracci","year":"2012","unstructured":"Gregoracci GB, Nascimento JR, Cabral AS, Paranhos R, Valentin JL, Thompson CC, Thompson FL (2012) Structuring of bacterioplankton diversity in a large tropical bay. PLoS One 7:e31408","journal-title":"PLoS One"},{"key":"161_CR58","doi-asserted-by":"crossref","first-page":"e44243","DOI":"10.1371\/journal.pone.0044243","volume":"7","author":"S Godwin","year":"2012","unstructured":"Godwin S, Bent E, Borneman J, Pereg L (2012) The role of coral-associated bacterial communities in Australian subtropical white syndrome of Turbinaria mesenterina. PLoS One 7:e44243","journal-title":"PLoS One"},{"key":"161_CR59","doi-asserted-by":"crossref","first-page":"396","DOI":"10.1038\/380396a0","volume":"380","author":"A Kushmaro","year":"1996","unstructured":"Kushmaro A, Loya Y, Fine M, Rosenberg E (1996) Bacterial infection and coral bleaching. Nature 380:396","journal-title":"Nature"},{"key":"161_CR60","doi-asserted-by":"crossref","first-page":"4236","DOI":"10.1128\/AEM.69.7.4236-4242.2003","volume":"69","author":"Y Ben-Haim","year":"2003","unstructured":"Ben-Haim Y, Zicherman-Keren M, Rosenberg E (2003) Temperature-regulated bleaching and lysis of the coral Pocillopora damicornis by the novel pathogen Vibrio coralliilyticus. Appl Environ Microbiol 69:4236\u20134242","journal-title":"Appl Environ Microbiol"},{"key":"161_CR61","doi-asserted-by":"crossref","first-page":"717","DOI":"10.1038\/nrmicro2873","volume":"10","author":"G Hajishengallis","year":"2012","unstructured":"Hajishengallis G, Darveau RP, Curtis MA (2012) The keystone-pathogen hypothesis. Nat Rev Microbiol 10:717\u2013725","journal-title":"Nat Rev Microbiol"},{"key":"161_CR62","doi-asserted-by":"crossref","first-page":"102","DOI":"10.1016\/j.jembe.2011.07.030","volume":"408","author":"RL Vega Thurber","year":"2011","unstructured":"Vega Thurber RL, Correa AMS (2011) Viruses of reef-building scleractinian corals. J Exp Mar Biol Ecol 408:102\u2013113","journal-title":"J Exp Mar Biol Ecol"},{"key":"161_CR63","doi-asserted-by":"crossref","first-page":"268","DOI":"10.1128\/MMBR.00041-10","volume":"75","author":"YG Kuznetsov","year":"2011","unstructured":"Kuznetsov YG, McPherson A (2011) Atomic force microscopy in imaging of viruses and virus-infected cells. Microbiol Mol Biol Rev 75:268\u2013285","journal-title":"Microbiol Mol Biol Rev"},{"key":"161_CR64","doi-asserted-by":"crossref","first-page":"221","DOI":"10.1016\/j.virusres.2007.12.010","volume":"134","author":"TH Eickbush","year":"2008","unstructured":"Eickbush TH, Jamburuthugoda VK (2008) The diversity of retrotransposons and the properties of their reverse transcriptases. Virus Res 134:221\u2013234","journal-title":"Virus Res"},{"key":"161_CR65","doi-asserted-by":"crossref","first-page":"913","DOI":"10.1002\/bies.20452","volume":"28","author":"JN Volff","year":"2006","unstructured":"Volff JN (2006) Turning junk into gold: domestication of transposable elements and the creation of new genes in eukaryotes. Bioessays 28:913\u2013922","journal-title":"Bioessays"},{"key":"161_CR66","doi-asserted-by":"crossref","first-page":"1127","DOI":"10.1038\/nature08248","volume":"460","author":"NG Coufal","year":"2009","unstructured":"Coufal NG, Garcia-Perez JL, Peng GE, Yeo GW, Mu Y, Lovci MT, Morell M, O\u2019Shea KS, Moran JV, Gage FH (2009) L1 retrotransposition in human neural progenitor cells. Nature 460:1127\u20131131","journal-title":"Nature"},{"key":"161_CR67","doi-asserted-by":"crossref","first-page":"1512","DOI":"10.1126\/science.1174149","volume":"325","author":"A Katzourakis","year":"2009","unstructured":"Katzourakis A, Gifford RJ, Tristem M, Gilbert MT, Pybus OG (2009) Macroevolution of complex retroviruses. Science 325:1512","journal-title":"Science"},{"key":"161_CR68","doi-asserted-by":"crossref","first-page":"241","DOI":"10.1016\/S0378-1119(98)00296-0","volume":"215","author":"R Poulter","year":"1998","unstructured":"Poulter R, Butler M (1998) A retrotransposon family from the pufferfish (fugu) Fugu rubripes. Gene 215:241\u2013249","journal-title":"Gene"},{"key":"161_CR69","doi-asserted-by":"crossref","first-page":"1285","DOI":"10.1073\/pnas.91.4.1285","volume":"91","author":"A Kim","year":"1994","unstructured":"Kim A, Terzian C, Santamaria P, Pelisson A, Purd\u2019homme N, Bucheton A (1994) Retroviruses in invertebrates: the gypsy retrotransposon is apparently an infectious retrovirus of Drosophila melanogaster. Proc Natl Acad Sci U S A 91:1285\u20131289","journal-title":"Proc Natl Acad Sci U S A"},{"key":"161_CR70","doi-asserted-by":"crossref","first-page":"8401","DOI":"10.1073\/pnas.88.19.8401","volume":"88","author":"MS Springer","year":"1991","unstructured":"Springer MS, Davidson EH, Britten RJ (1991) Retroviral-like element in a marine invertebrate. Proc Natl Acad Sci U S A 88:8401\u20138404","journal-title":"Proc Natl Acad Sci U S A"},{"key":"161_CR71","doi-asserted-by":"crossref","first-page":"136","DOI":"10.1016\/j.gene.2006.09.025","volume":"390","author":"EA Gladyshev","year":"2007","unstructured":"Gladyshev EA, Meselson M, Arkhipova IR (2007) A deep-branching clade of retrovirus-like retrotransposons in bdelloid rotifers. Gene 390:136\u2013145","journal-title":"Gene"},{"key":"161_CR72","doi-asserted-by":"crossref","first-page":"329","DOI":"10.1038\/nrg793","volume":"3","author":"C Feschotte","year":"2002","unstructured":"Feschotte C, Jiang N, Wessler SR (2002) Plant transposable elements: where genetics meets genomics. Nat Rev Genet 3:329\u2013341","journal-title":"Nat Rev Genet"},{"key":"161_CR73","doi-asserted-by":"crossref","first-page":"563","DOI":"10.1038\/ng.368","volume":"41","author":"GJ Faulkner","year":"2009","unstructured":"Faulkner GJ, Kimura Y, Daub CO, Wani S, Plessy C, Irvine KM, Schroder K, Cloonan N, Steptoe AL, Lassmann T, Waki K, Hornig N, Arakawa T, Takahashi H, Kawai J, Forrest AR, Suzuki H, Hayashizaki Y, Hume DA, Orlando V, Grimmond SM, Carninci P (2009) The regulated retrotransposon transcriptome of mammalian cells. Nat Genet 41:563\u2013571","journal-title":"Nat Genet"},{"key":"161_CR74","doi-asserted-by":"crossref","first-page":"57","DOI":"10.1038\/nature11244","volume":"487","author":"TS Macfarlan","year":"2012","unstructured":"Macfarlan TS, Gifford WD, Driscoll S, Lettieri K, Rowe HM, Bonanomi D, Firth A, Singer O, Trono D, Pfaff SL (2012) Embryonic stem cell potency fluctuates with endogenous retrovirus activity. Nature 487:57\u201363","journal-title":"Nature"}],"container-title":["Microbial Ecology"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/s00248-012-0161-4.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/article\/10.1007\/s00248-012-0161-4\/fulltext.html","content-type":"text\/html","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/s00248-012-0161-4","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2020,7,20]],"date-time":"2020-07-20T08:40:55Z","timestamp":1595234455000},"score":1,"resource":{"primary":{"URL":"http:\/\/link.springer.com\/10.1007\/s00248-012-0161-4"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2013,1,15]]},"references-count":74,"journal-issue":{"issue":"4","published-print":{"date-parts":[[2013,5]]}},"alternative-id":["161"],"URL":"https:\/\/doi.org\/10.1007\/s00248-012-0161-4","relation":{},"ISSN":["0095-3628","1432-184X"],"issn-type":[{"value":"0095-3628","type":"print"},{"value":"1432-184X","type":"electronic"}],"subject":[],"published":{"date-parts":[[2013,1,15]]}}}