{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,7,3]],"date-time":"2026-07-03T05:06:23Z","timestamp":1783055183023,"version":"3.54.6"},"reference-count":112,"publisher":"Springer Science and Business Media LLC","issue":"2","license":[{"start":{"date-parts":[[2021,9,9]],"date-time":"2021-09-09T00:00:00Z","timestamp":1631145600000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.springer.com\/tdm"},{"start":{"date-parts":[[2021,9,9]],"date-time":"2021-09-09T00:00:00Z","timestamp":1631145600000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/www.springer.com\/tdm"}],"funder":[{"DOI":"10.13039\/501100004809","name":"Financiadora de Estudos e Projetos","doi-asserted-by":"publisher","award":["01.13.0209.00"],"award-info":[{"award-number":["01.13.0209.00"]}],"id":[{"id":"10.13039\/501100004809","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100001807","name":"Funda\u00e7\u00e3o de Amparo \u00e0 Pesquisa do Estado de S\u00e3o Paulo","doi-asserted-by":"publisher","award":["2016\/18944-3"],"award-info":[{"award-number":["2016\/18944-3"]}],"id":[{"id":"10.13039\/501100001807","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":["link.springer.com"],"crossmark-restriction":false},"short-container-title":["Microb Ecol"],"published-print":{"date-parts":[[2022,8]]},"DOI":"10.1007\/s00248-021-01855-z","type":"journal-article","created":{"date-parts":[[2021,9,9]],"date-time":"2021-09-09T03:28:52Z","timestamp":1631158132000},"page":"539-555","update-policy":"https:\/\/doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":24,"title":["Does Organomineral Fertilizer Combined with Phosphate-Solubilizing Bacteria in Sugarcane Modulate Soil Microbial Community and Functions?"],"prefix":"10.1007","volume":"84","author":[{"ORCID":"https:\/\/orcid.org\/0000-0002-6283-9843","authenticated-orcid":false,"given":"Antonio Marcos Miranda","family":"Silva","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"German A.","family":"Estrada-Bonilla","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-2810-308X","authenticated-orcid":false,"given":"C\u00edntia Masuco","family":"Lopes","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-4981-100X","authenticated-orcid":false,"given":"Filipe Pereira","family":"Matteoli","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-9498-1070","authenticated-orcid":false,"given":"Simone Raposo","family":"Cotta","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-7848-7136","authenticated-orcid":false,"given":"Henrique Petry","family":"Feiler","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-3230-8686","authenticated-orcid":false,"given":"Yasmin Florentino","family":"Rodrigues","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-3938-0373","authenticated-orcid":false,"given":"Elke Jurandy Bran Nogueira","family":"Cardoso","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"297","published-online":{"date-parts":[[2021,9,9]]},"reference":[{"key":"1855_CR1","doi-asserted-by":"publisher","first-page":"20260","DOI":"10.1073\/pnas.1116437108","volume":"108","author":"D Tilman","year":"2011","unstructured":"Tilman D, Balzer C, Hill J, Befort BL (2011) Global food demand and the sustainable intensification of agriculture. PNAS 108:20260\u201320264. https:\/\/doi.org\/10.1073\/pnas.1116437108","journal-title":"PNAS"},{"key":"1855_CR2","doi-asserted-by":"publisher","first-page":"1617","DOI":"10.3389\/fpls.2017.01617","volume":"8","author":"R Jacoby","year":"2017","unstructured":"Jacoby R, Peukert M, Succurro A, Koprivova A, Kopriva S (2017) The role of soil microorganisms in plant mineral nutrition\u2014current knowledge and future directions. Front Plant Sci 8:1617. https:\/\/doi.org\/10.3389\/fpls.2017.01617","journal-title":"Front Plant Sci"},{"key":"1855_CR3","doi-asserted-by":"publisher","first-page":"29","DOI":"10.3389\/fsufs.2021.606815","volume":"5","author":"EK Mitter","year":"2021","unstructured":"Mitter EK, Tosi M, Obreg\u00f3n D, Dunfield KE, Germida JJ (2021) Rethinking crop nutrition in times of modern microbiology: innovative biofertilizer technologies. Front Sustain Food Syst 5:29. https:\/\/doi.org\/10.3389\/fsufs.2021.606815","journal-title":"Front Sustain Food Syst"},{"key":"1855_CR4","doi-asserted-by":"publisher","first-page":"1290","DOI":"10.1038\/s41467-017-01410-w","volume":"8","author":"A Muller","year":"2017","unstructured":"Muller A, Schader C, El-Hage Scialabba N, Br\u00fcggemann J, Isensee A, Erb KH, Smith P, Klocke P, Leiber F, Stolze M, Niggli U (2017) Strategies for feeding the world more sustainably with organic agriculture. Nat Commun 8:1290. https:\/\/doi.org\/10.1038\/s41467-017-01410-w","journal-title":"Nat Commun"},{"key":"1855_CR5","doi-asserted-by":"publisher","first-page":"31","DOI":"10.1016\/bs.agron.2020.02.001","volume":"162","author":"M M\u0105cik","year":"2020","unstructured":"M\u0105cik M, Gryta A, Fr\u0105c M (2020) Biofertilizers in agriculture: an overview on concepts, strategies and effects on soil microorganisms. Adv Agron 162:31\u201387. https:\/\/doi.org\/10.1016\/bs.agron.2020.02.001","journal-title":"Adv Agron"},{"key":"1855_CR6","first-page":"193","volume-title":"Sugarcane-Technology and Research","author":"ER Moraes","year":"2017","unstructured":"Moraes ER, Mageste JG, Lana RMQ, Da Silva RV, Camargo R (2017) Sugarcane: organo-mineral fertilizers and biostimulants. In: Oliveria AB (ed) Sugarcane-Technology and Research. IntechOpen, London, pp 193\u2013206"},{"key":"1855_CR7","doi-asserted-by":"publisher","first-page":"20","DOI":"10.1016\/j.geoderma.2018.12.036","volume":"339","author":"BMMN Borges","year":"2019","unstructured":"Borges BMMN, Abdala DB, Souze MF, Viglio LM, Coelho MJA, Pavinato PS, Frango HCJ (2019) Organomineral phosphate fertilizer from sugarcane byproduct and its effects on soil phosphorus availability and sugarcane yield. Geoderma 339:20\u201330. https:\/\/doi.org\/10.1016\/j.geoderma.2018.12.036","journal-title":"Geoderma"},{"key":"1855_CR8","doi-asserted-by":"publisher","first-page":"5398","DOI":"10.1038\/s41598-020-62315-1","volume":"10","author":"CAC Crusciol","year":"2020","unstructured":"Crusciol CAC, Campos MD, Martello JM, Alves CJ, Nascimento CAC, Pereira JCR, Cantarella H (2020) Organomineral fertilizer as source of P and K for sugarcane. Sci Rep 10:5398. https:\/\/doi.org\/10.1038\/s41598-020-62315-1","journal-title":"Sci Rep"},{"key":"1855_CR9","doi-asserted-by":"publisher","first-page":"2369","DOI":"10.1007\/s11368-021-02929-8","volume":"21","author":"Y Zhao","year":"2021","unstructured":"Zhao Y, Sun Y, Pei M, Fu J, Zhao L, Xiao X (2021) Enhanced rice yields are related to pronounced shifts in soil resident bacterial community structures in response to Rhodopseudomonas palustris and Bacillus subtilis inoculation. J Soils Sediments 21:2369\u20132380. https:\/\/doi.org\/10.1007\/s11368-021-02929-8","journal-title":"J Soils Sediments"},{"key":"1855_CR10","doi-asserted-by":"publisher","first-page":"587","DOI":"10.1186\/2193-1801-2-587","volume":"2","author":"SB Sharma","year":"2013","unstructured":"Sharma SB, Sayyed RZ, Trivedi MH, Gobi TA (2013) Phosphate solubilizing microbes: sustainable approach for managing phosphorus deficiency in agricultural soils. Springerplus 2:587. https:\/\/doi.org\/10.1186\/2193-1801-2-587","journal-title":"Springerplus"},{"key":"1855_CR11","doi-asserted-by":"publisher","first-page":"2054","DOI":"10.3389\/fmicb.2018.02054","volume":"9","author":"CE Granada","year":"2018","unstructured":"Granada CE, Passaglia LM, de Souza EM, Sperotto RA (2018) Is phosphate solubilization the forgotten child of plant growth-promoting rhizobacteria? Front Microbiol 9:2054. https:\/\/doi.org\/10.3389\/fmicb.2018.02054","journal-title":"Front Microbiol"},{"key":"1855_CR12","doi-asserted-by":"publisher","first-page":"971","DOI":"10.3389\/fmicb.2017.00971","volume":"8","author":"ET Alori","year":"2017","unstructured":"Alori ET, Glick BR, Babalola OO (2017) Microbial phosphorus solubilization and its potential for use in sustainable agriculture. Front Microbiol 8:971. https:\/\/doi.org\/10.3389\/fmicb.2017.00971","journal-title":"Front Microbiol"},{"key":"1855_CR13","doi-asserted-by":"publisher","first-page":"1670","DOI":"10.2134\/agronj2016.08.0483","volume":"109","author":"J Dhillon","year":"2017","unstructured":"Dhillon J, Torres G, Driver E, Figueiredo B, Raun WR (2017) World phosphorus use efficiency in cereal crops. Agron J 109:1670\u20131677. https:\/\/doi.org\/10.2134\/agronj2016.08.0483","journal-title":"Agron J"},{"key":"1855_CR14","doi-asserted-by":"publisher","first-page":"1444","DOI":"10.1111\/gcbb.12650","volume":"11","author":"A Soltangheisi","year":"2019","unstructured":"Soltangheisi A, Withers PJ, Pavinato PS, Cherubin MR, Rossetto R, Do Carmo JB, Rocha GC, Martinelli LA (2019) Improving phosphorus sustainability of sugarcane production in Brazil. GCB Bionergy 11:1444\u20131455. https:\/\/doi.org\/10.1111\/gcbb.12650","journal-title":"GCB Bionergy"},{"key":"1855_CR15","doi-asserted-by":"publisher","first-page":"15615","DOI":"10.1038\/s41598-020-72302-1","volume":"10","author":"PS Pavinato","year":"2020","unstructured":"Pavinato PS, Cherubin MR, Soltangheisi A, Rocha GC, Chadwick DR, Jones DL (2020) Revealing soil legacy phosphorus to promote sustainable agriculture in Brazil. Sci Rep 10:15615. https:\/\/doi.org\/10.1038\/s41598-020-72302-1","journal-title":"Sci Rep"},{"key":"1855_CR16","doi-asserted-by":"publisher","first-page":"1268","DOI":"10.1111\/nph.16924","volume":"229","author":"NS Raymond","year":"2021","unstructured":"Raymond NS, G\u00f3mez-Mu\u00f1oz B, van der Bom FJ et al (2021) Phosphate-solubilising microorganisms for improved crop productivity: a critical assessment. New Phytol 229:1268\u20131277. https:\/\/doi.org\/10.1111\/nph.16924","journal-title":"New Phytol"},{"key":"1855_CR17","doi-asserted-by":"publisher","first-page":"2858","DOI":"10.1038\/s41598-020-59793-8","volume":"10","author":"L Bononi","year":"2020","unstructured":"Bononi L, Chiaramonte JB, Pansa CC et al (2020) Phosphorus-solubilizing Trichoderma spp. from Amazon soils improve soybean plant growth. Sci Rep 10:2858. https:\/\/doi.org\/10.1038\/s41598-020-59793-8","journal-title":"Sci Rep"},{"key":"1855_CR18","doi-asserted-by":"publisher","first-page":"2715","DOI":"10.1080\/00103624.2018.1538374","volume":"49","author":"A Ditta","year":"2018","unstructured":"Ditta A, Imtiaz M, Mehmood S, Rizwan MS et al (2018) Rock phosphate-enriched organic fertilizer with phosphate-solubilizing microorganisms improves nodulation, growth, and yield of legumes. Commun Soil Sci Plant Anal 49:2715\u20132725. https:\/\/doi.org\/10.1080\/00103624.2018.1538374","journal-title":"Commun Soil Sci Plant Anal"},{"key":"1855_CR19","doi-asserted-by":"publisher","first-page":"589","DOI":"10.17957\/IJAB\/17.3.14.954","volume":"17","author":"A Ditta","year":"2015","unstructured":"Ditta A, Arshad M, Zahir ZA, Jamil A (2015) Comparative efficacy of rock phosphate enriched organic fertilizer vs. mineral phosphatic fertilizer for nodulation, growth and yield of lentil. Int J Agric Biol 17:589\u2013595. https:\/\/doi.org\/10.17957\/IJAB\/17.3.14.954","journal-title":"Int J Agric Biol"},{"key":"1855_CR20","doi-asserted-by":"publisher","first-page":"33","DOI":"10.1007\/s40093-017-0187-1","volume":"7","author":"A Ditta","year":"2018","unstructured":"Ditta A, Muhammad J, Imtiaz M et al (2018) Application of rock phosphate enriched composts increases nodulation, growth and yield of chickpea. Int J Recycl Org Waste Agricult 7:33\u201340. https:\/\/doi.org\/10.1007\/s40093-017-0187-1","journal-title":"Int J Recycl Org Waste Agricult"},{"key":"1855_CR21","doi-asserted-by":"publisher","first-page":"979","DOI":"10.3389\/fpls.2020.00979","volume":"11","author":"W Elhaissoufi","year":"2020","unstructured":"Elhaissoufi W, Khourchi S, Ibnyasser A, Ghoulam C et al (2020) Phosphate solubilizing rhizobacteria could have a stronger influence on wheat root traits and aboveground physiology than rhizosphere P solubilization. Front Plant Sci 11:979. https:\/\/doi.org\/10.3389\/fpls.2020.00979","journal-title":"Front Plant Sci"},{"key":"1855_CR22","doi-asserted-by":"publisher","first-page":"2213","DOI":"10.3389\/fmicb.2018.02213","volume":"9","author":"ET Alori","year":"2018","unstructured":"Alori ET, Babalola OO (2018) Microbial inoculants for improving crop quality and human health in Africa. Front Microbiol 9:2213. https:\/\/doi.org\/10.3389\/fmicb.2018.02213","journal-title":"Front Microbiol"},{"key":"1855_CR23","doi-asserted-by":"publisher","first-page":"43","DOI":"10.1016\/S0378-4290(02)00048-5","volume":"77","author":"B Sundara","year":"2002","unstructured":"Sundara B, Natarajan V, Hari K (2002) Influence of phosphorus solubilizing bacteria on the changes in soil available phosphorus and sugarcane and sugar yields. Field Crops Res 77:43\u201349. https:\/\/doi.org\/10.1016\/S0378-4290(02)00048-5","journal-title":"Field Crops Res"},{"key":"1855_CR24","doi-asserted-by":"publisher","first-page":"32","DOI":"10.3389\/fenvs.2020.00032","volume":"8","author":"PAL Rosa","year":"2020","unstructured":"Rosa PAL, Mortinho ES, Jalal A, Galindo FS, Buzetti S, Fernandes GC, Barco Neto M, Pavinato OS, Teixeira Filho MCM (2020) Inoculation with growth-promoting bacteria associated with the reduction of phosphate fertilization in sugarcane. Front environ sci 8:32. https:\/\/doi.org\/10.3389\/fenvs.2020.00032","journal-title":"Front environ sci"},{"key":"1855_CR25","doi-asserted-by":"publisher","DOI":"10.1016\/j.soilbio.2020.107874","volume":"148","author":"PC Mawarda","year":"2020","unstructured":"Mawarda PC, Le Roux X, Dirk van Elsas J, Salles JF (2020) Deliberate introduction of invisible invaders: a critical appraisal of the impact of microbial inoculants on soil microbial communities. Soil Biol Biochem 148:107874. https:\/\/doi.org\/10.1016\/j.soilbio.2020.107874","journal-title":"Soil Biol Biochem"},{"key":"1855_CR26","doi-asserted-by":"publisher","first-page":"299","DOI":"10.1016\/j.tim.2020.11.006","volume":"4","author":"CN Jack","year":"2020","unstructured":"Jack CN, Petipas RH, Cheeke TE, Rowland JL, Friesen ML (2020) Microbial inoculants: silver bullet or microbial Jurassic Park? Trends Microbiol 4:299\u2013208. https:\/\/doi.org\/10.1016\/j.tim.2020.11.006","journal-title":"Trends Microbiol"},{"key":"1855_CR27","doi-asserted-by":"publisher","first-page":"e00046","DOI":"10.1128\/AEM.00046-21","volume":"87","author":"Z Wang","year":"2021","unstructured":"Wang Z, Chen Z, Kowalchuk GA, Xu Z, Fu X, Kuramae EE (2021) Succession of the resident soil microbial community in response to periodic inoculations. AEM 87:e00046-e121. https:\/\/doi.org\/10.1128\/AEM.00046-21","journal-title":"AEM"},{"key":"1855_CR28","doi-asserted-by":"publisher","DOI":"10.1016\/j.apsoil.2020.103760","volume":"157","author":"GA Estrada-Bonilla","year":"2021","unstructured":"Estrada-Bonilla GA, Durrer A, Cardoso EJBN (2021) Use of compost and phosphate-solubilizing bacteria affect sugarcane mineral nutrition, phosphorus availability, and the soil bacterial community. Appl Soil Ecol 157:103760. https:\/\/doi.org\/10.1016\/j.apsoil.2020.103760","journal-title":"Appl Soil Ecol"},{"key":"1855_CR29","doi-asserted-by":"publisher","DOI":"10.1016\/j.jclepro.2021.126821","volume":"298","author":"CM Lopes","year":"2021","unstructured":"Lopes CM, Silva AMM, Estrada-Bonilla GA, Ferraz-Almeida R, Vieira JLV, Otto R, Vitti GC, Cardoso EJBN (2021) Improving the fertilizer value of sugarcane wastes through phosphate rock amendment and phosphate-solubilizing bacteria inoculation. J Clean Prod 298:126821. https:\/\/doi.org\/10.1016\/j.jclepro.2021.126821","journal-title":"J Clean Prod"},{"key":"1855_CR30","unstructured":"Soil Science Division Staff (2017) C. Ditzler, K. Scheffe, and H.C. Monger (ed) Soil survey manual. USDA Handbook 18. Government Printing Office, Washington, D.C. Accessed 13 Nov\u00a02020"},{"key":"1855_CR31","unstructured":"Embrapa (2018)\u00a0Brazilian system of soil classification, 5th edn. Embrapa, Rio Janeiro, p 356"},{"key":"1855_CR32","doi-asserted-by":"publisher","first-page":"308","DOI":"10.1016\/j.syapm.2017.05.003","volume":"40","author":"GA Estrada-Bonilla","year":"2017","unstructured":"Estrada-Bonilla GA, Lopes CM, Durrer A, Alves PRL, Passaglia N, Cardoso EJBN (2017) Effect of phosphate-solubilizing bacteria on phosphorus dynamics and the bacterial community during composting of sugarcane industry waste. Syst Appl Microbiol 40:308\u2013313. https:\/\/doi.org\/10.1016\/j.syapm.2017.05.003","journal-title":"Syst Appl Microbiol"},{"key":"1855_CR33","doi-asserted-by":"publisher","first-page":"1318","DOI":"10.1016\/j.jclepro.2016.06.074","volume":"133","author":"FV Scarpare","year":"2016","unstructured":"Scarpare FV, Hernandes TAD, Ruiz-Corr\u00eaa ST, Picoli MCA, Scanlon BR, Chagas MF, Duft DG, de F\u00e1tima CT (2016) Sugarcane land use and water resources assessment in the expansion area in Brazil. J Clean Prod 133:1318\u20131327. https:\/\/doi.org\/10.1016\/j.jclepro.2016.06.074","journal-title":"J Clean Prod"},{"key":"1855_CR34","unstructured":"INMET - Instituto Nacional de Meteorologia [National Institute of Meteorology].\u00a0https:\/\/bdmep.inmet.gov.br\/. Accessed 27 Feb\u00a02018"},{"key":"1855_CR35","unstructured":"van Raij B, Andrade JC, Cantarella H, Quaggio J\u00c1 (2001) An\u00e1lise qu\u00edmica para avalia\u00e7\u00e3o da fertilidade de solos tropicais = Chemical analysis for fertility assessment of tropical soils. Instituto Agron\u00f4mico de Campinas, Campinas"},{"key":"1855_CR36","doi-asserted-by":"publisher","first-page":"29","DOI":"10.1097\/00010694-193401000-00003","volume":"37","author":"AJ Walkley","year":"1934","unstructured":"Walkley AJ, Black IA (1934) Estimation of soil organic carbon by the chromic acid titration method. Soil Sci 37:29\u201338","journal-title":"Soil Sci"},{"key":"1855_CR37","doi-asserted-by":"publisher","first-page":"695","DOI":"10.1128\/aem.59.3.695-700.1993","volume":"59","author":"G Muyzer","year":"1993","unstructured":"Muyzer G (1993) Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA. AEM 59:695\u2013700","journal-title":"AEM"},{"key":"1855_CR38","doi-asserted-by":"publisher","first-page":"113","DOI":"10.1111\/j.1365-294X.1993.tb00005.x","volume":"2","author":"M Gardes","year":"1993","unstructured":"Gardes M, Bruns TD (1993) ITS primers with enhanced specificity for basidiomycetes \u2013 application to the identification of mycorrhizae and rusts. Mol Ecol 2:113\u2013118. https:\/\/doi.org\/10.1111\/j.1365-294X.1993.tb00005.x","journal-title":"Mol Ecol"},{"key":"1855_CR39","doi-asserted-by":"publisher","first-page":"62","DOI":"10.1111\/j.1747-0765.2007.00210.x","volume":"54","author":"M Sakurai","year":"2008","unstructured":"Sakurai M, Wasaki J, Tomizawa Y, Shinano T, Osaki M (2008) Analysis of bacterial communities on alkaline phosphatase in soil supplied with organic matter. Soil Sci Plant Nutr 54:62\u201371. https:\/\/doi.org\/10.1111\/j.1747-0765.2007.00210.x","journal-title":"Soil Sci Plant Nutr"},{"key":"1855_CR40","doi-asserted-by":"publisher","first-page":"118","DOI":"10.3389\/fenvs.2018.00118","volume":"6","author":"R Voll\u00fa","year":"2018","unstructured":"Voll\u00fa R, Cotta SR, Jurelevicius D, Leite DCDA, Parente CET, Malm O, Martins DC, Resende AV, Marriel IE, Seldin L (2018) Response of the bacterial communities associated with maize rhizosphere to poultry litter as an organomineral fertilizer. Front Environ Sci 6:118. https:\/\/doi.org\/10.3389\/fenvs.2018.00118","journal-title":"Front Environ Sci"},{"key":"1855_CR41","doi-asserted-by":"publisher","first-page":"fiab034","DOI":"10.1093\/femsec\/fiab034","volume":"97","author":"JR Gaiero","year":"2021","unstructured":"Gaiero JR, Tosi M, Bent E, Boitt G, Khosla K, Turner BL, Richardson AE, Condron LM, Dunfield KE (2021) Soil microbial communities influencing organic phosphorus mineralization in a coastal dune chronosequence in New Zealand. FEMS Microbiol Ecol 97:fiab034. https:\/\/doi.org\/10.1093\/femsec\/fiab034","journal-title":"FEMS Microbiol Ecol"},{"key":"1855_CR42","doi-asserted-by":"publisher","first-page":"852","DOI":"10.1038\/s41587-019-0209-9","volume":"37","author":"E Bolyen","year":"2019","unstructured":"Bolyen E, Rideout JR, Dillon MR et al (2019) Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2. Nat Biotechnol 37:852\u2013857. https:\/\/doi.org\/10.1038\/s41587-019-0209-9","journal-title":"Nat Biotechnol"},{"key":"1855_CR43","doi-asserted-by":"publisher","first-page":"581","DOI":"10.1038\/nmeth.3869","volume":"13","author":"BJ Callahan","year":"2016","unstructured":"Callahan BJ, McMurdie PJ, Rosen MJ, Han AW, Johnson AJA, Holmes SP (2016) DADA2: high-resolution sample inference from Illumina amplicon data. Nat Methods 13:581\u2013583. https:\/\/doi.org\/10.1038\/nmeth.3869","journal-title":"Nat Methods"},{"key":"1855_CR44","doi-asserted-by":"publisher","first-page":"3059","DOI":"10.1093\/nar\/gkf436","volume":"30","author":"K Katoh","year":"2002","unstructured":"Katoh K (2002) MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform. Nucleic Acids Res 30:3059\u20133066. https:\/\/doi.org\/10.1093\/nar\/gkf436","journal-title":"Nucleic Acids Res"},{"key":"1855_CR45","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1186\/s40168-018-0470-z","volume":"6","author":"NA Bokulich","year":"2018","unstructured":"Bokulich NA, Kaehler BD, Rideout JR et al (2018) Optimizing taxonomic classification of marker-gene amplicon sequences with QIIME 2\u2019s q2-feature-classifier plugin. Microbiome 6:1\u201317. https:\/\/doi.org\/10.1186\/s40168-018-0470-z","journal-title":"Microbiome"},{"key":"1855_CR46","doi-asserted-by":"publisher","first-page":"590","DOI":"10.1093\/nar\/gks1219","volume":"41","author":"C Quast","year":"2013","unstructured":"Quast C, Pruesse E, Yilmaz P, Gerken J, Schweer T, Yarka P, Peplies J, Gl\u00f6ckner FO (2013) The SILVA ribosomal RNA gene database project: improved data processing and web-based tools. Nucleic Acids Res 41:590\u2013596. https:\/\/doi.org\/10.1093\/nar\/gks1219","journal-title":"Nucleic Acids Res"},{"key":"1855_CR47","doi-asserted-by":"publisher","first-page":"D259","DOI":"10.1093\/nar\/gky1022","volume":"47","author":"RH Nilsson","year":"2019","unstructured":"Nilsson RH, Larsson KH, Taylor AFS, Bengtsson-Palme J, Jeppsen TS, Schigel D, Kennedy P, Picard K, Gl\u00f6ckner FO, Tedersoo L, Saar I, K\u00f5ljalg U, Abarenkov K (2019) The UNITE database for molecular identification of fungi: handling dark taxa and parallel taxonomic classifications. Nucleic Acids Res 47:D259\u2013D264. https:\/\/doi.org\/10.1093\/nar\/gky1022","journal-title":"Nucleic Acids Res"},{"key":"1855_CR48","doi-asserted-by":"publisher","first-page":"685","DOI":"10.1038\/s41587-020-0548-6","volume":"38","author":"GM Douglas","year":"2020","unstructured":"Douglas GM, Maffei VJ, Zaneveld JR et al (2020) PICRUSt2 for prediction of metagenome functions. Nat Biotechnol 38:685\u2013688. https:\/\/doi.org\/10.1038\/s41587-020-0548-6","journal-title":"Nat Biotechnol"},{"key":"1855_CR49","doi-asserted-by":"publisher","first-page":"2593","DOI":"10.1038\/ismej.2016.65","volume":"10","author":"P Trivedi","year":"2016","unstructured":"Trivedi P, Delgado-Baquerizo M, Trivedi C, Hu H, Anderson IC, Jeffries TC, Zhou J, Singh BK (2016) Microbial regulation of the soil carbon cycle: evidence from gene\u2013enzyme relationships. ISME J 10:2593\u20132604. https:\/\/doi.org\/10.1038\/ismej.2016.65","journal-title":"ISME J"},{"key":"1855_CR50","doi-asserted-by":"publisher","first-page":"1600","DOI":"10.1038\/s41396-020-0632-4","volume":"14","author":"JL Liang","year":"2020","unstructured":"Liang JL, Liu J, Jia P, Yang TT, Zeng QW, Zhang SC, Liao B, Shu WS, Li JT (2020) Novel phosphate-solubilizing bacteria enhance soil phosphorus cycling following ecological restoration of land degraded by mining. ISME J 14:1600\u20131613. https:\/\/doi.org\/10.1038\/s41396-020-0632-4","journal-title":"ISME J"},{"key":"1855_CR51","doi-asserted-by":"publisher","first-page":"241","DOI":"10.1016\/j.funeco.2015.06.006","volume":"20","author":"NH Nguyen","year":"2016","unstructured":"Nguyen NH, Song Z, Bates ST, Branco S, Tedersoo L, Menke J, Schilling js, Kennedy PG, (2016) FUNGuild: an open annotation tool for parsing fungal community datasets by ecological guild. Fungal Ecol 20:241\u2013248. https:\/\/doi.org\/10.1016\/j.funeco.2015.06.006","journal-title":"Fungal Ecol"},{"key":"1855_CR52","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pcbi.1003531","volume":"10","author":"PJ McMurdie","year":"2014","unstructured":"McMurdie PJ, Holmes S (2014) Waste not, want not: why rarefying microbiome data is inadmissible. PLoS Comput Biol 10:e1003531. https:\/\/doi.org\/10.1371\/journal.pcbi.1003531","journal-title":"PLoS Comput Biol"},{"key":"1855_CR53","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0061217","volume":"8","author":"PJ McMurdie","year":"2013","unstructured":"McMurdie PJ, Holmes S (2013) phyloseq: an R package for reproducible interactive analysis and graphics of microbiome census data. PLoS ONE 8:e61217. https:\/\/doi.org\/10.1371\/journal.pone.0061217","journal-title":"PLoS ONE"},{"key":"1855_CR54","unstructured":"Bisanz JE (2019) Tutorial\u202f: integrating QIIME2 and R for data visualization and analysis using. January, 2021"},{"key":"1855_CR55","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1016\/0006-3207(92)91201-3","volume":"61","author":"DP Faith","year":"1992","unstructured":"Faith DP (1992) Conservation evaluation and phylogenetic diversity. Biol Conserv 61:1\u201310. https:\/\/doi.org\/10.1016\/0006-3207(92)91201-3","journal-title":"Biol Conserv"},{"key":"1855_CR56","doi-asserted-by":"publisher","first-page":"32","DOI":"10.1111\/j.1442-9993.2001.01070.pp.x","volume":"26","author":"MJ Anderso","year":"2001","unstructured":"Anderso MJ (2001) A new method for non-parametric multivariate analysis of variance. Austral Ecol 26:32\u201346. https:\/\/doi.org\/10.1111\/j.1442-9993.2001.01070.pp.x","journal-title":"Austral Ecol"},{"key":"1855_CR57","first-page":"1","volume":"2","author":"J Oksanen","year":"2019","unstructured":"Oksanen J, Blanchet FG, Friendly M, Kindt R, Legendre P, Mcglinn D, Minchin PR, O\u2019hara RB, Simpson GL, Solymos P, Henry M, Stevens H, Szoecs E, Maintainer HW (2019) Package \u201cvegan\u201d Title Community Ecology Package. Community Ecol Packag 2:1\u2013297","journal-title":"Community Ecol Packag"},{"key":"1855_CR58","doi-asserted-by":"publisher","unstructured":"Wickham, H. (2016) ggplot2: Create elegant data visualisations using the grammar of graphics. 2nd. Ed. Springer, ISSN 2197\u20135744. https:\/\/doi.org\/10.1007\/978-3-319-24277-4","DOI":"10.1007\/978-3-319-24277-4"},{"key":"1855_CR59","doi-asserted-by":"publisher","first-page":"142","DOI":"10.1111\/j.1574-6941.2007.00375.x","volume":"62","author":"A Ramette","year":"2007","unstructured":"Ramette A (2007) Multivariate analyses in microbial ecology. FEMS Microbiol Ecol 62:142\u2013160. https:\/\/doi.org\/10.1111\/j.1574-6941.2007.00375.x","journal-title":"FEMS Microbiol Ecol"},{"key":"1855_CR60","doi-asserted-by":"publisher","first-page":"139","DOI":"10.1093\/bioinformatics\/btp616","volume":"26","author":"MD Robinson","year":"2010","unstructured":"Robinson MD, McCarthy DJ, Smyth GK (2010) edgeR: a Bioconductor package for differential expression analysis of digital gene expression data. Bioinformatics 26:139\u2013140. https:\/\/doi.org\/10.1093\/bioinformatics\/btp616","journal-title":"Bioinformatics"},{"key":"1855_CR61","doi-asserted-by":"publisher","first-page":"289","DOI":"10.1111\/j.2517-6161.1995.tb02031.x","volume":"57","author":"Y Benjamini","year":"1995","unstructured":"Benjamini Y, Hochberg Y (1995) Controlling the false discovery rate: a practical and powerful approach to multiple testing. J R Stat Soc Ser B Methodol 57:289\u2013300. https:\/\/doi.org\/10.1111\/j.2517-6161.1995.tb02031.x","journal-title":"J R Stat Soc Ser B Methodol"},{"key":"1855_CR62","doi-asserted-by":"crossref","unstructured":"Pollard KS, Dudoit S, van der Laan MJ (2005). Multiple testing procedures: R multtest package and applications to genomics. In Gentleman R, Carey V, Huber W, Irizarry R, Dudoit S (eds) Bioinformatics and Computational Biology Solutions Using R and Bioconductor. Springer.","DOI":"10.1007\/0-387-29362-0_15"},{"key":"1855_CR63","unstructured":"R Core Team (2020) R: a language and environment for statistical computing. https:\/\/www.r-project.org\/. Accessed Jan\u00a02021"},{"key":"1855_CR64","doi-asserted-by":"publisher","first-page":"205","DOI":"10.1016\/j.soilbio.2018.12.012","volume":"130","author":"JI Rilling","year":"2019","unstructured":"Rilling JI, Acu\u00f1a JJ, Nannipieri P, Cassan F et al (2019) Current opinion and perspectives on the methods for tracking and monitoring plant growth-promoting bacteria. Soil Biol Biochem 130:205\u2013219. https:\/\/doi.org\/10.1016\/j.soilbio.2018.12.012","journal-title":"Soil Biol Biochem"},{"key":"1855_CR65","doi-asserted-by":"publisher","first-page":"155","DOI":"10.1016\/j.pbi.2017.04.018","volume":"38","author":"OM Finkel","year":"2017","unstructured":"Finkel OM, Castrillo G, Herrera Paredes S, Salas Gonz\u00e1lez I, Dangl JL (2017) Understanding and exploiting plant beneficial microbes. Curr Opin Plant Biol 38:155\u2013163. https:\/\/doi.org\/10.1016\/j.pbi.2017.04.018","journal-title":"Curr Opin Plant Biol"},{"key":"1855_CR66","doi-asserted-by":"publisher","first-page":"140","DOI":"10.1016\/j.tibtech.2018.11.011","volume":"37","author":"LM Kaminsky","year":"2019","unstructured":"Kaminsky LM, Trexler RV, Malik RJ, Hockett KL, Bell TH (2019) The inherent conflicts in developing soil microbial inoculants. Trends Biotechnol 37:140\u2013151. https:\/\/doi.org\/10.1016\/j.tibtech.2018.11.011","journal-title":"Trends Biotechnol"},{"key":"1855_CR67","doi-asserted-by":"publisher","first-page":"6","DOI":"10.3389\/fpls.2020.00006","volume":"11","author":"I Romano","year":"2020","unstructured":"Romano I, Ventorino V, Pepe O (2020) Effectiveness of plant beneficial microbes: overview of the methodological approaches for the assessment of root colonization and persistence. Front Plant Sci 11:6. https:\/\/doi.org\/10.3389\/fpls.2020.00006","journal-title":"Front Plant Sci"},{"key":"1855_CR68","doi-asserted-by":"publisher","first-page":"1159","DOI":"10.1073\/pnas.1109326109","volume":"109","author":"JD van Elsas","year":"2012","unstructured":"van Elsas JD, Chiurazzi M, Mallon CA, Elhottov\u00e3 D, Kri\u0161t\u016ffek V, Salles JF (2012) Microbial diversity determines the invasion of soil by a bacterial pathogen. Proc Natl Acad Sci USA 109:1159\u20131164. https:\/\/doi.org\/10.1073\/pnas.1109326109","journal-title":"Proc Natl Acad Sci USA"},{"key":"1855_CR69","doi-asserted-by":"publisher","first-page":"164","DOI":"10.1007\/s13205-020-2099-4","volume":"10","author":"J Liu","year":"2020","unstructured":"Liu J, Qi W, Li Q, Wang SG, Song C, Yuan XZ (2020) Exogenous phosphorus-solubilizing bacteria changed the rhizosphere microbial community indirectly. 3 Biotech 10:164. https:\/\/doi.org\/10.1007\/s13205-020-2099-4","journal-title":"3 Biotech"},{"key":"1855_CR70","doi-asserted-by":"publisher","first-page":"71","DOI":"10.1186\/s13568-015-0154-z","volume":"5","author":"BB Marks","year":"2015","unstructured":"Marks BB, Meg\u00edas M, Ollero FJ et al (2015) Maize growth promotion by inoculation with Azospirillum brasilense and metabolites of Rhizobium tropici enriched on lipo-chitooligosaccharides (LCOs). AMB Expr 5:71. https:\/\/doi.org\/10.1186\/s13568-015-0154-z","journal-title":"AMB Expr"},{"key":"1855_CR71","doi-asserted-by":"publisher","first-page":"153","DOI":"10.1186\/s13568-017-0453-7","volume":"7","author":"J Fukami","year":"2017","unstructured":"Fukami J, Ollero FJ, Meg\u00edas M, Hungria M (2017) Phytohormones and induction of plant-stress tolerance and defense genes by seed and foliar inoculation with Azospirillum brasilense cells and metabolites promote maize growth. AMB Expr 7:153. https:\/\/doi.org\/10.1186\/s13568-017-0453-7","journal-title":"AMB Expr"},{"key":"1855_CR72","doi-asserted-by":"publisher","DOI":"10.1590\/0001-3765201920180990","volume":"91","author":"JEL Antunes","year":"2019","unstructured":"Antunes JEL, Freitas ADS, Oliveira LMS et al (2019) Sugarcane inoculated with endophytic diazotrophic bacteria: effects on yield, biological nitrogen fixation and industrial characteristics. An Acad Bras Ci\u00eanc 91:e20180990. https:\/\/doi.org\/10.1590\/0001-3765201920180990","journal-title":"An Acad Bras Ci\u00eanc"},{"key":"1855_CR73","doi-asserted-by":"publisher","first-page":"299","DOI":"10.1007\/s00374-019-01430-2","volume":"56","author":"PS Bindraban","year":"2020","unstructured":"Bindraban PS, Dimkpa CO, Pandey R (2020) Exploring phosphorus fertilizers and fertilization strategies for improved human and environmental health. Biol Fertil Soils 56:299\u2013317. https:\/\/doi.org\/10.1007\/s00374-019-01430-2","journal-title":"Biol Fertil Soils"},{"key":"1855_CR74","doi-asserted-by":"publisher","first-page":"133","DOI":"10.1023\/A:1020663916259","volume":"245","author":"P Gyaneshwar","year":"2002","unstructured":"Gyaneshwar P, Kumar GN, Parekh LJ, Poole PS (2002) Role of soil microorganisms in improving P nutrition of plants. Plant Soil 245:133\u2013143. https:\/\/doi.org\/10.1023\/A:1020663916259","journal-title":"Plant Soil"},{"key":"1855_CR75","doi-asserted-by":"publisher","first-page":"7082","DOI":"10.3390\/su12177082","volume":"12","author":"X Wu","year":"2020","unstructured":"Wu X, Ren L, Luo L, Zhang J, Zhang L, Huang H (2020) Bacterial and fungal community dynamics and shaping factors during agricultural waste composting with zeolite and biochar addition. Sustainability 12:7082. https:\/\/doi.org\/10.3390\/su12177082","journal-title":"Sustainability"},{"key":"1855_CR76","doi-asserted-by":"publisher","first-page":"33","DOI":"10.1016\/j.apsoil.2005.12.002","volume":"34","author":"YP Chen","year":"2006","unstructured":"Chen YP, Rekha PD, Arun AB, Shen FT, Lai WA, Young CC (2006) Phosphate solubilizing bacteria from subtropical soil and their tricalcium phosphate solubilizing abilities. Appl Soil Ecol 34:33\u201341. https:\/\/doi.org\/10.1016\/j.apsoil.2005.12.002","journal-title":"Appl Soil Ecol"},{"key":"1855_CR77","doi-asserted-by":"publisher","first-page":"174","DOI":"10.1186\/1471-2180-9-174","volume":"9","author":"P Vyas","year":"2009","unstructured":"Vyas P, Gulati A (2009) Organic acid production in vitro and plant growth promotion in maize under controlled environment by phosphate-solubilizing fluorescent Pseudomonas. BMC Microbiol 9:174. https:\/\/doi.org\/10.1186\/1471-2180-9-174","journal-title":"BMC Microbiol"},{"key":"1855_CR78","doi-asserted-by":"publisher","DOI":"10.1590\/0001-3765202020180426","volume":"92","author":"LF Santos","year":"2020","unstructured":"Santos LF, Lana RP, Da Silva MCS, Veloso TGR, Kasuya MCM, Riberio KG (2020) Effective microorganisms inoculant: diversity and effect on the germination of palisade grass seeds. An Acad Bras Ci\u00eanc 92:e20180426. https:\/\/doi.org\/10.1590\/0001-3765202020180426","journal-title":"An Acad Bras Ci\u00eanc"},{"key":"1855_CR79","doi-asserted-by":"publisher","DOI":"10.1155\/2013\/863240","volume":"2013","author":"D Trabelsi","year":"2013","unstructured":"Trabelsi D, Mhamdi R (2013) Microbial inoculants and their impact on soil microbial communities: a review. Biomed Res Int 2013:863240. https:\/\/doi.org\/10.1155\/2013\/863240","journal-title":"Biomed Res Int"},{"key":"1855_CR80","doi-asserted-by":"publisher","DOI":"10.1111\/brv.12779","author":"JT Li","year":"2021","unstructured":"Li JT, Lu JL, Wang HY et al (2021) A comprehensive synthesis unveils the mysteries of phosphate-solubilizing microbes. Biol. https:\/\/doi.org\/10.1111\/brv.12779","journal-title":"Biol"},{"key":"1855_CR81","doi-asserted-by":"publisher","first-page":"35","DOI":"10.1111\/j.1574-6941.2003.tb01043.x","volume":"43","author":"RI Griffiths","year":"2003","unstructured":"Griffiths RI, Whiteley AS, O\u2019Donnell AG, Bailey MJ (2003) Influence of depth and sampling time on bacterial community structure in an upland grassland soil. FEMS Microbiol Ecol 43:35\u201343. https:\/\/doi.org\/10.1111\/j.1574-6941.2003.tb01043.x","journal-title":"FEMS Microbiol Ecol"},{"key":"1855_CR82","doi-asserted-by":"publisher","first-page":"11512","DOI":"10.1073\/pnas.0801925105","volume":"105","author":"SD Allison","year":"2008","unstructured":"Allison SD, Martiny JBH (2008) Resistance, resilience, and redundancy in microbial communities. PNAS 105:11512\u201311519. https:\/\/doi.org\/10.1073\/pnas.0801925105","journal-title":"PNAS"},{"key":"1855_CR83","doi-asserted-by":"publisher","first-page":"112","DOI":"10.1111\/j.1574-6976.2012.00343.x","volume":"37","author":"BS Griffiths","year":"2013","unstructured":"Griffiths BS, Philippot L (2013) Insights into the resistance and resilience of the soil microbial community. FEMS Microbiol Rev 37:112\u2013129. https:\/\/doi.org\/10.1111\/j.1574-6976.2012.00343.x","journal-title":"FEMS Microbiol Rev"},{"key":"1855_CR84","doi-asserted-by":"publisher","first-page":"142","DOI":"10.1186\/s40168-018-0525-1","volume":"6","author":"KS Louren\u00e7o","year":"2018","unstructured":"Louren\u00e7o KS, Suleiman AKA, Pijl A et al (2018) Resilience of the resident soil microbiome to organic and inorganic amendment disturbances and to temporary bacterial invasion. Microbiome 6:142. https:\/\/doi.org\/10.1186\/s40168-018-0525-1","journal-title":"Microbiome"},{"key":"1855_CR85","doi-asserted-by":"publisher","first-page":"1338","DOI":"10.1111\/1462-2920.12925","volume":"18","author":"YK Yeoh","year":"2015","unstructured":"Yeoh YK, Paungfoo-Lonhienne C, Dennis PG et al (2015) The core root microbiome of sugarcanes cultivated under varying nitrogen fertilizer application. Environ Microbiol 18:1338\u20131351. https:\/\/doi.org\/10.1111\/1462-2920.12925","journal-title":"Environ Microbiol"},{"key":"1855_CR86","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0245626","volume":"16","author":"H Niu","year":"2021","unstructured":"Niu H, Pang Z, Fallah N et al (2021) Diversity of microbial communities and soil nutrients in sugarcane rhizosphere soil under water soluble fertilizer. PLoS ONE 16:e0245626. https:\/\/doi.org\/10.1371\/journal.pone.0245626","journal-title":"PLoS ONE"},{"key":"1855_CR87","doi-asserted-by":"publisher","first-page":"37","DOI":"10.1186\/s13568-015-0117-4","volume":"5","author":"B Liang","year":"2015","unstructured":"Liang B, Wang LY, Mbadinga SM, Liu JF, Yang SZ, Gu JD, Mu BZ (2015) Anaerolineaceae and Methanosaeta turned to be the dominant microorganisms in alkanes-dependent methanogenic culture after long-term of incubation. AMB Express 5:37. https:\/\/doi.org\/10.1186\/s13568-015-0117-4","journal-title":"AMB Express"},{"key":"1855_CR88","doi-asserted-by":"publisher","first-page":"1401","DOI":"10.3389\/fmicb.2018.01401","volume":"9","author":"ZT Aanderud","year":"2018","unstructured":"Aanderud ZT, Saurey S, Ball BA et al (2018) Stoichiometric shifts in soil C:N: P promote bacterial taxa dominance, maintain biodiversity, and deconstruct community assemblages. Front Microbiol 9:1401. https:\/\/doi.org\/10.3389\/fmicb.2018.01401","journal-title":"Front Microbiol"},{"key":"1855_CR89","doi-asserted-by":"publisher","first-page":"105","DOI":"10.1016\/j.apsoil.2016.12.001","volume":"111","author":"J Cheng","year":"2017","unstructured":"Cheng J, Chen Y, He T, Liao R, Liu R, Yi M, Huang L, Yang Z, Fu T, Li X (2017) Soil nitrogen leaching decreases as biogas slurry DOC\/N ratio increases. Appl Soil Ecol 111:105\u2013113. https:\/\/doi.org\/10.1016\/j.apsoil.2016.12.001","journal-title":"Appl Soil Ecol"},{"key":"1855_CR90","doi-asserted-by":"publisher","first-page":"728","DOI":"10.1038\/s41396-017-0003-y","volume":"12","author":"CA Mallon","year":"2018","unstructured":"Mallon CA, Le Roux X, van Doorn GS, Dini-Andreote F, Poly F, Salles JF (2018) The impact of failure: unsuccessful bacterial invasions steer the soil microbial community away from the invader\u2019s niche. ISME J 12:728\u2013741. https:\/\/doi.org\/10.1038\/s41396-017-0003-y","journal-title":"ISME J"},{"key":"1855_CR91","doi-asserted-by":"crossref","unstructured":"Bernal, MP, Sommer, SG, Chadwick, D, Qing, C, Guoxue, L, Michel Jr, FC (2017) Current approaches and future trends in compost quality criteria for agronomic, environmental, and human health benefits. In Sparks DL (eds) Advances in agronomy. Academic Press, pp 43\u2013233","DOI":"10.1016\/bs.agron.2017.03.002"},{"key":"1855_CR92","doi-asserted-by":"publisher","first-page":"489","DOI":"10.1007\/s11104-020-04637-7","volume":"455","author":"MM Obermeier","year":"2020","unstructured":"Obermeier MM, Minarsch EML, Durai Raj AC, Rineau F, Schr\u00f6der P (2020) Changes of soil-rhizosphere microbiota after organic amendment application in a Hordeum vulgare L. short-term greenhouse experiment. Plant Soil 455:489\u2013506. https:\/\/doi.org\/10.1007\/s11104-020-04637-7","journal-title":"Plant Soil"},{"key":"1855_CR93","doi-asserted-by":"publisher","first-page":"107","DOI":"10.1111\/j.1574-6976.2009.00192.x","volume":"34","author":"D B\u00fcttner","year":"2010","unstructured":"B\u00fcttner D, Bonas U (2010) Regulation and secretion of Xanthomonas virulence factors. FEMS Microbiol Rev 34:107\u2013133. https:\/\/doi.org\/10.1111\/j.1574-6976.2009.00192.x","journal-title":"FEMS Microbiol Rev"},{"key":"1855_CR94","doi-asserted-by":"crossref","unstructured":"Silva LCC, Targino BN, Furtado MM, de Oliveira Pinto MA, Rodarte MP, Hungaro HM (2017) Xanthan: biotechnological production and applications. In Da Cruz JC, S\u00e9rvulo EFC, De Castro AM (eds) Microbial Production of Food Ingredients and Additives. Academic Press, pp 385\u2013422","DOI":"10.1016\/B978-0-12-811520-6.00013-1"},{"key":"1855_CR95","doi-asserted-by":"publisher","first-page":"162","DOI":"10.19044\/esj.2016.v12n10p%25p","volume":"12","author":"DK Diyarova","year":"2016","unstructured":"Diyarova DK (2016) The role of wood-decaying fungi in the carbon cycle of forest ecosystems and the main ecological factors. Eur Sci J 12:162\u2013166. https:\/\/doi.org\/10.19044\/esj.2016.v12n10p%25p","journal-title":"Eur Sci J"},{"key":"1855_CR96","doi-asserted-by":"crossref","unstructured":"Peralta RM, da Silva BP, C\u00f4rrea RCG, Kato CG, Seixas FAV, Bracht A (2017) Enzymes from basidiomycetes\u2014peculiar and efficient tools for biotechnology. In Fogarty WM, Kelly CT (eds) Biotechnology of microbial enzymes. Academic Press, pp 119\u2013149","DOI":"10.1016\/B978-0-12-803725-6.00005-4"},{"key":"1855_CR97","doi-asserted-by":"publisher","first-page":"1562","DOI":"10.3389\/fmicb.2019.01562","volume":"10","author":"W Yang","year":"2019","unstructured":"Yang W, Jing X, Guan Y, Zhai C, Wang T, Shi D, Sun W, Gu S (2019) Response of fungal communities and co-occurrence network patterns to compost amendment in black soil of Northeast China. Front microbiol 10:1562. https:\/\/doi.org\/10.3389\/fmicb.2019.01562","journal-title":"Front microbiol"},{"key":"1855_CR98","doi-asserted-by":"publisher","first-page":"5137","DOI":"10.1111\/1462-2920.13512","volume":"18","author":"RB Sun","year":"2016","unstructured":"Sun RB, Dsouza M, Gilbert JA, Guo XS, Wang DZ, Guo ZB, Ni Y, Chu H (2016) Fungal community composition in soils subjected to long-term chemical fertilization is most influenced by the type of organic matter. Environ Microbiol 18:5137\u20135150. https:\/\/doi.org\/10.1111\/1462-2920.13512","journal-title":"Environ Microbiol"},{"key":"1855_CR99","doi-asserted-by":"publisher","first-page":"295","DOI":"10.1016\/j.apsoil.2011.11.009","volume":"61","author":"KO Amprayn","year":"2012","unstructured":"Amprayn KO, Rose MT, Kecsk\u00e9s M, Pereg L, Nguyen HT, Kennedy IR (2012) Plant growth promoting characteristics of soil yeast (Candida tropicalis HY) and its effectiveness for promoting rice growth. Appl Soil Ecol 61:295\u2013299. https:\/\/doi.org\/10.1016\/j.apsoil.2011.11.009","journal-title":"Appl Soil Ecol"},{"key":"1855_CR100","doi-asserted-by":"publisher","first-page":"727","DOI":"10.1134\/S0026261716060187","volume":"85","author":"RA Streletskii","year":"2016","unstructured":"Streletskii RA, Kachalkin AV, Glushakova AM, Demin VV, Chernov IY (2016) Quantitative determination of indole-3-acetic acid in yeasts using high performance liquid chromatography\u2013tandem mass spectrometry. Microbiology 85:727\u2013736. https:\/\/doi.org\/10.1134\/S0026261716060187","journal-title":"Microbiology"},{"key":"1855_CR101","doi-asserted-by":"publisher","first-page":"433","DOI":"10.1016\/j.funbio.2015.12.006","volume":"120","author":"SF Fu","year":"2016","unstructured":"Fu SF, Sun PF, Lu HY, Wei JY, Xiao HS, Fang WT, Cheng BY, Chou JY (2016) Plant growth-promoting traits of yeasts isolated from the phyllosphere and rhizosphere of Drosera spatulata Lab. Fungal Biol 120:433\u2013448. https:\/\/doi.org\/10.1016\/j.funbio.2015.12.006","journal-title":"Fungal Biol"},{"key":"1855_CR102","doi-asserted-by":"publisher","first-page":"369","DOI":"10.1002\/yea.3310","volume":"35","author":"AM Yurkov","year":"2018","unstructured":"Yurkov AM (2018) Yeasts of the soil\u2013obscure but precious. Yeast 35:369\u2013378. https:\/\/doi.org\/10.1002\/yea.3310","journal-title":"Yeast"},{"key":"1855_CR103","doi-asserted-by":"publisher","first-page":"99","DOI":"10.1007\/978-1-4757-0611-6_3","volume-title":"Advances in Microbial Ecology","author":"JH Andrews","year":"1986","unstructured":"Andrews JH, Harris RF (1986) r- and K-selection and microbial ecology. In: Marshall KC (ed) Advances in Microbial Ecology. Springer, Boston, pp 99\u2013147"},{"key":"1855_CR104","doi-asserted-by":"publisher","first-page":"1354","DOI":"10.1890\/05-1839","volume":"88","author":"N Fierer","year":"2007","unstructured":"Fierer N, Bradford MA, Jackson RB (2007) Toward an ecological classification of soil bacteria. Ecology 88:1354\u20131364. https:\/\/doi.org\/10.1890\/05-1839","journal-title":"Ecology"},{"key":"1855_CR105","doi-asserted-by":"publisher","first-page":"230","DOI":"10.1111\/j.1469-8137.2007.02055.x","volume":"174","author":"IA Dickie","year":"2007","unstructured":"Dickie IA (2007) Host preference, niches and fungal diversity. New Phytol 174:230\u2013233. https:\/\/doi.org\/10.1111\/j.1469-8137.2007.02055.x","journal-title":"New Phytol"},{"key":"1855_CR106","doi-asserted-by":"publisher","first-page":"30","DOI":"10.1007\/s13280-017-0972-0","volume":"47","author":"A Ceci","year":"2018","unstructured":"Ceci A, Pinzari F, Russo F, Maggi O, Persiani AM (2018) Saprotrophic soil fungi to improve phosphorus solubilisation and release: In vitro abilities of several species. Ambio 47:30\u201340. https:\/\/doi.org\/10.1007\/s13280-017-0972-0","journal-title":"Ambio"},{"key":"1855_CR107","doi-asserted-by":"publisher","first-page":"1731","DOI":"10.1007\/s00449-019-02169-8","volume":"42","author":"Z Wang","year":"2019","unstructured":"Wang Z, Gao W, Liu X, Chen P, Lu W, Wang F, Li H, Sun Q, Zhang H (2019) Efficient production of polysaccharide by Chaetomium globosum CGMCC 6882 through co-culture with host plant Gynostemma pentaphyllum. Bioprocess Biosyst Eng 42:1731\u20131738. https:\/\/doi.org\/10.1007\/s00449-019-02169-8","journal-title":"Bioprocess Biosyst Eng"},{"key":"1855_CR108","doi-asserted-by":"publisher","first-page":"404","DOI":"10.1016\/j.indcrop.2008.07.008","volume":"29","author":"I Dogaris","year":"2009","unstructured":"Dogaris I, Vakontios G, Kalogeris E, Mamma D, Kekos D (2009) Induction of cellulases and hemicellulases from Neurospora crassa under solid-state cultivation for bioconversion of sorghum bagasse into ethanol. Ind Crops Prod 29:404\u2013411. https:\/\/doi.org\/10.1016\/j.indcrop.2008.07.008","journal-title":"Ind Crops Prod"},{"key":"1855_CR109","doi-asserted-by":"publisher","first-page":"1561","DOI":"10.1007\/s12010-016-2302-6","volume":"181","author":"S Pamidipati","year":"2017","unstructured":"Pamidipati S, Ahmed A (2017) Degradation of lignin in agricultural residues by locally isolated fungus Neurospora discreta. Appl Biochem Biotechnol 181:1561\u20131572. https:\/\/doi.org\/10.1007\/s12010-016-2302-6","journal-title":"Appl Biochem Biotechnol"},{"key":"1855_CR110","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0077212","volume":"8","author":"A Koyama","year":"2013","unstructured":"Koyama A, Wallenstein MD, Simpson RT, Moore JC (2013) Carbon-degrading enzyme activities stimulated by increased nutrient availability in arctic tundra soils. PLoS ONE 8:e77212. https:\/\/doi.org\/10.1371\/journal.pone.0077212","journal-title":"PLoS ONE"},{"key":"1855_CR111","doi-asserted-by":"publisher","first-page":"215","DOI":"10.1007\/978-3-642-15271-9_9","volume-title":"Phosphorus in action","author":"P Nannipieri","year":"2011","unstructured":"Nannipieri P, Giagnoni L, Landi L, Renella G (2011) Role of phosphatase enzymes in soil. In: Bunemman EK, Oberson A, Frossard E (eds) Phosphorus in action. Springer, Berlin, pp 215\u2013243"},{"key":"1855_CR112","doi-asserted-by":"publisher","first-page":"55","DOI":"10.1007\/s00374-017-1238-5","volume":"54","author":"BS Mickan","year":"2018","unstructured":"Mickan BS, Abbott LK, Fan J, Hart MM, Siddique KH, Solaiman ZM, Jenkins SN (2018) Application of compost and clay under water-stressed conditions influences functional diversity of rhizosphere bacteria. Biol Fertil Soils 54:55\u201370. https:\/\/doi.org\/10.1007\/s00374-017-1238-5","journal-title":"Biol Fertil Soils"}],"container-title":["Microbial Ecology"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/link.springer.com\/content\/pdf\/10.1007\/s00248-021-01855-z.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/link.springer.com\/article\/10.1007\/s00248-021-01855-z\/fulltext.html","content-type":"text\/html","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/link.springer.com\/content\/pdf\/10.1007\/s00248-021-01855-z.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2022,9,1]],"date-time":"2022-09-01T10:11:35Z","timestamp":1662027095000},"score":1,"resource":{"primary":{"URL":"https:\/\/link.springer.com\/10.1007\/s00248-021-01855-z"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2021,9,9]]},"references-count":112,"journal-issue":{"issue":"2","published-print":{"date-parts":[[2022,8]]}},"alternative-id":["1855"],"URL":"https:\/\/doi.org\/10.1007\/s00248-021-01855-z","relation":{},"ISSN":["0095-3628","1432-184X"],"issn-type":[{"value":"0095-3628","type":"print"},{"value":"1432-184X","type":"electronic"}],"subject":[],"published":{"date-parts":[[2021,9,9]]},"assertion":[{"value":"14 May 2021","order":1,"name":"received","label":"Received","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"31 August 2021","order":2,"name":"accepted","label":"Accepted","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"9 September 2021","order":3,"name":"first_online","label":"First Online","group":{"name":"ArticleHistory","label":"Article History"}},{"order":1,"name":"Ethics","group":{"name":"EthicsHeading","label":"Declarations"}},{"value":"Not applicable.","order":2,"name":"Ethics","group":{"name":"EthicsHeading","label":"Ethics Approval"}},{"value":"The authors declare their consent to participate in the present work.","order":3,"name":"Ethics","group":{"name":"EthicsHeading","label":"Consent to Participate"}},{"value":"The authors declare their consent for the publication of the present work.","order":4,"name":"Ethics","group":{"name":"EthicsHeading","label":"Consent for Publication"}},{"value":"The authors declare no competing interests.","order":5,"name":"Ethics","group":{"name":"EthicsHeading","label":"Conflict of Interest"}}]}}