{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,10,6]],"date-time":"2026-10-06T19:20:06Z","timestamp":1791314406505,"version":"4.3.1"},"reference-count":118,"publisher":"Springer Science and Business Media LLC","issue":"3","license":[{"start":{"date-parts":[[2022,7,8]],"date-time":"2022-07-08T00:00:00Z","timestamp":1657238400000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/creativecommons.org\/licenses\/by\/4.0"},{"start":{"date-parts":[[2022,7,8]],"date-time":"2022-07-08T00:00:00Z","timestamp":1657238400000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/creativecommons.org\/licenses\/by\/4.0"}],"funder":[{"DOI":"10.13039\/100014576","name":"Office of the President, University of California","doi-asserted-by":"publisher","award":["CA-16-376437"],"award-info":[{"award-number":["CA-16-376437"]}],"id":[{"id":"10.13039\/100014576","id-type":"DOI","asserted-by":"publisher"}]},{"name":"La Kretz and Stunt Ranch Reserve Grant","award":["443952-SR-69085"],"award-info":[{"award-number":["443952-SR-69085"]}]}],"content-domain":{"domain":["link.springer.com"],"crossmark-restriction":false},"short-container-title":["Microb Ecol"],"published-print":{"date-parts":[[2023,4]]},"abstract":"<jats:title>Abstract<\/jats:title>\n                  <jats:p>\n                    Brownfields are unused sites that contain hazardous substances due to previous commercial or industrial use. The sites are inhospitable for many organisms, but some fungi and microbes can tolerate and thrive in the nutrient-depleted and contaminated soils. However, few studies have characterized the impacts of long-term contamination on soil microbiome composition and diversity at brownfields. This study focuses on an urban brownfield\u2014a former rail yard in Los Angeles that is contaminated with heavy metals, volatile organic compounds, and petroleum-derived pollutants. We anticipate that heavy metals and organic pollutants will shape soil microbiome diversity and that several candidate fungi and bacteria will be tolerant to the contaminants. We sequence three gene markers (16S ribosomal RNA, 18S ribosomal RNA, and the fungal internal transcribed spacer (FITS)) in 55 soil samples collected at five depths to (1) profile the composition of the soil microbiome across depths; (2) determine the extent to which hazardous chemicals predict microbiome variation; and (3) identify microbial taxonomic groups that may metabolize these contaminants. Detected contaminants in the samples included heavy metals, petroleum hydrocarbons, polycyclic aromatic hydrocarbons, and volatile organic compounds. Bacterial, eukaryotic, and fungal communities all varied with depth and with concentrations of arsenic, chromium, cobalt, and lead. 18S rRNA microbiome richness and fungal richness were positively correlated with lead and cobalt levels, respectively. Furthermore, bacterial\n                    <jats:italic>Paenibacillus<\/jats:italic>\n                    and\n                    <jats:italic>Iamia<\/jats:italic>\n                    , eukaryotic\n                    <jats:italic>Actinochloris<\/jats:italic>\n                    , and fungal\n                    <jats:italic>Alternaria<\/jats:italic>\n                    were enriched in contaminated soils compared to uncontaminated soils and represent taxa of interest for future bioremediation research. Based on our results, we recommend incorporating DNA-based multi-marker microbial community profiling at multiple sites and depths in brownfield site assessment standard methods and restoration.\n                  <\/jats:p>","DOI":"10.1007\/s00248-022-02061-1","type":"journal-article","created":{"date-parts":[[2022,7,8]],"date-time":"2022-07-08T01:02:21Z","timestamp":1657242141000},"page":"998-1012","update-policy":"https:\/\/doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":36,"title":["Soil Microbial Community Composition and Tolerance to Contaminants in an Urban Brownfield Site"],"prefix":"10.1007","volume":"85","author":[{"ORCID":"https:\/\/orcid.org\/0000-0003-3513-8416","authenticated-orcid":false,"given":"Maura Palacios","family":"Mejia","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-6097-8970","authenticated-orcid":false,"given":"Connie A.","family":"Rojas","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-0336-6852","authenticated-orcid":false,"given":"Emily","family":"Curd","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Mark A.","family":"Renshaw","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Kiumars","family":"Edalati","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Beverly","family":"Shih","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Nitin","family":"Vincent","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-5233-0675","authenticated-orcid":false,"given":"Meixi","family":"Lin","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-6611-9854","authenticated-orcid":false,"given":"Peggy H.","family":"Nguyen","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Robert","family":"Wayne","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Kelsey","family":"Jessup","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Sophie S.","family":"Parker","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"297","published-online":{"date-parts":[[2022,7,8]]},"reference":[{"key":"2061_CR1","unstructured":"US EPA O (2014) Overview of EPA\u2019s Brownfields Program. In: US EPA. https:\/\/www.epa.gov\/brownfields\/overview-epas-brownfields-program. Accessed 28 May 2021"},{"key":"2061_CR2","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1111\/sum.12212","volume":"31","author":"AS Gregory","year":"2015","unstructured":"Gregory AS, Ritz K, McGrath SP et al (2015) A review of the impacts of degradation threats on soil properties in the UK. Soil Use Manag 31:1\u201315. https:\/\/doi.org\/10.1111\/sum.12212","journal-title":"Soil Use Manag"},{"key":"2061_CR3","unstructured":"Jones P, Comfort D (2021) Ecosystem services and brownfield land. Town and Country Planning 90:344\u2013348. https:\/\/eprints.glos.ac.uk\/id\/eprint\/10343"},{"key":"2061_CR4","doi-asserted-by":"publisher","first-page":"29","DOI":"10.1016\/j.ecoser.2018.08.003","volume":"33","author":"BW Kolosz","year":"2018","unstructured":"Kolosz BW, Athanasiadis IN, Cadisch G et al (2018) Conceptual advancement of socio-ecological modelling of ecosystem services for re-evaluating brownfield land. Ecosyst Serv 33:29\u201339. https:\/\/doi.org\/10.1016\/j.ecoser.2018.08.003","journal-title":"Ecosyst Serv"},{"key":"2061_CR5","doi-asserted-by":"publisher","first-page":"150162","DOI":"10.1016\/j.scitotenv.2021.150162","volume":"804","author":"CJ Macgregor","year":"2022","unstructured":"Macgregor CJ, Bunting MJ, Deutz P et al (2022) Brownfield sites promote biodiversity at a landscape scale. Sci Total Environ 804:150162. https:\/\/doi.org\/10.1016\/j.scitotenv.2021.150162","journal-title":"Sci Total Environ"},{"key":"2061_CR6","doi-asserted-by":"publisher","first-page":"196","DOI":"10.1111\/ejss.12518","volume":"69","author":"G Li","year":"2018","unstructured":"Li G, Sun G-X, Ren Y et al (2018) Urban soil and human health: a review. Eur J Soil Sci 69:196\u2013215. https:\/\/doi.org\/10.1111\/ejss.12518","journal-title":"Eur J Soil Sci"},{"key":"2061_CR7","doi-asserted-by":"publisher","first-page":"e3968","DOI":"10.1002\/ecs2.3968","volume":"13","author":"A Nugent","year":"2022","unstructured":"Nugent A, Allison SD (2022) A framework for soil microbial ecology in urban ecosystems. Ecosphere 13:e3968. https:\/\/doi.org\/10.1002\/ecs2.3968","journal-title":"Ecosphere"},{"key":"2061_CR8","doi-asserted-by":"publisher","first-page":"313","DOI":"10.1016\/j.jenvman.2019.04.111","volume":"244","author":"JP Singh","year":"2019","unstructured":"Singh JP, Vaidya BP, Goodey NM, Krumins JA (2019) Soil microbial response to metal contamination in a vegetated and urban brownfield. J Environ Manage 244:313\u2013319. https:\/\/doi.org\/10.1016\/j.jenvman.2019.04.111","journal-title":"J Environ Manage"},{"key":"2061_CR9","doi-asserted-by":"publisher","first-page":"863","DOI":"10.1016\/j.chemosphere.2014.11.077","volume":"138","author":"M Rachwa\u0142","year":"2015","unstructured":"Rachwa\u0142 M, Magiera T, Wawer M (2015) Coke industry and steel metallurgy as the source of soil contamination by technogenic magnetic particles, heavy metals and polycyclic aromatic hydrocarbons. Chemosphere 138:863\u2013873. https:\/\/doi.org\/10.1016\/j.chemosphere.2014.11.077","journal-title":"Chemosphere"},{"key":"2061_CR10","doi-asserted-by":"publisher","first-page":"993","DOI":"10.1007\/s00248-018-1297-7","volume":"77","author":"F Lemmel","year":"2019","unstructured":"Lemmel F, Maunoury-Danger F, Fanesi A et al (2019) Soil properties and multi-pollution affect taxonomic and functional bacterial diversity in a range of French soils displaying an anthropisation gradient. Microb Ecol 77:993\u20131013. https:\/\/doi.org\/10.1007\/s00248-018-1297-7","journal-title":"Microb Ecol"},{"key":"2061_CR11","doi-asserted-by":"publisher","first-page":"1015","DOI":"10.1039\/C3EM00656E","volume":"16","author":"J Tang","year":"2014","unstructured":"Tang J, Feng J, Li X, Li G (2014) Levels of flame retardants HBCD, TBBPA and TBC in surface soils from an industrialized region of East China. Environ Sci Process Impacts 16:1015\u20131021. https:\/\/doi.org\/10.1039\/C3EM00656E","journal-title":"Environ Sci Process Impacts"},{"key":"2061_CR12","doi-asserted-by":"publisher","first-page":"1244","DOI":"10.1111\/1751-7915.12840","volume":"10","author":"M Megharaj","year":"2017","unstructured":"Megharaj M, Naidu R (2017) Soil and brownfield bioremediation. Microb Biotechnol 10:1244\u20131249. https:\/\/doi.org\/10.1111\/1751-7915.12840","journal-title":"Microb Biotechnol"},{"key":"2061_CR13","doi-asserted-by":"publisher","first-page":"284","DOI":"10.4028\/www.scientific.net\/AMR.414.284","volume":"414","author":"J Liu","year":"2012","unstructured":"Liu J, Yang J, Luo WJ et al (2012) Effect of heavy metals on brownfield quality in different industries. Adv Mater Res 414:284\u2013288. https:\/\/doi.org\/10.4028\/www.scientific.net\/AMR.414.284","journal-title":"Adv Mater Res"},{"key":"2061_CR14","doi-asserted-by":"publisher","first-page":"691","DOI":"10.1126\/science.344.6185.691-b","volume":"344","author":"H Yang","year":"2014","unstructured":"Yang H, Huang X, Thompson JR, Flower RJ (2014) Soil pollution: urban brownfields. Science 344:691\u2013692. https:\/\/doi.org\/10.1126\/science.344.6185.691-b","journal-title":"Science"},{"key":"2061_CR15","doi-asserted-by":"publisher","first-page":"17","DOI":"10.1016\/0147-619X(92)90003-S","volume":"27","author":"DH Nies","year":"1992","unstructured":"Nies DH (1992) Resistance to cadmium, cobalt, zinc, and nickel in microbes. Plasmid 27:17\u201328. https:\/\/doi.org\/10.1016\/0147-619X(92)90003-S","journal-title":"Plasmid"},{"key":"2061_CR16","first-page":"301","volume":"26","author":"RK Sharma","year":"2005","unstructured":"Sharma RK, Agrawal M (2005) Biological effects of heavy metals: an overview. J Environ Biol 26:301\u2013313","journal-title":"J Environ Biol"},{"key":"2061_CR17","doi-asserted-by":"publisher","first-page":"177","DOI":"10.1038\/nrmicro2519","volume":"9","author":"H Harms","year":"2011","unstructured":"Harms H, Schlosser D, Wick LY (2011) Untapped potential: exploiting fungi in bioremediation of hazardous chemicals. Nat Rev Microbiol 9:177\u2013192. https:\/\/doi.org\/10.1038\/nrmicro2519","journal-title":"Nat Rev Microbiol"},{"key":"2061_CR18","doi-asserted-by":"publisher","first-page":"58","DOI":"10.1016\/j.btre.2016.12.006","volume":"13","author":"P Gupta","year":"2017","unstructured":"Gupta P, Diwan B (2017) Bacterial exopolysaccharide mediated heavy metal removal: a review on biosynthesis, mechanism and remediation strategies. Biotechnol Rep 13:58\u201371. https:\/\/doi.org\/10.1016\/j.btre.2016.12.006","journal-title":"Biotechnol Rep"},{"key":"2061_CR19","doi-asserted-by":"publisher","first-page":"933","DOI":"10.3390\/ijms17060933","volume":"17","author":"H Azarbad","year":"2016","unstructured":"Azarbad H, Van Gestel CAM, Nikli\u0144ska M et al (2016) Resilience of soil microbial communities to metals and additional stressors: DNA-based approaches for assessing \u201cstress-on-stress\u201d responses. Int J Mol Sci 17:933. https:\/\/doi.org\/10.3390\/ijms17060933","journal-title":"Int J Mol Sci"},{"key":"2061_CR20","doi-asserted-by":"publisher","first-page":"730","DOI":"10.1007\/s002530051457","volume":"51","author":"DH Nies","year":"1999","unstructured":"Nies DH (1999) Microbial heavy-metal resistance. Appl Microbiol Biotechnol 51:730\u2013750. https:\/\/doi.org\/10.1007\/s002530051457","journal-title":"Appl Microbiol Biotechnol"},{"key":"2061_CR21","doi-asserted-by":"publisher","first-page":"114328","DOI":"10.1016\/j.envpol.2020.114328","volume":"262","author":"Y Wu","year":"2020","unstructured":"Wu Y, Wu J, Tan H et al (2020) Distributions of chlorinated paraffins and the effects on soil microbial community structure in a production plant brownfield site. Environ Pollut 262:114328. https:\/\/doi.org\/10.1016\/j.envpol.2020.114328","journal-title":"Environ Pollut"},{"key":"2061_CR22","doi-asserted-by":"publisher","first-page":"270","DOI":"10.1016\/j.jhazmat.2006.12.017","volume":"146","author":"S Congeevaram","year":"2007","unstructured":"Congeevaram S, Dhanarani S, Park J et al (2007) Biosorption of chromium and nickel by heavy metal resistant fungal and bacterial isolates. J Hazard Mater 146:270\u2013277. https:\/\/doi.org\/10.1016\/j.jhazmat.2006.12.017","journal-title":"J Hazard Mater"},{"key":"2061_CR23","doi-asserted-by":"publisher","first-page":"65","DOI":"10.1016\/j.ejar.2016.11.002","volume":"43","author":"LW Marzan","year":"2017","unstructured":"Marzan LW, Hossain M, Mina SA et al (2017) Isolation and biochemical characterization of heavy-metal resistant bacteria from tannery effluent in Chittagong city, Bangladesh: bioremediation viewpoint. Egypt J Aquat Res 43:65\u201374. https:\/\/doi.org\/10.1016\/j.ejar.2016.11.002","journal-title":"Egypt J Aquat Res"},{"key":"2061_CR24","unstructured":"Aganbi E, Medina AA, Fahy A et al (2014) The effect of an induced benzene plume on microbial communities in a groundwater aquifer. In: Proceedings of the 24th Annual International Conference on Water, Energy & Air, San Diego 1\u201319. http:\/\/repository.essex.ac.uk\/id\/eprint\/17151"},{"key":"2061_CR25","doi-asserted-by":"publisher","first-page":"687","DOI":"10.1007\/s10532-010-9429-x","volume":"22","author":"J Lee","year":"2011","unstructured":"Lee J, Lee TK, L\u00f6ffler FE, Park J (2011) Characterization of microbial community structure and population dynamics of tetrachloroethene-dechlorinating tidal mudflat communities. Biodegradation 22:687\u2013698. https:\/\/doi.org\/10.1007\/s10532-010-9429-x","journal-title":"Biodegradation"},{"key":"2061_CR26","first-page":"35","volume":"3","author":"L Ezzouhri","year":"2009","unstructured":"Ezzouhri L, Castro E, Moya M et al (2009) Heavy metal tolerance of filamentous fungi isolated from polluted sites in Tangier, Morocco. Afr J Microbiol Res 3:35\u201348","journal-title":"Afr J Microbiol Res"},{"key":"2061_CR27","doi-asserted-by":"publisher","DOI":"10.1080\/03067319.2021.1939023","author":"K Jenab","year":"2021","unstructured":"Jenab K, Moghimi H, Azin E (2021) Crude oil and pyrene degradation by halotolerant fungi Embellisia sp. KJ59 and Alternaria sp. KJ66 isolated from saline soils. Int J Environ Anal Chem. https:\/\/doi.org\/10.1080\/03067319.2021.1939023","journal-title":"Int J Environ Anal Chem"},{"key":"2061_CR28","doi-asserted-by":"publisher","first-page":"124296","DOI":"10.1016\/j.jhazmat.2020.124296","volume":"406","author":"F Lemmel","year":"2021","unstructured":"Lemmel F, Maunoury-Danger F, Leyval C, C\u00e9bron A (2021) Altered fungal communities in contaminated soils from French industrial brownfields. J Hazard Mater 406:124296. https:\/\/doi.org\/10.1016\/j.jhazmat.2020.124296","journal-title":"J Hazard Mater"},{"key":"2061_CR29","doi-asserted-by":"publisher","first-page":"129","DOI":"10.1111\/j.1540-6040.2006.00166.x","volume":"5","author":"AL Roth","year":"2006","unstructured":"Roth AL, Vander Haar EL (2006) Media standing of urban parkland movements: the case of Los Angeles\u2019 Taylor Yard, 1985\u20132001. City Community 5:129\u2013151. https:\/\/doi.org\/10.1111\/j.1540-6040.2006.00166.x","journal-title":"City Community"},{"key":"2061_CR30","unstructured":"Project Management Team\nBureau of Engineering (2020) Taylor Yard G2 Parcel 3rd Quarter \nStatus Report. City of Los Angeles, Los Angeles, CA. https:\/\/eng2.lacity.org\/sites\/g\/files\/wph726\/f\/Final%20Taylor%20Yard%20G2%20Status%20Report_January-March%202020.pdf"},{"key":"2061_CR31","volume-title":"Misapplication of TPH in fuel contamination remedial decisions","author":"BJ Marks","year":"1993","unstructured":"Marks BJ, McLaughlin PV, Manchon B (1993) Misapplication of TPH in fuel contamination remedial decisions. National Groundwater Association, Westerville"},{"key":"2061_CR32","doi-asserted-by":"publisher","first-page":"69","DOI":"10.1186\/s12915-014-0069-1","volume":"12","author":"JA Gilbert","year":"2014","unstructured":"Gilbert JA, Jansson JK, Knight R (2014) The Earth Microbiome project: successes and aspirations. BMC Biol 12:69. https:\/\/doi.org\/10.1186\/s12915-014-0069-1","journal-title":"BMC Biol"},{"key":"2061_CR33","doi-asserted-by":"publisher","first-page":"129","DOI":"10.3354\/ame01753","volume":"75","author":"A Apprill","year":"2015","unstructured":"Apprill A, McNally S, Parsons R, Weber L (2015) Minor revision to V4 region SSU rRNA 806R gene primer greatly increases detection of SAR11 bacterioplankton. Aquat Microb Ecol 75:129\u2013137. https:\/\/doi.org\/10.3354\/ame01753","journal-title":"Aquat Microb Ecol"},{"key":"2061_CR34","doi-asserted-by":"publisher","first-page":"21","DOI":"10.1111\/j.1365-294X.2009.04480.x","volume":"19","author":"T Stoeck","year":"2010","unstructured":"Stoeck T, Bass D, Nebel M et al (2010) Multiple marker parallel tag environmental DNA sequencing reveals a highly complex eukaryotic community in marine anoxic water. Mol Ecol 19:21\u201331. https:\/\/doi.org\/10.1111\/j.1365-294X.2009.04480.x","journal-title":"Mol Ecol"},{"key":"2061_CR35","doi-asserted-by":"publisher","first-page":"e6372","DOI":"10.1371\/journal.pone.0006372","volume":"4","author":"LA Amaral-Zettler","year":"2009","unstructured":"Amaral-Zettler LA, McCliment EA, Ducklow HW, Huse SM (2009) A method for studying protistan diversity using massively parallel sequencing of V9 hypervariable regions of small-subunit ribosomal RNA genes. PLoS ONE 4:e6372. https:\/\/doi.org\/10.1371\/journal.pone.0006372","journal-title":"PLoS ONE"},{"key":"2061_CR36","doi-asserted-by":"publisher","first-page":"1469","DOI":"10.1111\/2041-210X.13214","volume":"10","author":"EE Curd","year":"2019","unstructured":"Curd EE, Gold Z, Kandlikar GS et al (2019) Anacapa Toolkit: an environmental DNA toolkit for processing multilocus metabarcode datasets. Methods Ecol Evol 10:1469\u20131475. https:\/\/doi.org\/10.1111\/2041-210X.13214","journal-title":"Methods Ecol Evol"},{"key":"2061_CR37","doi-asserted-by":"publisher","first-page":"581","DOI":"10.1038\/nmeth.3869","volume":"13","author":"BJ Callahan","year":"2016","unstructured":"Callahan BJ, McMurdie PJ, Rosen MJ et al (2016) DADA2: high-resolution sample inference from Illumina amplicon data. Nat Methods 13:581\u2013583. https:\/\/doi.org\/10.1038\/nmeth.3869","journal-title":"Nat Methods"},{"key":"2061_CR38","doi-asserted-by":"publisher","first-page":"D67","DOI":"10.1093\/nar\/gkv1276","volume":"44","author":"K Clark","year":"2016","unstructured":"Clark K, Karsch-Mizrachi I, Lipman DJ et al (2016) GenBank. Nucleic Acids Res 44:D67\u2013D72. https:\/\/doi.org\/10.1093\/nar\/gkv1276","journal-title":"Nucleic Acids Res"},{"key":"2061_CR39","unstructured":"R Development Core Team (2019) R: a language and environment for statistical computing. R Foundation for Statistical Computing, Vienna, Austria.\nhttps:\/\/www.R-project.org\/"},{"key":"2061_CR40","doi-asserted-by":"publisher","first-page":"226","DOI":"10.1186\/s40168-018-0605-2","volume":"6","author":"NM Davis","year":"2018","unstructured":"Davis NM, Proctor DM, Holmes SP et al (2018) Simple statistical identification and removal of contaminant sequences in marker-gene and metagenomics data. Microbiome 6:226. https:\/\/doi.org\/10.1186\/s40168-018-0605-2","journal-title":"Microbiome"},{"key":"2061_CR41","doi-asserted-by":"publisher","DOI":"10.1007\/978-3-319-24277-4","volume-title":"ggplot2: elegant graphics for data analysis","author":"H Wickham","year":"2016","unstructured":"Wickham H (2016) ggplot2: elegant graphics for data analysis, 2nd edn. Springer, Berlin","edition":"2"},{"key":"2061_CR42","doi-asserted-by":"publisher","first-page":"e02343","DOI":"10.1128\/AEM.02343-19","volume":"86","author":"PD Schloss","year":"2020","unstructured":"Schloss PD (2020) Reintroducing mothur: 10 years later. Appl Environ Microbiol 86:e02343-e2419. https:\/\/doi.org\/10.1128\/AEM.02343-19","journal-title":"Appl Environ Microbiol"},{"key":"2061_CR43","doi-asserted-by":"publisher","first-page":"7537","DOI":"10.1128\/AEM.01541-09","volume":"75","author":"PD Schloss","year":"2009","unstructured":"Schloss PD, Westcott SL, Ryabin T et al (2009) Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities. Appl Environ Microbiol 75:7537\u20137541. https:\/\/doi.org\/10.1128\/AEM.01541-09","journal-title":"Appl Environ Microbiol"},{"key":"2061_CR44","first-page":"16","volume":"14","author":"MJ Vavrek","year":"2011","unstructured":"Vavrek MJ (2011) fossil: palaeoecological and palaeogeographical analysis tools. Palaeontol Electron 14:16","journal-title":"Palaeontol Electron"},{"key":"2061_CR45","doi-asserted-by":"publisher","first-page":"1","DOI":"10.18637\/jss.v067.i01","volume":"67","author":"D Bates","year":"2015","unstructured":"Bates D, M\u00e4chler M, Bolker B, Walker S (2015) Fitting linear mixed-effects models using lme4. J Stat Softw 67:1\u201348","journal-title":"J Stat Softw"},{"key":"2061_CR46","unstructured":"Benoit K (2011) Linear regression models with logarithmic transformations. London School of Economics, London 22:23\u201336. https:\/\/kenbenoit.net\/assets\/courses\/ME104\/logmodels2.pdf"},{"key":"2061_CR47","volume-title":"An R companion to applied regression","author":"J Fox","year":"2019","unstructured":"Fox J, Weisberg S (2019) An R companion to applied regression, 3rd edn. Sage, Newbury Park","edition":"3"},{"key":"2061_CR48","unstructured":"Oksanen J, Blanchet FG, Friendly M, Kindt R, Legendre P, McGlinn D et al (2020) vegan: Community Ecology Package. R package version 2.5-7. https:\/\/CRAN.R-project.org\/package=vegan"},{"key":"2061_CR49","doi-asserted-by":"publisher","first-page":"R60","DOI":"10.1186\/gb-2011-12-6-r60","volume":"12","author":"N Segata","year":"2011","unstructured":"Segata N, Izard J, Waldron L et al (2011) Metagenomic biomarker discovery and explanation. Genome Biol 12:R60. https:\/\/doi.org\/10.1186\/gb-2011-12-6-r60","journal-title":"Genome Biol"},{"key":"2061_CR50","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1007\/s11368-020-02743-8","volume":"21","author":"X-T Bai","year":"2021","unstructured":"Bai X-T, Wang J, Dong H et al (2021) Relative importance of soil properties and heavy metals\/metalloids to modulate microbial community and activity at a smelting site. J Soils Sediments 21:1\u201312. https:\/\/doi.org\/10.1007\/s11368-020-02743-8","journal-title":"J Soils Sediments"},{"key":"2061_CR51","unstructured":"Chodak M, Golebiewski M, Morawska-P\u0142oskonka J et al (2013) The effect of drought on the structure and diversity of bacterial communities in forest soils differently polluted with heavy metals. EGU General Assembly 15. https:\/\/ui.adsabs.harvard.edu\/abs\/2013EGUGA..15.7278C\/abstract"},{"key":"2061_CR52","doi-asserted-by":"publisher","first-page":"116639","DOI":"10.1016\/j.envpol.2021.116639","volume":"275","author":"C Wang","year":"2021","unstructured":"Wang C, Wang Y, Liu P et al (2021) Characteristics of bacterial community structure and function associated with nutrients and heavy metals in coastal aquaculture area. Environ Pollut 275:116639. https:\/\/doi.org\/10.1016\/j.envpol.2021.116639","journal-title":"Environ Pollut"},{"key":"2061_CR53","doi-asserted-by":"publisher","first-page":"125727","DOI":"10.1016\/j.jhazmat.2021.125727","volume":"415","author":"D Li","year":"2021","unstructured":"Li D, Li G, Zhang D (2021) Field-scale studies on the change of soil microbial community structure and functions after stabilization at a chromium-contaminated site. J Hazard Mater 415:125727. https:\/\/doi.org\/10.1016\/j.jhazmat.2021.125727","journal-title":"J Hazard Mater"},{"key":"2061_CR54","doi-asserted-by":"publisher","first-page":"450","DOI":"10.1016\/j.ecoenv.2018.10.114","volume":"168","author":"JP Singh","year":"2019","unstructured":"Singh JP, Ojinnaka EU, Krumins JA, Goodey NM (2019) Abiotic factors determine functional outcomes of microbial inoculation of soils from a metal contaminated brownfield. Ecotoxicol Environ Saf 168:450\u2013456. https:\/\/doi.org\/10.1016\/j.ecoenv.2018.10.114","journal-title":"Ecotoxicol Environ Saf"},{"key":"2061_CR55","doi-asserted-by":"publisher","first-page":"131899","DOI":"10.1016\/j.chemosphere.2021.131899","volume":"286","author":"A Kavehei","year":"2022","unstructured":"Kavehei A, Gore DB, Chariton AA, Hose GC (2022) Characterizing the spatial distributions of soil biota at a legacy base metal mine using environmental DNA. Chemosphere 286:131899. https:\/\/doi.org\/10.1016\/j.chemosphere.2021.131899","journal-title":"Chemosphere"},{"key":"2061_CR56","doi-asserted-by":"publisher","first-page":"1528","DOI":"10.1080\/10643389.2017.1386951","volume":"47","author":"S Ye","year":"2017","unstructured":"Ye S, Zeng G, Wu H et al (2017) Co-occurrence and interactions of pollutants, and their impacts on soil remediation\u2014a review. Crit Rev Environ Sci Technol 47:1528\u20131553. https:\/\/doi.org\/10.1080\/10643389.2017.1386951","journal-title":"Crit Rev Environ Sci Technol"},{"key":"2061_CR57","doi-asserted-by":"publisher","first-page":"785","DOI":"10.1016\/j.scitotenv.2016.01.170","volume":"557\u2013558","author":"C Zhang","year":"2016","unstructured":"Zhang C, Nie S, Liang J et al (2016) Effects of heavy metals and soil physicochemical properties on wetland soil microbial biomass and bacterial community structure. Sci Total Environ 557\u2013558:785\u2013790. https:\/\/doi.org\/10.1016\/j.scitotenv.2016.01.170","journal-title":"Sci Total Environ"},{"key":"2061_CR58","doi-asserted-by":"publisher","unstructured":"Dusengemungu L, Kasali G, Gwanama C, Ouma KO (2020) Recent advances in biosorption of copper and cobalt by filamentous fungi.\u00a0Front Microbiol 11. https:\/\/doi.org\/10.3389\/fmicb.2020.582016","DOI":"10.3389\/fmicb.2020.582016"},{"key":"2061_CR59","doi-asserted-by":"publisher","first-page":"164","DOI":"10.1007\/BF01569899","volume":"14","author":"M Joho","year":"1995","unstructured":"Joho M, Inouhe M, Tohoyama H, Murayama T (1995) Nickel resistance mechanisms in yeasts and other fungi. J Ind Microbiol 14:164\u2013168. https:\/\/doi.org\/10.1007\/BF01569899","journal-title":"J Ind Microbiol"},{"key":"2061_CR60","doi-asserted-by":"publisher","first-page":"71","DOI":"10.1007\/BF00336448","volume":"18","author":"RD Bardgett","year":"1994","unstructured":"Bardgett RD, Speir TW, Ross DJ et al (1994) Impact of pasture contamination by copper, chromium, and arsenic timber preservative on soil microbial properties and nematodes. Biol Fertil Soils 18:71\u201379. https:\/\/doi.org\/10.1007\/BF00336448","journal-title":"Biol Fertil Soils"},{"key":"2061_CR61","doi-asserted-by":"publisher","first-page":"1591","DOI":"10.1016\/j.scitotenv.2018.07.095","volume":"644","author":"Y Chen","year":"2018","unstructured":"Chen Y, Ding Q, Chao Y et al (2018) Structural development and assembly patterns of the root-associated microbiomes during phytoremediation. Sci Total Environ 644:1591\u20131601. https:\/\/doi.org\/10.1016\/j.scitotenv.2018.07.095","journal-title":"Sci Total Environ"},{"key":"2061_CR62","doi-asserted-by":"publisher","first-page":"209","DOI":"10.1007\/s00248-005-0205-0","volume":"51","author":"J Joynt","year":"2006","unstructured":"Joynt J, Bischoff M, Turco R et al (2006) Microbial community analysis of soils contaminated with lead, chromium and petroleum hydrocarbons. Microb Ecol 51:209\u2013219. https:\/\/doi.org\/10.1007\/s00248-005-0205-0","journal-title":"Microb Ecol"},{"key":"2061_CR63","doi-asserted-by":"publisher","first-page":"299","DOI":"10.1007\/BF00335958","volume":"23","author":"F Kandeler","year":"1996","unstructured":"Kandeler F, Kampichler C, Horak O (1996) Influence of heavy metals on the functional diversity of soil microbial communities. Biol Fertil Soils 23:299\u2013306. https:\/\/doi.org\/10.1007\/BF00335958","journal-title":"Biol Fertil Soils"},{"key":"2061_CR64","doi-asserted-by":"publisher","first-page":"1430","DOI":"10.1016\/j.soilbio.2005.10.020","volume":"38","author":"N Lorenz","year":"2006","unstructured":"Lorenz N, Hintemann T, Kramarewa T et al (2006) Response of microbial activity and microbial community composition in soils to long-term arsenic and cadmium exposure. Soil Biol Biochem 38:1430\u20131437. https:\/\/doi.org\/10.1016\/j.soilbio.2005.10.020","journal-title":"Soil Biol Biochem"},{"key":"2061_CR65","doi-asserted-by":"publisher","first-page":"45","DOI":"10.1186\/s12915-019-0661-5","volume":"17","author":"TK Dunivin","year":"2019","unstructured":"Dunivin TK, Yeh SY, Shade A (2019) A global survey of arsenic-related genes in soil microbiomes. BMC Biol 17:45. https:\/\/doi.org\/10.1186\/s12915-019-0661-5","journal-title":"BMC Biol"},{"key":"2061_CR66","doi-asserted-by":"publisher","first-page":"4","DOI":"10.1186\/1471-2180-9-4","volume":"9","author":"L Cai","year":"2009","unstructured":"Cai L, Liu G, Rensing C, Wang G (2009) Genes involved in arsenic transformation and resistance associated with different levels of arsenic-contaminated soils. BMC Microbiol 9:4. https:\/\/doi.org\/10.1186\/1471-2180-9-4","journal-title":"BMC Microbiol"},{"key":"2061_CR67","doi-asserted-by":"publisher","first-page":"1190","DOI":"10.1111\/ejss.12979","volume":"72","author":"M Navas","year":"2021","unstructured":"Navas M, P\u00e9rez-Esteban J, Torres M-A et al (2021) Taxonomic and functional analysis of soil microbial communities in a mining site across a metal(loid) contamination gradient. Eur J Soil Sci 72:1190\u20131205. https:\/\/doi.org\/10.1111\/ejss.12979","journal-title":"Eur J Soil Sci"},{"key":"2061_CR68","doi-asserted-by":"publisher","first-page":"1197","DOI":"10.1016\/j.funbio.2011.08.005","volume":"115","author":"MCA del Gonz\u00e1lez-Ch\u00e1vez","year":"2011","unstructured":"del Gonz\u00e1lez-Ch\u00e1vez MCA, del Ortega-Larrocea MP, Carrillo-Gonz\u00e1lez R et al (2011) Arsenate induces the expression of fungal genes involved in As transport in arbuscular mycorrhiza. Fungal Biol 115:1197\u20131209. https:\/\/doi.org\/10.1016\/j.funbio.2011.08.005","journal-title":"Fungal Biol"},{"key":"2061_CR69","doi-asserted-by":"publisher","first-page":"141555","DOI":"10.1016\/j.scitotenv.2020.141555","volume":"749","author":"C Li","year":"2020","unstructured":"Li C, Quan Q, Gan Y et al (2020) Effects of heavy metals on microbial communities in sediments and establishment of bioindicators based on microbial taxa and function for environmental monitoring and management. Sci Total Environ 749:141555. https:\/\/doi.org\/10.1016\/j.scitotenv.2020.141555","journal-title":"Sci Total Environ"},{"key":"2061_CR70","doi-asserted-by":"publisher","first-page":"436","DOI":"10.1016\/j.scitotenv.2017.06.159","volume":"605\u2013606","author":"AR Schneider","year":"2017","unstructured":"Schneider AR, Gommeaux M, Duclercq J et al (2017) Response of bacterial communities to Pb smelter pollution in contrasting soils. Sci Total Environ 605\u2013606:436\u2013444. https:\/\/doi.org\/10.1016\/j.scitotenv.2017.06.159","journal-title":"Sci Total Environ"},{"key":"2061_CR71","doi-asserted-by":"publisher","first-page":"589","DOI":"10.1016\/j.envpol.2017.08.053","volume":"231","author":"VA Sheeba","year":"2017","unstructured":"Sheeba VA, Abdulaziz A, Gireeshkumar TR et al (2017) Role of heavy metals in structuring the microbial community associated with particulate matter in a tropical estuary. Environ Pollut 231:589\u2013600. https:\/\/doi.org\/10.1016\/j.envpol.2017.08.053","journal-title":"Environ Pollut"},{"key":"2061_CR72","doi-asserted-by":"publisher","first-page":"196","DOI":"10.3316\/informit.216702437346886","volume":"4","author":"AHM Kamal","year":"2010","unstructured":"Kamal AHM, Kim K-H, Shin K-H et al (2010) Abiotic stress responsive proteins of wheat grain determined using proteomics technique. Aust J Crop Sci 4:196\u2013208. https:\/\/doi.org\/10.3316\/informit.216702437346886","journal-title":"Aust J Crop Sci"},{"key":"2061_CR73","doi-asserted-by":"publisher","first-page":"39","DOI":"10.1111\/j.1574-6968.1985.tb01181.x","volume":"1","author":"JT Trevors","year":"1985","unstructured":"Trevors JT, Oddie KM, Belliveau BH (1985) Metal resistance in bacteria. FEMS Microbiol Rev 1:39\u201354. https:\/\/doi.org\/10.1111\/j.1574-6968.1985.tb01181.x","journal-title":"FEMS Microbiol Rev"},{"key":"2061_CR74","doi-asserted-by":"publisher","DOI":"10.1007\/s00248-021-01945-y","author":"JR Balacco","year":"2022","unstructured":"Balacco JR, Vaidya BP, Hagmann DF et al (2022) Mycorrhizal infection can ameliorate abiotic factors in urban soils. Microb Ecol. https:\/\/doi.org\/10.1007\/s00248-021-01945-y","journal-title":"Microb Ecol"},{"key":"2061_CR75","doi-asserted-by":"publisher","first-page":"192","DOI":"10.1631\/jzus.2007.B0192","volume":"8","author":"Y Jing","year":"2007","unstructured":"Jing Y, He Z, Yang X (2007) Role of soil rhizobacteria in phytoremediation of heavy metal contaminated soils. J Zhejiang Univ Sci B 8:192\u2013207. https:\/\/doi.org\/10.1631\/jzus.2007.B0192","journal-title":"J Zhejiang Univ Sci B"},{"key":"2061_CR76","doi-asserted-by":"publisher","first-page":"1018","DOI":"10.1016\/j.biortech.2005.04.046","volume":"97","author":"P Anand","year":"2006","unstructured":"Anand P, Isar J, Saran S, Saxena RK (2006) Bioaccumulation of copper by Trichoderma viride. Bioresour Technol 97:1018\u20131025. https:\/\/doi.org\/10.1016\/j.biortech.2005.04.046","journal-title":"Bioresour Technol"},{"key":"2061_CR77","doi-asserted-by":"publisher","first-page":"824","DOI":"10.1016\/S1001-0742(10)60475-5","volume":"23","author":"NL Iskandar","year":"2011","unstructured":"Iskandar NL, Zainudin NAIM, Tan SG (2011) Tolerance and biosorption of copper (Cu) and lead (Pb) by filamentous fungi isolated from a freshwater ecosystem. J Environ Sci 23:824\u2013830. https:\/\/doi.org\/10.1016\/S1001-0742(10)60475-5","journal-title":"J Environ Sci"},{"key":"2061_CR78","doi-asserted-by":"publisher","first-page":"115667","DOI":"10.1016\/j.envpol.2020.115667","volume":"273","author":"J Liu","year":"2021","unstructured":"Liu J, Yao J, Zhu X et al (2021) Metagenomic exploration of multi-resistance genes linked to microbial attributes in active nonferrous metal(loid) tailings. Environ Pollut 273:115667. https:\/\/doi.org\/10.1016\/j.envpol.2020.115667","journal-title":"Environ Pollut"},{"key":"2061_CR79","doi-asserted-by":"publisher","first-page":"1528","DOI":"10.1016\/j.ijbiomac.2021.05.111","volume":"182","author":"W Zhang","year":"2021","unstructured":"Zhang W, Ma J, Yan Q et al (2021) Biochemical characterization of a novel acidic chitinase with antifungal activity from Paenibacillus xylanexedens Z2\u20134. Int J Biol Macromol 182:1528\u20131536. https:\/\/doi.org\/10.1016\/j.ijbiomac.2021.05.111","journal-title":"Int J Biol Macromol"},{"key":"2061_CR80","doi-asserted-by":"publisher","first-page":"67","DOI":"10.1016\/j.envpol.2007.03.004","volume":"151","author":"T Chen","year":"2008","unstructured":"Chen T, Liu X, Zhu M et al (2008) Identification of trace element sources and associated risk assessment in vegetable soils of the urban\u2013rural transitional area of Hangzhou, China. Environ Pollut 151:67\u201378. https:\/\/doi.org\/10.1016\/j.envpol.2007.03.004","journal-title":"Environ Pollut"},{"key":"2061_CR81","doi-asserted-by":"publisher","first-page":"66","DOI":"10.1080\/10889868.2012.665959","volume":"16","author":"M Rawat","year":"2012","unstructured":"Rawat M, Rai JPN (2012) Adsorption of heavy metals by Paenibacillus validus strain MP5 isolated from industrial effluent\u2013polluted soil. Bioremediation J 16:66\u201373. https:\/\/doi.org\/10.1080\/10889868.2012.665959","journal-title":"Bioremediation J"},{"key":"2061_CR82","doi-asserted-by":"publisher","first-page":"1048","DOI":"10.1080\/15226514.2020.1725871","volume":"22","author":"A Banerjee","year":"2020","unstructured":"Banerjee A, Hazra A, Das S, Sengupta C (2020) Groundwater inhabited Bacillus and Paenibacillus strains alleviate arsenic-induced phytotoxicity of rice plant. Int J Phytoremediation 22:1048\u20131058. https:\/\/doi.org\/10.1080\/15226514.2020.1725871","journal-title":"Int J Phytoremediation"},{"key":"2061_CR83","first-page":"93","volume":"3","author":"MT Shaaban","year":"2015","unstructured":"Shaaban MT, Ibrahim HAH, Abouhend AS, El-Moselhy KM (2015) Removal of heavy metals from aqueous solutions using multi-metals and antibiotics resistant bacterium isolated from the Red Sea. Egypt Am J Microbiol Res 3:93\u2013106","journal-title":"Egypt Am J Microbiol Res"},{"key":"2061_CR84","doi-asserted-by":"publisher","first-page":"14258","DOI":"10.1021\/acs.est.1c03608","volume":"55","author":"X Zhang","year":"2021","unstructured":"Zhang X, Guo Y, Liu G et al (2021) Dark reduction of mercury by microalgae-associated aerobic bacteria in marine environments. Environ Sci Technol 55:14258\u201314268. https:\/\/doi.org\/10.1021\/acs.est.1c03608","journal-title":"Environ Sci Technol"},{"key":"2061_CR85","doi-asserted-by":"publisher","first-page":"352","DOI":"10.1016\/j.micres.2007.05.005","volume":"164","author":"J Selvin","year":"2009","unstructured":"Selvin J, Shanmugha Priya S, Seghal Kiran G et al (2009) Sponge-associated marine bacteria as indicators of heavy metal pollution. Microbiol Res 164:352\u2013363. https:\/\/doi.org\/10.1016\/j.micres.2007.05.005","journal-title":"Microbiol Res"},{"key":"2061_CR86","doi-asserted-by":"publisher","first-page":"2829","DOI":"10.1111\/1462-2920.12143","volume":"15","author":"F Lehembre","year":"2013","unstructured":"Lehembre F, Doillon D, David E et al (2013) Soil metatranscriptomics for mining eukaryotic heavy metal resistance genes. Environ Microbiol 15:2829\u20132840. https:\/\/doi.org\/10.1111\/1462-2920.12143","journal-title":"Environ Microbiol"},{"key":"2061_CR87","doi-asserted-by":"publisher","first-page":"506","DOI":"10.1139\/f82-069","volume":"39","author":"T Bistricki","year":"1982","unstructured":"Bistricki T, Munawar M (1982) Application of X-ray microanalysis for the detection of heavy metals in Great Lakes algae. Can J Fish Aquat Sci 39:506\u2013509. https:\/\/doi.org\/10.1139\/f82-069","journal-title":"Can J Fish Aquat Sci"},{"key":"2061_CR88","doi-asserted-by":"publisher","first-page":"1467","DOI":"10.1016\/S0038-0717(99)00060-7","volume":"31","author":"JJ Kelly","year":"1999","unstructured":"Kelly JJ, Ha\u00c8ggblom M, Tate RL III (1999) Effects of the land application of sewage sludge on soil heavy metal concentrations and soil microbial communities. Soil Biol Biochem 31:1467\u20131470","journal-title":"Soil Biol Biochem"},{"key":"2061_CR89","doi-asserted-by":"publisher","first-page":"76","DOI":"10.1007\/BF01970038","volume":"12","author":"A Nakajima","year":"1981","unstructured":"Nakajima A, Horikoshi T, Sakaguchi T (1981) Studies on the accumulation of heavy metal elements in biological systems. Eur J Appl Microbiol Biotechnol 12:76\u201383. https:\/\/doi.org\/10.1007\/BF01970038","journal-title":"Eur J Appl Microbiol Biotechnol"},{"key":"2061_CR90","doi-asserted-by":"publisher","first-page":"99","DOI":"10.1111\/j.1469-185X.1981.tb00345.x","volume":"56","author":"LC Rai","year":"1981","unstructured":"Rai LC, Gaur JP, Kumar HD (1981) Phycology and heavy-metal pollution. Biol Rev 56:99\u2013151. https:\/\/doi.org\/10.1111\/j.1469-185X.1981.tb00345.x","journal-title":"Biol Rev"},{"key":"2061_CR91","unstructured":"Uzunov B, Gartner G, Stoyneva M, Inolic E (2010) First record of coenocytic coccal green soil algae in Bulgaria. Environmental engineering and environmental protection 1:53\u201357. https:\/\/www.researchgate.net\/publication\/278847565_FIRST_RECORD_OF_COENOCYTIC_COCCAL_GREEN_SOIL_ALGAE_IN_BULGARIA"},{"key":"2061_CR92","doi-asserted-by":"publisher","first-page":"836","DOI":"10.2478\/s11756-008-0109-9","volume":"63","author":"IV Novakovskaya","year":"2008","unstructured":"Novakovskaya IV, Patova EN (2008) Green algae in spruce forests in the north-east of European Russia. Biologia (Bratisl) 63:836\u2013842. https:\/\/doi.org\/10.2478\/s11756-008-0109-9","journal-title":"Biologia (Bratisl)"},{"key":"2061_CR93","doi-asserted-by":"publisher","first-page":"1667","DOI":"10.3390\/microorganisms8111667","volume":"8","author":"V Sommer","year":"2020","unstructured":"Sommer V, Mikhailyuk T, Glaser K, Karsten U (2020) Uncovering unique green algae and cyanobacteria isolated from biocrusts in highly saline potash tailing pile habitats, using an integrative approach. Microorganisms 8:1667. https:\/\/doi.org\/10.3390\/microorganisms8111667","journal-title":"Microorganisms"},{"key":"2061_CR94","doi-asserted-by":"publisher","DOI":"10.1007\/BF00171570","author":"J-F Carrias","year":"1996","unstructured":"Carrias J-F, Amblard C, Bourdier G (1996) Protistan bacterivory in an oligomesotrophic lake: importance of attached ciliates and flagellates. Microb Ecol. https:\/\/doi.org\/10.1007\/BF00171570","journal-title":"Microb Ecol"},{"key":"2061_CR95","doi-asserted-by":"publisher","first-page":"501","DOI":"10.1016\/S0045-6535(96)00389-X","volume":"34","author":"CD Campbell","year":"1997","unstructured":"Campbell CD, Warren A, Cameron CM, Hope SJ (1997) Direct toxicity assessment of two soils amended with sewage sludge contaminated with heavy metals using a protozoan (Colpoda steinii) bioassay. Chemosphere 34:501\u2013514. https:\/\/doi.org\/10.1016\/S0045-6535(96)00389-X","journal-title":"Chemosphere"},{"key":"2061_CR96","doi-asserted-by":"publisher","first-page":"41","DOI":"10.2323\/jgam.29.41","volume":"29","author":"A Rogerson","year":"1983","unstructured":"Rogerson A, Berger J (1983) Enhancement of the microbial degradation of crude oil by the ciliate Colpidium colpoda. J Gen Appl Microbiol 29:41\u201350. https:\/\/doi.org\/10.2323\/jgam.29.41","journal-title":"J Gen Appl Microbiol"},{"key":"2061_CR97","doi-asserted-by":"publisher","first-page":"521","DOI":"10.1007\/978-3-662-08897-5_23","volume-title":"Mycorrhiza: structure, function, molecular biology and biotechnology","author":"JM Barea","year":"1995","unstructured":"Barea JM, Jeffries P (1995) Arbuscular mycorrhizas in sustainable soil-plant systems. In: Varma A, Hock B (eds) Mycorrhiza: structure, function, molecular biology and biotechnology. Springer, Berlin, pp 521\u2013560"},{"key":"2061_CR98","doi-asserted-by":"publisher","first-page":"1242","DOI":"10.1111\/j.1462-2920.2003.00463.x","volume":"5","author":"D C\u00e1novas","year":"2003","unstructured":"C\u00e1novas D, Cases I, Lorenzo VD (2003) Heavy metal tolerance and metal homeostasis in Pseudomonas putida as revealed by complete genome analysis. Environ Microbiol 5:1242\u20131256. https:\/\/doi.org\/10.1111\/j.1462-2920.2003.00463.x","journal-title":"Environ Microbiol"},{"key":"2061_CR99","first-page":"521","volume-title":"Process metallurgy","author":"C Dur\u00e1n","year":"1999","unstructured":"Dur\u00e1n C, Mar\u00edn I, Amils R (1999) Specific metal sequestering acidophilic fungi. In: Amils R, Ballester A (eds) Process metallurgy. Elsevier, pp 521\u2013530"},{"key":"2061_CR100","unstructured":"Verma J, Bhatt A, Agrawal PK (2016) In-vitro study on bioaccumulation and tolerance of heavy metals by endophytic fungi Alternaria alternata isolated from Cupressus torulosa D.DON. Oct Jour Env Res 4:146\u2013154"},{"key":"2061_CR101","doi-asserted-by":"publisher","first-page":"160","DOI":"10.3390\/microorganisms9010160","volume":"9","author":"M Novak Babi\u010d","year":"2021","unstructured":"Novak Babi\u010d M, Gunde-Cimerman N (2021) Water-transmitted fungi are involved in degradation of concrete drinking water storage tanks. Microorganisms 9:160. https:\/\/doi.org\/10.3390\/microorganisms9010160","journal-title":"Microorganisms"},{"key":"2061_CR102","doi-asserted-by":"publisher","first-page":"693","DOI":"10.1007\/s11557-012-0878-y","volume":"12","author":"C-Y Jie","year":"2013","unstructured":"Jie C-Y, Geng K, Jiang Y-L et al (2013) Stachybotrys from soil in China, identified by morphology and molecular phylogeny. Mycol Prog 12:693\u2013698. https:\/\/doi.org\/10.1007\/s11557-012-0878-y","journal-title":"Mycol Prog"},{"key":"2061_CR103","first-page":"1003","volume":"4","author":"MA Hefnawy","year":"2010","unstructured":"Hefnawy MA, Ali MI, Abdul-Ghany S (2010) Influence of copper and cobalt stress on membrane fluidity of Stachybotrys chartarum. Can J Pure Appl Sci 4:1003\u20131009","journal-title":"Can J Pure Appl Sci"},{"key":"2061_CR104","doi-asserted-by":"publisher","first-page":"2738","DOI":"10.1038\/s41467-018-05122-7","volume":"9","author":"L Hu","year":"2018","unstructured":"Hu L, Robert CAM, Cadot S et al (2018) Root exudate metabolites drive plant-soil feedbacks on growth and defense by shaping the rhizosphere microbiota. Nat Commun 9:2738. https:\/\/doi.org\/10.1038\/s41467-018-05122-7","journal-title":"Nat Commun"},{"key":"2061_CR105","doi-asserted-by":"publisher","first-page":"2853","DOI":"10.1038\/s41396-021-00960-8","volume":"15","author":"Z Hua","year":"2021","unstructured":"Hua Z, Ouellette M, Makkay AM et al (2021) Nutrient supplementation experiments with saltern microbial communities implicate utilization of DNA as a source of phosphorus. ISME J 15:2853\u20132864. https:\/\/doi.org\/10.1038\/s41396-021-00960-8","journal-title":"ISME J"},{"key":"2061_CR106","doi-asserted-by":"publisher","first-page":"9","DOI":"10.1016\/j.ecoenv.2012.10.031","volume":"88","author":"L Jin","year":"2013","unstructured":"Jin L, Son Y, Yoon TK et al (2013) High concentrations of single-walled carbon nanotubes lower soil enzyme activity and microbial biomass. Ecotoxicol Environ Saf 88:9\u201315. https:\/\/doi.org\/10.1016\/j.ecoenv.2012.10.031","journal-title":"Ecotoxicol Environ Saf"},{"key":"2061_CR107","doi-asserted-by":"publisher","first-page":"821","DOI":"10.1016\/j.envint.2007.10.006","volume":"34","author":"J G\u00e1l","year":"2008","unstructured":"G\u00e1l J, Hursthouse A, Tatner P et al (2008) Cobalt and secondary poisoning in the terrestrial food chain: data review and research gaps to support risk assessment. Environ Int 34:821\u2013838. https:\/\/doi.org\/10.1016\/j.envint.2007.10.006","journal-title":"Environ Int"},{"key":"2061_CR108","doi-asserted-by":"publisher","DOI":"10.1007\/s13225-021-00472-y","author":"P Baldrian","year":"2021","unstructured":"Baldrian P, V\u011btrovsk\u00fd T, Lepinay C, Kohout P (2021) High-throughput sequencing view on the magnitude of global fungal diversity. Fungal Divers. https:\/\/doi.org\/10.1007\/s13225-021-00472-y","journal-title":"Fungal Divers"},{"key":"2061_CR109","doi-asserted-by":"publisher","first-page":"554","DOI":"10.1126\/science.1107851","volume":"308","author":"SG Tringe","year":"2005","unstructured":"Tringe SG, von Mering C, Kobayashi A et al (2005) Comparative metagenomics of microbial communities. Science 308:554\u2013557. https:\/\/doi.org\/10.1126\/science.1107851","journal-title":"Science"},{"key":"2061_CR110","doi-asserted-by":"publisher","first-page":"559","DOI":"10.1177\/10780870022184534","volume":"35","author":"AO Bowman","year":"2000","unstructured":"Bowman AO, Pagano MA (2000) Transforming America\u2019s cities: policies and conditions of vacant land. Urban Aff Rev 35:559\u2013581. https:\/\/doi.org\/10.1177\/10780870022184534","journal-title":"Urban Aff Rev"},{"key":"2061_CR111","doi-asserted-by":"publisher","first-page":"45","DOI":"10.3390\/urbansci3020045","volume":"3","author":"F Cappai","year":"2019","unstructured":"Cappai F, Forgues D, Glaus M (2019) A methodological approach for evaluating brownfield redevelopment projects. Urban Sci 3:45. https:\/\/doi.org\/10.3390\/urbansci3020045","journal-title":"Urban Sci"},{"key":"2061_CR112","unstructured":"US EPA O (2019) Brownfields Program environmental and economic benefits. In: US EPA. https:\/\/www.epa.gov\/brownfields\/brownfields-program-environmental-and-economic-benefits. Accessed 14 Jun 2021"},{"key":"2061_CR113","unstructured":"Bressler AJ, Hannah JA (2000) Brownfield redevelopment: a risk versus reward. https:\/\/www.irmi.com\/articles\/expert-commentary\/brownfield-redevelopment-a-risk-versus-reward-proposition. Accessed 17 Oct 2021"},{"key":"2061_CR114","doi-asserted-by":"publisher","first-page":"82","DOI":"10.1016\/j.baae.2021.02.010","volume":"52","author":"VH Klaus","year":"2021","unstructured":"Klaus VH, Kiehl K (2021) A conceptual framework for urban ecological restoration and rehabilitation. Basic Appl Ecol 52:82\u201394. https:\/\/doi.org\/10.1016\/j.baae.2021.02.010","journal-title":"Basic Appl Ecol"},{"key":"2061_CR115","unstructured":"EPA (2008) Green remediation: incorporating sustainable environmental practices into remediation of contaminated sites. US Environmental Protection Agency Office of Solid Waste Emergency Response 9\u201356. https:\/\/nepis.epa.gov\/Exe\/ZyPURL.cgi?Dockey=P1000NZ3.txt"},{"key":"2061_CR116","doi-asserted-by":"publisher","first-page":"e00452","DOI":"10.1016\/j.btre.2020.e00452","volume":"26","author":"N Akhtar","year":"2020","unstructured":"Akhtar N, Mannan MA-U (2020) Mycoremediation: expunging environmental pollutants. Biotechnol Rep Amst Neth 26:e00452. https:\/\/doi.org\/10.1016\/j.btre.2020.e00452","journal-title":"Biotechnol Rep Amst Neth"},{"key":"2061_CR117","doi-asserted-by":"publisher","first-page":"17","DOI":"10.1007\/s13593-018-0491-9","volume":"38","author":"J Barthod","year":"2018","unstructured":"Barthod J, Rumpel C, Dignac M-F (2018) Composting with additives to improve organic amendments. A review Agron Sustain Dev 38:17. https:\/\/doi.org\/10.1007\/s13593-018-0491-9","journal-title":"A review Agron Sustain Dev"},{"key":"2061_CR118","doi-asserted-by":"publisher","first-page":"128246","DOI":"10.1016\/j.jhazmat.2022.128246","volume":"428","author":"M Tartaglia","year":"2022","unstructured":"Tartaglia M, Sciarrillo R, Zuzolo D et al (2022) Exploring an enhanced rhizospheric phenomenon for pluricontaminated soil remediation: insights from tripartite metatranscriptome analyses. J Hazard Mater 428:128246. https:\/\/doi.org\/10.1016\/j.jhazmat.2022.128246","journal-title":"J Hazard Mater"}],"container-title":["Microbial Ecology"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/link.springer.com\/content\/pdf\/10.1007\/s00248-022-02061-1.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/link.springer.com\/article\/10.1007\/s00248-022-02061-1\/fulltext.html","content-type":"text\/html","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/link.springer.com\/content\/pdf\/10.1007\/s00248-022-02061-1.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2023,5,3]],"date-time":"2023-05-03T00:03:42Z","timestamp":1683072222000},"score":1,"resource":{"primary":{"URL":"https:\/\/link.springer.com\/10.1007\/s00248-022-02061-1"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2022,7,8]]},"references-count":118,"journal-issue":{"issue":"3","published-print":{"date-parts":[[2023,4]]}},"alternative-id":["2061"],"URL":"https:\/\/doi.org\/10.1007\/s00248-022-02061-1","relation":{"has-preprint":[{"id-type":"doi","id":"10.21203\/rs.3.rs-1379922\/v1","asserted-by":"object"}]},"ISSN":["0095-3628","1432-184X"],"issn-type":[{"value":"0095-3628","type":"print"},{"value":"1432-184X","type":"electronic"}],"subject":[],"published":{"date-parts":[[2022,7,8]]},"assertion":[{"value":"17 January 2022","order":1,"name":"received","label":"Received","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"21 June 2022","order":2,"name":"accepted","label":"Accepted","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"8 July 2022","order":3,"name":"first_online","label":"First Online","group":{"name":"ArticleHistory","label":"Article History"}}]}}