{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,10,14]],"date-time":"2026-10-14T00:37:07Z","timestamp":1791938227312,"version":"4.3.4"},"reference-count":88,"publisher":"Springer Science and Business Media LLC","issue":"2","license":[{"start":{"date-parts":[[2022,12,26]],"date-time":"2022-12-26T00:00:00Z","timestamp":1672012800000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.springernature.com\/gp\/researchers\/text-and-data-mining"},{"start":{"date-parts":[[2022,12,26]],"date-time":"2022-12-26T00:00:00Z","timestamp":1672012800000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/www.springernature.com\/gp\/researchers\/text-and-data-mining"}],"funder":[{"DOI":"10.13039\/501100003141","name":"Consejo Nacional de Ciencia y Tecnolog\u00eda","doi-asserted-by":"publisher","award":["Basic Science 254406"],"award-info":[{"award-number":["Basic Science 254406"]}],"id":[{"id":"10.13039\/501100003141","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":["link.springer.com"],"crossmark-restriction":false},"short-container-title":["Microb Ecol"],"published-print":{"date-parts":[[2023,8]]},"DOI":"10.1007\/s00248-022-02162-x","type":"journal-article","created":{"date-parts":[[2022,12,26]],"date-time":"2022-12-26T11:09:48Z","timestamp":1672052988000},"page":"1176-1188","update-policy":"https:\/\/doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":12,"title":["Amino Acids in the Root Exudates of Agave lechuguilla Torr. Favor the Recruitment and Enzymatic Activity of Nutrient-Improvement Rhizobacteria"],"prefix":"10.1007","volume":"86","author":[{"ORCID":"https:\/\/orcid.org\/0000-0001-9729-2086","authenticated-orcid":false,"given":"Guadalupe Medina-de","family":"la Rosa","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-4138-1850","authenticated-orcid":false,"given":"Felipe","family":"Garc\u00eda-Oliva","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-0201-695X","authenticated-orcid":false,"given":"Cesar\u00e9","family":"Ovando-V\u00e1zquez","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-2694-3202","authenticated-orcid":false,"given":"Lourdes B.","family":"Celis-Garc\u00eda","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-6809-8919","authenticated-orcid":false,"given":"Luc\u00eda","family":"L\u00f3pez-Reyes","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-9074-1085","authenticated-orcid":false,"given":"Nguyen Esmeralda","family":"L\u00f3pez-Lozano","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"297","published-online":{"date-parts":[[2022,12,26]]},"reference":[{"key":"2162_CR1","doi-asserted-by":"publisher","unstructured":"Houri A, Machaka-Houri N (2016) Agave lechuguilla as a potential biomass source in arid areas. J Sustain Dev Energy Water Environ Syst 4:89\u201393. https:\/\/doi.org\/10.13044\/j.sdewes.2016.04.0008","DOI":"10.13044\/j.sdewes.2016.04.0008"},{"key":"2162_CR2","doi-asserted-by":"publisher","DOI":"10.1007\/978-3-642-16014-1","volume-title":"The end of desertification?","author":"R Behnke","year":"2016","unstructured":"Behnke R, Mortimore M (2016) The end of desertification? Springer, Berlin, Heidelberg"},{"key":"2162_CR3","doi-asserted-by":"publisher","first-page":"13","DOI":"10.1016\/j.micres.2015.12.003","volume":"184","author":"S Vurukonda","year":"2016","unstructured":"Vurukonda S, Vardharajula S, Shrivastava M et al (2016) Enhancement of drought stress tolerance in crops by plant growth promoting rhizobacteria. Microbiol Res 184:13\u201324. https:\/\/doi.org\/10.1016\/j.micres.2015.12.003","journal-title":"Microbiol Res"},{"key":"2162_CR4","doi-asserted-by":"publisher","first-page":"139","DOI":"10.1007\/s11104-015-2651-x","volume":"398","author":"Q Tao","year":"2016","unstructured":"Tao Q, Hou D, Yang X, Li T (2016) Oxalate secretion from the root apex of Sedum alfredii contributes to hyperaccumulation of Cd. Plant Soil 398:139\u2013152. https:\/\/doi.org\/10.1007\/s11104-015-2651-x","journal-title":"Plant Soil"},{"key":"2162_CR5","doi-asserted-by":"publisher","first-page":"40","DOI":"10.1007\/s00248-012-0164-1","volume":"66","author":"K Li","year":"2013","unstructured":"Li K, Liu R, Zhang H, Yun J (2013) The diversity and abundance of bacteria and oxygenic phototrophs in saline biological desert crusts in Xinjiang, Northwest China. Microb Ecol 66:40\u201348. https:\/\/doi.org\/10.1007\/s00248-012-0164-1","journal-title":"Microb Ecol"},{"key":"2162_CR6","doi-asserted-by":"publisher","first-page":"100","DOI":"10.1016\/j.micres.2017.11.011","volume":"207","author":"S Ray","year":"2018","unstructured":"Ray S, Mishra S, Bisen K et al (2018) Modulation in phenolic root exudate profile of Abelmoschus esculentus expressing activation of defense pathway. Microbiol Res 207:100\u2013107. https:\/\/doi.org\/10.1016\/j.micres.2017.11.011","journal-title":"Microbiol Res"},{"key":"2162_CR7","doi-asserted-by":"publisher","first-page":"1373","DOI":"10.2478\/s11756-019-00287-y","volume":"74","author":"B Rahmoune","year":"2019","unstructured":"Rahmoune B, Zerrouk I, Bouzaa S et al (2019) Amino acids profiling in Datura stramonium and study of their variations after inoculation with plant growth promoting rhizobacteria. Biologia 74:1373\u20131383. https:\/\/doi.org\/10.2478\/s11756-019-00287-y","journal-title":"Biologia"},{"key":"2162_CR8","doi-asserted-by":"publisher","first-page":"60","DOI":"10.1016\/j.chnaes.2016.09.001","volume":"37","author":"H Ma","year":"2017","unstructured":"Ma H, Pei G, Gao R et al (2017) Mineralization of amino acids and its signs in nitrogen cycling of forest soil. Acta Ecol Sin 37:60\u201363. https:\/\/doi.org\/10.1016\/j.chnaes.2016.09.001","journal-title":"Acta Ecol Sin"},{"key":"2162_CR9","doi-asserted-by":"publisher","first-page":"774","DOI":"10.1104\/pp.81.3.774","volume":"81","author":"E Rabe","year":"1986","unstructured":"Rabe E, Lovatt C (1986) Increased arginine biosynthesis during phosphorus deficiency. Plant physiol 81:774\u2013779. https:\/\/doi.org\/10.1104\/pp.81.3.774","journal-title":"Plant physiol"},{"key":"2162_CR10","doi-asserted-by":"publisher","first-page":"578","DOI":"10.1080\/00380768.2017.1407625","volume":"63","author":"T Yoneyama","year":"2017","unstructured":"Yoneyama T, Terakado-Tonooka J, Minamisawa K (2017) Exploration of bacterial N2-fixation systems in association with soil-grown sugarcane, sweet potato, and paddy rice: a review and synthesis. Soil Sci Plan Nutr 63:578\u2013590. https:\/\/doi.org\/10.1080\/00380768.2017.1407625","journal-title":"Soil Sci Plan Nutr"},{"key":"2162_CR11","doi-asserted-by":"publisher","first-page":"44","DOI":"10.1111\/ppl.12751","volume":"165","author":"N Hennion","year":"2019","unstructured":"Hennion N, Durand M, Vriet C et al (2019) Sugars en route to the roots. Transport, metabolism and storage within plant roots and towards microorganisms of the rhizosphere. Physiol Plant 165:44\u201357. https:\/\/doi.org\/10.1111\/ppl.12751","journal-title":"Physiol Plant"},{"key":"2162_CR12","doi-asserted-by":"publisher","first-page":"666","DOI":"10.1111\/j.1365-3040.2009.01926.x","volume":"32","author":"DV Badri","year":"2009","unstructured":"Badri DV, Vivanco JM (2009) Regulation and function of root exudates. Plant Cell Environ 32:666\u2013681. https:\/\/doi.org\/10.1111\/j.1365-3040.2009.01926.x","journal-title":"Plant Cell Environ"},{"key":"2162_CR13","doi-asserted-by":"publisher","first-page":"1563","DOI":"10.1016\/j.molp.2015.09.005","volume":"8","author":"TM Hildebrandt","year":"2015","unstructured":"Hildebrandt TM, Nunes Nesi A, Ara\u00fajo WL et al (2015) Amino acid catabolism in plants. Mol Plant 8:1563\u20131579. https:\/\/doi.org\/10.1016\/j.molp.2015.09.005","journal-title":"Mol Plant"},{"key":"2162_CR14","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1371\/journal.pone.0056457","volume":"8","author":"LC Carvalhais","year":"2013","unstructured":"Carvalhais LC, Dennis PG, Badri DV et al (2013) Activation of the jasmonic acid plant defense pathway alters the composition of rhizosphere bacterial communities. PLoS ONE 8:1\u20135. https:\/\/doi.org\/10.1371\/journal.pone.0056457","journal-title":"PLoS ONE"},{"key":"2162_CR15","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1186\/s40168-018-0537-x","volume":"6","author":"J Yuan","year":"2018","unstructured":"Yuan J, Zhao J, Wen T et al (2018) Root exudates drive the soil-borne legacy of aboveground pathogen infection. Microbiome 6:1\u201312. https:\/\/doi.org\/10.1186\/s40168-018-0537-x","journal-title":"Microbiome"},{"key":"2162_CR16","doi-asserted-by":"publisher","first-page":"729","DOI":"10.1007\/s00374-011-0605-x","volume":"47","author":"M Barret","year":"2011","unstructured":"Barret M, Morrissey JP, O\u2019Gara F (2011) Functional genomics analysis of plant growth-promoting rhizobacterial traits involved in rhizosphere competence. Biol Fertil Soils 47:729\u2013743. https:\/\/doi.org\/10.1007\/s00374-011-0605-x","journal-title":"Biol Fertil Soils"},{"key":"2162_CR17","doi-asserted-by":"publisher","first-page":"37","DOI":"10.5398\/TASJ.2018.41.1.37","volume":"41","author":"PS Hutapea","year":"2018","unstructured":"Hutapea PS, Abdullah L, Karti PDMH et al (2018) Improvement of Indigofera zollingeriana production and methionine content through inoculation of nitrogen-fixing bacteria. Trop Anim Sci J 41:37\u201345. https:\/\/doi.org\/10.5398\/TASJ.2018.41.1.37","journal-title":"Trop Anim Sci J"},{"key":"2162_CR18","doi-asserted-by":"publisher","first-page":"978","DOI":"10.1016\/j.orggeochem.2009.06.008","volume":"40","author":"A Miltner","year":"2009","unstructured":"Miltner A, Kindler R, Knicker H et al (2009) Fate of microbial biomass-derived amino acids in soil and their contribution to soil organic matter. Org Geochem 40:978\u2013985. https:\/\/doi.org\/10.1016\/j.orggeochem.2009.06.008","journal-title":"Org Geochem"},{"key":"2162_CR19","doi-asserted-by":"publisher","first-page":"78","DOI":"10.1016\/j.soilbio.2017.04.003","volume":"111","author":"C Huo","year":"2017","unstructured":"Huo C, Luo Y, Cheng W (2017) Rhizosphere priming effect: a meta-analysis. Soil Biol Biochem 111:78\u201384. https:\/\/doi.org\/10.1016\/j.soilbio.2017.04.003","journal-title":"Soil Biol Biochem"},{"key":"2162_CR20","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1007\/BF00033935","volume":"163","author":"DL Jones","year":"1994","unstructured":"Jones DL, Darrah PR (1994) Amino-acid influx at the soil-root interface of Zea mays L. and its implications in the rhizosphere. Plant Soil 163:1\u201312. https:\/\/doi.org\/10.1007\/BF00033935","journal-title":"Plant Soil"},{"key":"2162_CR21","doi-asserted-by":"publisher","first-page":"1692","DOI":"10.3732\/ajb.1300033","volume":"100","author":"LA Moe","year":"2013","unstructured":"Moe LA (2013) Amino acids in the rhizosphere: from plants to microbes. Am J Bot 100:1692\u20131705. https:\/\/doi.org\/10.3732\/ajb.1300033","journal-title":"Am J Bot"},{"key":"2162_CR22","doi-asserted-by":"publisher","first-page":"462","DOI":"10.1264\/jsme2.ME12005","volume":"27","author":"S Oku","year":"2012","unstructured":"Oku S, Komatsu A, Tajima T et al (2012) Identification of chemotaxis sensory proteins for amino acids in Pseudomonas fluorescens Pf0-1 and their involvement in chemotaxis to tomato root exudate and root colonization. Microbes Environ 27:462\u2013469. https:\/\/doi.org\/10.1264\/jsme2.ME12005","journal-title":"Microbes Environ"},{"key":"2162_CR23","doi-asserted-by":"publisher","DOI":"10.1016\/j.cpb.2020.100173","volume":"25","author":"AS Ayangbenro","year":"2021","unstructured":"Ayangbenro AS, Babalola OO (2021) Reclamation of arid and semi-arid soils: the role of plant growth-promoting archaea and bacteria. Curr Plant Biol 25:100173. https:\/\/doi.org\/10.1016\/j.cpb.2020.100173","journal-title":"Curr Plant Biol"},{"key":"2162_CR24","doi-asserted-by":"publisher","first-page":"1028","DOI":"10.3389\/fpls.2020.01028","volume":"11","author":"NE L\u00f3pez-Lozano","year":"2020","unstructured":"L\u00f3pez-Lozano NE, Echeverr\u00eda-Molinar A, Ortiz-Dur\u00e1n EA et al (2020) Bacterial diversity and interaction networks of Agave lechuguilla rhizosphere differ significantly from bulk soil in the oligotrophic Basin of Cuatro Ci\u00e9negas. Front Plant Sci 11:1028. https:\/\/doi.org\/10.3389\/fpls.2020.01028","journal-title":"Front Plant Sci"},{"key":"2162_CR25","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1093\/femsec\/fiab137","volume":"97","author":"G Medina-de la Rosa","year":"2021","unstructured":"Medina-de la Rosa G, Garc\u00eda-Oliva F, Alpuche-Sol\u00eds \u00c1G et al (2021) The nutrient-improvement bacteria selected by Agave lechuguilla T. and their role in the rhizosphere community. FEMS Microbiol 97:1\u201314. https:\/\/doi.org\/10.1093\/femsec\/fiab137","journal-title":"FEMS Microbiol"},{"key":"2162_CR26","doi-asserted-by":"publisher","first-page":"18723","DOI":"10.1016\/s0021-9258(17)32225-1","volume":"269","author":"L Zheng","year":"1994","unstructured":"Zheng L, Dean DR (1994) Catalytic formation of a nitrogenase iron-sulfur cluster. J Biol Chem 269:18723\u201318726. https:\/\/doi.org\/10.1016\/s0021-9258(17)32225-1","journal-title":"J Biol Chem"},{"key":"2162_CR27","doi-asserted-by":"publisher","first-page":"271","DOI":"10.1016\/S0580-9517(01)30049-1","volume":"30","author":"JP Zehr","year":"2001","unstructured":"Zehr JP, Turner PJ (2001) Nitrogen fixation: nitrogenase genes and gene expression. Methods Microbiol 30:271\u2013286. https:\/\/doi.org\/10.1016\/S0580-9517(01)30049-1","journal-title":"Methods Microbiol"},{"key":"2162_CR28","doi-asserted-by":"publisher","first-page":"539","DOI":"10.1046\/j.1462-2920.2003.00451.x","volume":"5","author":"JP Zehr","year":"2003","unstructured":"Zehr JP, Jenkins BD, Short SM et al (2003) Nitrogenase gene diversity and microbial community structure: a cross-system comparison. Environ Microbiol 5:539\u2013554. https:\/\/doi.org\/10.1046\/j.1462-2920.2003.00451.x","journal-title":"Environ Microbiol"},{"key":"2162_CR29","doi-asserted-by":"publisher","first-page":"3656","DOI":"10.5897\/AJMR12.098","volume":"6","author":"Y Abu-Zaitoon","year":"2012","unstructured":"Abu-Zaitoon Y, Abdul-Karim S (2012) Ecological studies on nitrogen fixing bacteria from leguminous plants at the north of Jordan. Afr J Microbiol Res 6:3656\u20133661. https:\/\/doi.org\/10.5897\/AJMR12.098","journal-title":"Afr J Microbiol Res"},{"key":"2162_CR30","doi-asserted-by":"publisher","first-page":"363","DOI":"10.1007\/s00726-005-0178-9","volume":"28","author":"J Gonz\u00e1lez-L\u00f3pez","year":"2005","unstructured":"Gonz\u00e1lez-L\u00f3pez J, Rodelas B, Pozo C et al (2005) Liberation of amino acids by heterotrophic nitrogen fixing bacteria. Amino Acids 28:363\u2013367. https:\/\/doi.org\/10.1007\/s00726-005-0178-9","journal-title":"Amino Acids"},{"key":"2162_CR31","doi-asserted-by":"publisher","first-page":"463","DOI":"10.1007\/s11284-014-1138-1","volume":"29","author":"Y Perroni","year":"2014","unstructured":"Perroni Y, Garc\u00eda-Oliva F, Tapia-Torres Y et al (2014) Relationship between soil P fractions and microbial biomass in an oligotrophic grassland-desert scrub system. Ecol Res 29:463\u2013472. https:\/\/doi.org\/10.1007\/s11284-014-1138-1","journal-title":"Ecol Res"},{"key":"2162_CR32","doi-asserted-by":"publisher","first-page":"32","DOI":"10.1016\/j.geoderma.2017.09.002","volume":"309","author":"F Garc\u00eda-Oliva","year":"2018","unstructured":"Garc\u00eda-Oliva F, Merino A, Fonturbel MT et al (2018) Severe wildfire hinders renewal of soil P pools by thermal mineralization of organic P in forest soil: analysis by sequential extraction and 31P NMR spectroscopy. Geoderma 309:32\u201340. https:\/\/doi.org\/10.1016\/j.geoderma.2017.09.002","journal-title":"Geoderma"},{"key":"2162_CR33","doi-asserted-by":"publisher","first-page":"197","DOI":"10.1016\/j.apsoil.2017.06.019","volume":"119","author":"X Chen","year":"2017","unstructured":"Chen X, Jiang N, Chen Z et al (2017) Response of soil phoD phosphatase gene to long-term combined applications of chemical fertilizers and organic materials. Appl Soil Ecol 119:197\u2013204. https:\/\/doi.org\/10.1016\/j.apsoil.2017.06.019","journal-title":"Appl Soil Ecol"},{"key":"2162_CR34","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1371\/journal.pone.0068555","volume":"8","author":"LC Carvalhais","year":"2013","unstructured":"Carvalhais LC, Dennis PG, Fan B et al (2013) Linking plant nutritional status to plant-microbe interactions. PLoS ONE 8:1\u201313. https:\/\/doi.org\/10.1371\/journal.pone.0068555","journal-title":"PLoS ONE"},{"key":"2162_CR35","doi-asserted-by":"publisher","first-page":"93","DOI":"10.1007\/BF00365567","volume":"104","author":"A-M Trame","year":"1995","unstructured":"Trame A-M, Coddington AJ, Paige KN (1995) Field and genetic studies testing optimal outcrossing in Agave schottii, a long-lived clonal plant. Oecologia 104:93\u2013100. https:\/\/doi.org\/10.1007\/BF00365567","journal-title":"Oecologia"},{"key":"2162_CR36","unstructured":"SEMARNAT (2002) Norma Oficial Mexicana Nom-021-Semarnat-2000 Que establece las especificaciones de fertilidad, salinidad y clasificaci\u00f3n de suelos, estudio, muestreo y an\u00e1lisis. Diario Oficial de la Federaci\u00f3n. http:\/\/faolex.fao.org\/docs\/pdf\/mex50674.pdf. Accessed 08 Octuber 2022"},{"key":"2162_CR37","doi-asserted-by":"publisher","first-page":"55","DOI":"10.1016\/S0304-4203(00)00066-9","volume":"72","author":"CJ Schubert","year":"2000","unstructured":"Schubert CJ, Nielsen B (2000) Effects of decarbonation treatments on \u03b413C values in marine sediments. Mar Chem 72:55\u201359. https:\/\/doi.org\/10.1016\/S0304-4203(00)00066-9","journal-title":"Mar Chem"},{"key":"2162_CR38","doi-asserted-by":"publisher","first-page":"39","DOI":"10.1097\/00010694-194501000-00006","volume":"59","author":"RH Bray","year":"1945","unstructured":"Bray RH, Kurtz LT (1945) Determination of total, organic, and available forms of phosphorus in soils. Soil Sci 59:39\u201346. https:\/\/doi.org\/10.1097\/00010694-194501000-00006","journal-title":"Soil Sci"},{"key":"2162_CR39","doi-asserted-by":"publisher","first-page":"1051","DOI":"10.1080\/00103628309367431","volume":"14","author":"DW Nelson","year":"1983","unstructured":"Nelson DW (1983) Determination of ammonium in KCl extracts of soils by the salicylate method. Commun Soil Sci Plant Anal 14:1051\u20131062. https:\/\/doi.org\/10.1080\/00103628309367431","journal-title":"Commun Soil Sci Plant Anal"},{"key":"2162_CR40","doi-asserted-by":"publisher","first-page":"30","DOI":"10.1016\/j.marchem.2014.03.002","volume":"162","author":"E Garc\u00eda-Robledo","year":"2014","unstructured":"Garc\u00eda-Robledo E, Corzo A, Papaspyrou S (2014) A fast and direct spectrophotometric method for the sequential determination of nitrate and nitrite at low concentrations in small volumes. Mar Chem 162:30\u201336. https:\/\/doi.org\/10.1016\/j.marchem.2014.03.002","journal-title":"Mar Chem"},{"key":"2162_CR41","doi-asserted-by":"publisher","first-page":"421","DOI":"10.2136\/sssaj1978.03615995004200030009x","volume":"42","author":"WL Lindsay","year":"1978","unstructured":"Lindsay WL, Norvell WA (1978) Development of a DTPA soil test for zinc, iron, manganese, and copper. SSSAJ 42:421\u2013428. https:\/\/doi.org\/10.2136\/sssaj1978.03615995004200030009x","journal-title":"SSSAJ"},{"key":"2162_CR42","doi-asserted-by":"publisher","first-page":"327","DOI":"10.1111\/j.1550-7408.1999.tb04612.x","volume":"46","author":"S Turner","year":"1999","unstructured":"Turner S, Pryer KM, Miao VPW et al (1999) Investigating deep phylogenetic relationships among Cyanobacteria and plastids by small subunit rRNA sequence analysis. J Eukaryot Microbiol 46:327\u2013338. https:\/\/doi.org\/10.1111\/j.1550-7408.1999.tb04612.x","journal-title":"J Eukaryot Microbiol"},{"key":"2162_CR43","doi-asserted-by":"publisher","first-page":"2593","DOI":"10.1128\/AEM.63.7.2593-2599.1997","volume":"63","author":"K Rudi","year":"1997","unstructured":"Rudi K, Skulberg OM, Larsen F et al (1997) Strain characterization and classification of oxyphotobacteria in clone cultures on the basis of 16S rRNA sequences from the variable regions V6, V7, and V8. Appl Environ Microbiol 63:2593\u20132599. https:\/\/doi.org\/10.1128\/AEM.63.7.2593-2599.1997","journal-title":"Appl Environ Microbiol"},{"key":"2162_CR44","unstructured":"R Core Team (2020) R: A language and environment for statistical computing"},{"key":"2162_CR45","doi-asserted-by":"publisher","first-page":"11","DOI":"10.1186\/s40793-020-00358-7","volume":"15","author":"F Wemheuer","year":"2020","unstructured":"Wemheuer F, Taylor JA, Daniel R et al (2020) Tax4Fun2: prediction of habitat-specific functional profiles and functional redundancy based on 16S rRNA gene sequences. Environ Microbiome 15:11. https:\/\/doi.org\/10.1186\/s40793-020-00358-7","journal-title":"Environ Microbiome"},{"key":"2162_CR46","doi-asserted-by":"publisher","first-page":"317","DOI":"10.1007\/s11104-016-2807-3","volume":"403","author":"NE L\u00f3pez-Lozano","year":"2016","unstructured":"L\u00f3pez-Lozano NE, Carca\u00f1o-Montiel MG, Bashan Y (2016) Using native trees and cacti to improve soil potential nitrogen fixation during long-term restoration of arid lands. Plant Soil 403:317\u2013329. https:\/\/doi.org\/10.1007\/s11104-016-2807-3","journal-title":"Plant Soil"},{"key":"2162_CR47","doi-asserted-by":"publisher","first-page":"167","DOI":"10.1016\/0038-0717(77)90070-0","volume":"9","author":"F Eivazi","year":"1977","unstructured":"Eivazi F, Tabatabai MA (1977) Phosphatases in soil. Soil Biol Biochem 9:167\u2013172. https:\/\/doi.org\/10.1016\/0038-0717(77)90070-0","journal-title":"Soil Biol Biochem"},{"key":"2162_CR48","doi-asserted-by":"publisher","first-page":"95","DOI":"10.1016\/S0923-2508(00)01172-4","volume":"152","author":"F Poly","year":"2001","unstructured":"Poly F, Monrozier LJ, Bally R (2001) Improvement in the RFLP procedure for studying the diversity of nifH genes in communities of nitrogen fixers in soil. Res Microbiol 152:95\u2013103. https:\/\/doi.org\/10.1016\/S0923-2508(00)01172-4","journal-title":"Res Microbiol"},{"key":"2162_CR49","doi-asserted-by":"publisher","first-page":"3278","DOI":"10.1128\/AEM.57.11.3278-3286.1991","volume":"57","author":"P Simonet","year":"1991","unstructured":"Simonet P, Grosjean MC, Misra AK et al (1991) Frankia genus-specific characterization by polymerase chain reaction. Appl Environ Microbiol 57:3278\u20133286. https:\/\/doi.org\/10.1128\/AEM.57.11.3278-3286.1991","journal-title":"Appl Environ Microbiol"},{"key":"2162_CR50","doi-asserted-by":"publisher","first-page":"7281","DOI":"10.1128\/AEM.01823-15","volume":"81","author":"SA Ragot","year":"2015","unstructured":"Ragot SA, Kertesz MA, B\u00fcnemann EK (2015) phoD alkaline phosphatase gene diversity in soil. Appl Environ Microbiol 81:7281\u20137289. https:\/\/doi.org\/10.1128\/AEM.01823-15","journal-title":"Appl Environ Microbiol"},{"key":"2162_CR51","unstructured":"Oksanen J, Blanchet FG, Friendly M et al (2020) vegan: Community ecology package"},{"key":"2162_CR52","doi-asserted-by":"publisher","first-page":"1188","DOI":"10.1038\/s41396-017-0026-4","volume":"12","author":"F Mapelli","year":"2018","unstructured":"Mapelli F, Marasco R, Fusi M et al (2018) The stage of soil development modulates rhizosphere effect along a High Arctic desert chronosequence. ISME J 12:1188\u20131198. https:\/\/doi.org\/10.1038\/s41396-017-0026-4","journal-title":"ISME J"},{"key":"2162_CR53","doi-asserted-by":"publisher","first-page":"111","DOI":"10.5154\/r.rchscfa.2010.10.102","volume":"17","author":"D Granados-S\u00e1nchez","year":"2011","unstructured":"Granados-S\u00e1nchez D, S\u00e1nchez-Gonz\u00e1lez A, Granados-Victorino RL et al (2011) Ecolog\u00eda de la vegetaci\u00f3n del Desierto Chihuahuense. Rev Chapingo Ser Cienc For Ambiente 17:111\u2013130. https:\/\/doi.org\/10.5154\/r.rchscfa.2010.10.102","journal-title":"Rev Chapingo Ser Cienc For Ambiente"},{"key":"2162_CR54","doi-asserted-by":"publisher","first-page":"109","DOI":"10.1007\/978-3-642-05076-3_6","volume-title":"Soil biology and agriculture in the tropic","author":"Y Bashan","year":"2010","unstructured":"Bashan Y, De-Bashan LE (2010) Microbial populations of arid lands and their potential for restoration of deserts. In: Dion P (ed) Soil biology and agriculture in the tropic. Springer, Berlin, pp 109\u2013137"},{"key":"2162_CR55","doi-asserted-by":"publisher","first-page":"583","DOI":"10.1007\/s00374-020-01435-2","volume":"56","author":"W Liu","year":"2020","unstructured":"Liu W, Ling N, Guo J et al (2020) Legacy effects of 8-year nitrogen inputs on bacterial assemblage in wheat rhizosphere. Biol Fertil Soils 56:583\u2013596. https:\/\/doi.org\/10.1007\/s00374-020-01435-2","journal-title":"Biol Fertil Soils"},{"key":"2162_CR56","doi-asserted-by":"publisher","first-page":"215","DOI":"10.1146\/annurev-micro-102215-095236","volume":"70","author":"AT Bull","year":"2016","unstructured":"Bull AT, Asenjo JA, Goodfellow M et al (2016) The Atacama Desert: technical resources and the growing importance of novel microbial diversity. Annu Rev Microbiol 70:215\u2013234. https:\/\/doi.org\/10.1146\/annurev-micro-102215-095236","journal-title":"Annu Rev Microbiol"},{"key":"2162_CR57","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1155\/2021\/6637438","volume":"2021","author":"RE Othmany","year":"2021","unstructured":"Othmany RE, Zahir H, Ellouali M et al (2021) Current understanding on adhesion and biofilm development in Actinobacteria. Int J Micrbiol 2021:1\u201311. https:\/\/doi.org\/10.1155\/2021\/6637438","journal-title":"Int J Micrbiol"},{"key":"2162_CR58","doi-asserted-by":"publisher","first-page":"1467","DOI":"10.1007\/s10482-018-1030-z","volume":"111","author":"ME Rateb","year":"2018","unstructured":"Rateb ME, Ebel R, Jaspars M (2018) Natural product diversity of actinobacteria in the Atacama Desert. Antonie Van Leeuwenhoek 111:1467\u20131477. https:\/\/doi.org\/10.1007\/s10482-018-1030-z","journal-title":"Antonie Van Leeuwenhoek"},{"key":"2162_CR59","doi-asserted-by":"publisher","first-page":"2556","DOI":"10.2166\/wst.2012.479","volume":"66","author":"T Kindaichi","year":"2012","unstructured":"Kindaichi T, Yuri S, Ozaki N et al (2012) Ecophysiological role and function of uncultured Chloroflexi in an anammox reactor. Water Sci Technol 66:2556\u20132561. https:\/\/doi.org\/10.2166\/wst.2012.479","journal-title":"Water Sci Technol"},{"key":"2162_CR60","doi-asserted-by":"publisher","first-page":"431","DOI":"10.1016\/j.plantsci.2010.11.010","volume":"180","author":"CP Witte","year":"2011","unstructured":"Witte CP (2011) Urea metabolism in plants. Plant Sci 180:431\u2013438. https:\/\/doi.org\/10.1016\/j.plantsci.2010.11.010","journal-title":"Plant Sci"},{"key":"2162_CR61","doi-asserted-by":"publisher","first-page":"546","DOI":"10.2503\/jjshs.73.546","volume":"73","author":"A Ninomiya","year":"2004","unstructured":"Ninomiya A, Murata Y, Tada M et al (2004) Changes in allantoin and arginine contents in Dioscorea opposita \u201cTsukuneimo\u201d during the growth. Engei Gakkai zasshi 73:546\u2013551. https:\/\/doi.org\/10.2503\/jjshs.73.546","journal-title":"Engei Gakkai zasshi"},{"key":"2162_CR62","doi-asserted-by":"publisher","first-page":"995","DOI":"10.1094\/MPMI-01-18-0003-R","volume":"31","author":"H Feng","year":"2018","unstructured":"Feng H, Zhang N, Du W et al (2018) Identification of chemotaxis compounds in root exudates and their sensing chemoreceptors in plant-growth-promoting rhizobacteria Bacillus amyloliquefaciens SQR9. Mol Plant Microbe Interact 31:995\u20131005. https:\/\/doi.org\/10.1094\/MPMI-01-18-0003-R","journal-title":"Mol Plant Microbe Interact"},{"key":"2162_CR63","doi-asserted-by":"publisher","first-page":"82","DOI":"10.1016\/j.phytochem.2018.02.003","volume":"149","author":"CA Schenck","year":"2018","unstructured":"Schenck CA, Maeda HA (2018) Tyrosine biosynthesis, metabolism, and catabolism in plants. Phytochemistry 149:82\u2013102","journal-title":"Phytochemistry"},{"key":"2162_CR64","doi-asserted-by":"publisher","first-page":"3225","DOI":"10.1007\/s00018-012-1091-5","volume":"69","author":"T Obata","year":"2012","unstructured":"Obata T, Fernie AR (2012) The use of metabolomics to dissect plant responses to abiotic stresses. Cell Mol Life Sci 69:3225\u20133243. https:\/\/doi.org\/10.1007\/s00018-012-1091-5","journal-title":"Cell Mol Life Sci"},{"key":"2162_CR65","doi-asserted-by":"publisher","first-page":"397","DOI":"10.4067\/S0718-95162015005000036","volume":"15","author":"Z Rengel","year":"2015","unstructured":"Rengel Z (2015) Availability of Mn, Zn and Fe in the rhizosphere. J Soil Sci Plant Nutr 15:397\u2013409. https:\/\/doi.org\/10.4067\/S0718-95162015005000036","journal-title":"J Soil Sci Plant Nutr"},{"key":"2162_CR66","doi-asserted-by":"publisher","first-page":"2593","DOI":"10.3389\/fmicb.2017.02593","volume":"8","author":"S Kamran","year":"2017","unstructured":"Kamran S, Shahid I, Baig DN et al (2017) Contribution of zinc solubilizing bacteria in growth promotion and zinc content of wheat. Front Microbiol 8:2593. https:\/\/doi.org\/10.3389\/fmicb.2017.02593","journal-title":"Front Microbiol"},{"key":"2162_CR67","doi-asserted-by":"publisher","unstructured":"Eshaghi E, Nosrati R, Owlia P et al (2019) Zinc solubilization characteristics of efficient siderophore-producing soil bacteria. Iran J Microbiol 11:419\u2013430. https:\/\/doi.org\/10.18502\/ijm.v11i5.1961","DOI":"10.18502\/ijm.v11i5.1961"},{"key":"2162_CR68","doi-asserted-by":"publisher","first-page":"1283","DOI":"10.1111\/j.1365-2672.2006.03179.x","volume":"102","author":"D Saravanakumar","year":"2007","unstructured":"Saravanakumar D, Samiyappan R (2007) ACC deaminase from Pseudomonas fluorescens mediated saline resistance in groundnut (Arachis hypogea) plants. J Appl Microbiol 102:1283\u20131292. https:\/\/doi.org\/10.1111\/j.1365-2672.2006.03179.x","journal-title":"J Appl Microbiol"},{"key":"2162_CR69","doi-asserted-by":"crossref","unstructured":"Meena VS (2018) Role of rhizospheric microbes in soil. Springer Singapore","DOI":"10.1007\/978-981-13-0044-8"},{"key":"2162_CR70","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1093\/database\/bau001","volume":"2014","author":"JC Gaby","year":"2014","unstructured":"Gaby JC, Buckley DH (2014) A comprehensive aligned nifH gene database: a multipurpose tool for studies of nitrogen-fixing bacteria. Database 2014:1\u20138. https:\/\/doi.org\/10.1093\/database\/bau001","journal-title":"Database"},{"key":"2162_CR71","doi-asserted-by":"publisher","first-page":"661","DOI":"10.1016\/j.tplants.2017.05.004","volume":"22","author":"D Coskun","year":"2017","unstructured":"Coskun D, Britto DT, Shi W et al (2017) How plant root exudates shape the nitrogen cycle. Trends Plant Sci 22:661\u2013673. https:\/\/doi.org\/10.1016\/j.tplants.2017.05.004","journal-title":"Trends Plant Sci"},{"key":"2162_CR72","doi-asserted-by":"publisher","first-page":"411","DOI":"10.1128\/JB.183.2.411-425.2001","volume":"183","author":"A Herrero","year":"2001","unstructured":"Herrero A, Muro-Pastor AM, Flores E (2001) Nitrogen control in Cyanobacteria. J Bacteriol 183:411\u2013425. https:\/\/doi.org\/10.1128\/JB.183.2.411-425.2001","journal-title":"J Bacteriol"},{"key":"2162_CR73","doi-asserted-by":"publisher","first-page":"709","DOI":"10.1094\/MPMI.2003.16.8.709","volume":"16","author":"K Mandon","year":"2003","unstructured":"Mandon K, \u00d8ster\u00e5s M, Boncompagni E et al (2003) The Sinorhizobium meliloti glycine betaine biosynthetic genes (betICBA) are induced by choline and highly expressed in bacteroids. Mol Plant Microbe Interact 16:709\u2013719. https:\/\/doi.org\/10.1094\/MPMI.2003.16.8.709","journal-title":"Mol Plant Microbe Interact"},{"key":"2162_CR74","doi-asserted-by":"publisher","first-page":"15","DOI":"10.1007\/s11104-008-9560-1","volume":"312","author":"S Spaepen","year":"2008","unstructured":"Spaepen S, Dobbelaere S, Croonenborghs A et al (2008) Effects of Azospirillum brasilense indole-3-acetic acid production on inoculated wheat plants. Plant Soil 312:15\u201323. https:\/\/doi.org\/10.1007\/s11104-008-9560-1","journal-title":"Plant Soil"},{"key":"2162_CR75","unstructured":"Bahuguna RN, Pal M (2011) Physiology of nitrogen fixation in legumes under elevated CO2. In: Singh MP, Khetarpal S, Pandey R et al (eds) Climate change: impacts and adaptations in crop plants. Today and tomorrow, New Delhi, pp 213\u2013228"},{"key":"2162_CR76","doi-asserted-by":"publisher","first-page":"3987","DOI":"10.1074\/jbc.R114.578161","volume":"290","author":"AS Byer","year":"2015","unstructured":"Byer AS, Shepard EM, Peters JW et al (2015) Radical S-adenosyl-l-methionine chemistry in the synthesis of hydrogenase and nitrogenase metal cofactors. J Biol Chem 290:3987\u20133994. https:\/\/doi.org\/10.1074\/jbc.R114.578161","journal-title":"J Biol Chem"},{"key":"2162_CR77","doi-asserted-by":"publisher","first-page":"2887","DOI":"10.1104\/pp.104.044222","volume":"136","author":"DA Phillips","year":"2004","unstructured":"Phillips DA, Fox TC, King MD et al (2004) Microbial products trigger amino acid exudation from plant roots. Plant Physiol 136:2887\u20132894. https:\/\/doi.org\/10.1104\/pp.104.044222","journal-title":"Plant Physiol"},{"key":"2162_CR78","first-page":"103","volume-title":"Cuatro Ci\u00e9negas Ecology, natural history and microbiology","author":"MD Rodr\u00edguez","year":"2018","unstructured":"Rodr\u00edguez MD, Alcaraz LD, Souza V et al (2018) Single genus approach to understanding bacterial diversity, niche, distribution, and genomics: the Bacillus in Cuatro Ci\u00e9negas. In: Souza V, Eguiarte LE, Olmedo-\u00c1lvarez G (eds) Cuatro Ci\u00e9negas Ecology, natural history and microbiology. Springer, Switzerland, pp 103\u2013112"},{"key":"2162_CR79","doi-asserted-by":"publisher","first-page":"4652","DOI":"10.1128\/AEM.00160-16","volume":"82","author":"Y Tapia-Torres","year":"2016","unstructured":"Tapia-Torres Y, Rodr\u00edguez-Torres MD, Elser JJ et al (2016) How to live with phosphorus scarcity in soil and sediment: lessons from bacteria. Appl Environ Microbiol 82:4652\u20134662. https:\/\/doi.org\/10.1128\/AEM.00160-16","journal-title":"Appl Environ Microbiol"},{"key":"2162_CR80","doi-asserted-by":"publisher","first-page":"170","DOI":"10.1016\/j.tim.2018.01.002","volume":"26","author":"Y Tapia-Torres","year":"2018","unstructured":"Tapia-Torres Y, Olmedo-\u00c1lvarez G (2018) Life on phosphite: a metagenomics tale. Trends Microbiol 26:170\u2013172. https:\/\/doi.org\/10.1016\/j.tim.2018.01.002","journal-title":"Trends Microbiol"},{"key":"2162_CR81","doi-asserted-by":"publisher","first-page":"4504","DOI":"10.1128\/AEM.67.10.4504-4511.2001","volume":"67","author":"S Zappa","year":"2001","unstructured":"Zappa S, Rolland JL, Flament D et al (2001) Characterization of a highly thermostable alkaline phosphatase from the Euryarchaeon Pyrococcus abyssi. Appl Environ Microbiol 67:4504\u20134511. https:\/\/doi.org\/10.1128\/AEM.67.10.4504-4511.2001","journal-title":"Appl Environ Microbiol"},{"key":"2162_CR82","doi-asserted-by":"publisher","first-page":"136","DOI":"10.1111\/mec.13010","volume":"24","author":"J-Q Su","year":"2015","unstructured":"Su J-Q, Ding L-J, Xue K et al (2015) Long-term balanced fertilization increases the soil microbial functional diversity in a phosphorus-limited paddy soil. Mol Ecol 24:136\u2013150. https:\/\/doi.org\/10.1111\/mec.13010","journal-title":"Mol Ecol"},{"key":"2162_CR83","doi-asserted-by":"publisher","first-page":"2743S","DOI":"10.1093\/jn\/134.10.2743S","volume":"134","author":"SM Morris","year":"2004","unstructured":"Morris SM (2004) Enzymes of arginine metabolism. J Nutr 134:2743S-2747S. https:\/\/doi.org\/10.1093\/jn\/134.10.2743S","journal-title":"J Nutr"},{"key":"2162_CR84","doi-asserted-by":"publisher","first-page":"1631","DOI":"10.1093\/pcp\/pcaa085","volume":"61","author":"Z Si","year":"2020","unstructured":"Si Z, Guan N, Zhou Y et al (2020) A methionine sulfoxide reductase B is required for the establishment of Astragalus sinicus\u2013Mesorhizobium symbiosis. Plant Cell Physiol 61:1631\u20131645. https:\/\/doi.org\/10.1093\/pcp\/pcaa085","journal-title":"Plant Cell Physiol"},{"key":"2162_CR85","doi-asserted-by":"publisher","first-page":"254","DOI":"10.1016\/j.soilbio.2013.05.028","volume":"65","author":"M Spohn","year":"2013","unstructured":"Spohn M, Ermak A, Kuzyakov Y (2013) Microbial gross organic phosphorus mineralization can be stimulated by root exudates \u2013 a 33P isotopic dilution study. Soil Biol Biochem 65:254\u2013263. https:\/\/doi.org\/10.1016\/j.soilbio.2013.05.028","journal-title":"Soil Biol Biochem"},{"key":"2162_CR86","doi-asserted-by":"publisher","first-page":"34","DOI":"10.47552\/ijam.v10i1.1219","volume":"10","author":"R Tavakoli","year":"2019","unstructured":"Tavakoli R, Rastegar S, Khaledi M et al (2019) Investigating effect of amino acids leucine, valine and alanine on alkaline phosphatase activity of purified acetone fractions of sweet lemon, garlic and onion. Int J Ayurvedic Med 10:34\u201338","journal-title":"Int J Ayurvedic Med"},{"key":"2162_CR87","doi-asserted-by":"publisher","first-page":"465","DOI":"10.1016\/S0021-9258(18)57328-2","volume":"174","author":"O Bodansky","year":"1948","unstructured":"Bodansky O (1948) The inhibitory effects of DL-alanine, L-glutamic acid, L-lysine, and L-histidine on the activity of intestinal, bone and kidney phosphatases. J Biol Chem 174:465\u2013476. https:\/\/doi.org\/10.1016\/S0021-9258(18)57328-2","journal-title":"J Biol Chem"},{"key":"2162_CR88","first-page":"1313","volume":"34","author":"PPL So","year":"2007","unstructured":"So PPL, Tsui FWL, Vieth R et al (2007) Implications for calcium pyrophosphate dihydrate crystal deposition disease. J Rheumatol 34:1313\u20131322","journal-title":"J Rheumatol"}],"container-title":["Microbial Ecology"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/link.springer.com\/content\/pdf\/10.1007\/s00248-022-02162-x.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/link.springer.com\/article\/10.1007\/s00248-022-02162-x\/fulltext.html","content-type":"text\/html","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/link.springer.com\/content\/pdf\/10.1007\/s00248-022-02162-x.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2023,7,11]],"date-time":"2023-07-11T09:10:24Z","timestamp":1689066624000},"score":1,"resource":{"primary":{"URL":"https:\/\/link.springer.com\/10.1007\/s00248-022-02162-x"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2022,12,26]]},"references-count":88,"journal-issue":{"issue":"2","published-print":{"date-parts":[[2023,8]]}},"alternative-id":["2162"],"URL":"https:\/\/doi.org\/10.1007\/s00248-022-02162-x","relation":{},"ISSN":["0095-3628","1432-184X"],"issn-type":[{"value":"0095-3628","type":"print"},{"value":"1432-184X","type":"electronic"}],"subject":[],"published":{"date-parts":[[2022,12,26]]},"assertion":[{"value":"3 August 2022","order":1,"name":"received","label":"Received","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"15 December 2022","order":2,"name":"accepted","label":"Accepted","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"26 December 2022","order":3,"name":"first_online","label":"First Online","group":{"name":"ArticleHistory","label":"Article History"}},{"order":1,"name":"Ethics","group":{"name":"EthicsHeading","label":"Declarations"}},{"value":"The authors declare no competing interests.","order":2,"name":"Ethics","group":{"name":"EthicsHeading","label":"Conflict of Interest"}}]}}