{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,4,30]],"date-time":"2026-04-30T23:13:51Z","timestamp":1777590831389,"version":"3.51.4"},"reference-count":49,"publisher":"Springer Science and Business Media LLC","issue":"3","license":[{"start":{"date-parts":[[2023,4,5]],"date-time":"2023-04-05T00:00:00Z","timestamp":1680652800000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.springernature.com\/gp\/researchers\/text-and-data-mining"},{"start":{"date-parts":[[2023,4,5]],"date-time":"2023-04-05T00:00:00Z","timestamp":1680652800000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/www.springernature.com\/gp\/researchers\/text-and-data-mining"}],"content-domain":{"domain":["link.springer.com"],"crossmark-restriction":false},"short-container-title":["Microb Ecol"],"published-print":{"date-parts":[[2023,10]]},"DOI":"10.1007\/s00248-023-02202-0","type":"journal-article","created":{"date-parts":[[2023,4,5]],"date-time":"2023-04-05T09:58:38Z","timestamp":1680688718000},"page":"2202-2209","update-policy":"https:\/\/doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":3,"title":["Diversity of Microbiomes Across a 13,000-Year-Old Amazon Sediment"],"prefix":"10.1007","volume":"86","author":[{"ORCID":"https:\/\/orcid.org\/0000-0001-9510-3675","authenticated-orcid":false,"given":"Cristiane C.","family":"Thompson","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Diogo","family":"Tschoeke","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Felipe H.","family":"Coutinho","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Luciana","family":"Leomil","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Gizele D.","family":"Garcia","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Koko","family":"Otsuki","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Bruno J.","family":"Turcq","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Luciane S.","family":"Moreira","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Patr\u00edcia F. M.","family":"Turcq","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Renato C.","family":"Cordeiro","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Nils E.","family":"Asp","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Fabiano L.","family":"Thompson","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"297","published-online":{"date-parts":[[2023,4,5]]},"reference":[{"issue":"3","key":"2202_CR1","doi-asserted-by":"publisher","first-page":"373","DOI":"10.1007\/s00300-012-1267-3.S2CID11705986","volume":"36","author":"MJ Amen\u00e1bar","year":"2013","unstructured":"Amen\u00e1bar MJ, Flores PA, Pugin B, Boehmwald FA, Blamey JM (2013) Archaeal diversity from hydrothermal systems of Deception Island. Antarctica Polar Biol 36(3):373\u2013380. https:\/\/doi.org\/10.1007\/s00300-012-1267-3.S2CID11705986","journal-title":"Antarctica Polar Biol"},{"issue":"1","key":"2202_CR2","doi-asserted-by":"publisher","first-page":"71","DOI":"10.1007\/s10533-010-9564-9","volume":"106","author":"M Bardy","year":"2011","unstructured":"Bardy M, Derenne S, Allard T, Benedetti MF, Fritsch E (2011) Podzolisation and exportation of organic matter in black waters of the Rio Negro (upper Amazon basin, Brazil). Biogeochem 106(1):71\u201388. https:\/\/doi.org\/10.1007\/s10533-010-9564-9","journal-title":"Biogeochem"},{"key":"2202_CR3","doi-asserted-by":"publisher","first-page":"725","DOI":"10.1038\/nbt.3893","volume":"35","author":"RM Bowers","year":"2017","unstructured":"Bowers RM, Kyrpides NC, Stepanauskas R, Harmon-Smith M, Doud D, Reddy TBK, Schulz F, Jarett J, Rivers AR, Eloe-Fadrosh EA et al (2017) Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea. Nat Biotechnol 35:725\u2013731","journal-title":"Nat Biotechnol"},{"key":"2202_CR4","doi-asserted-by":"publisher","first-page":"659079","DOI":"10.3389\/fmicb.2021.659079","volume":"12","author":"S Buessecker","year":"2021","unstructured":"Buessecker S, Zamora Z, Sarno AF, Finn DR, Hoyt AM, van Haren J, Urquiza Mu\u00f1oz JD, Cadillo-Quiroz H (2021) Microbial communities and interactions of nitrogen oxides with methanogenesis in diverse peatlands of the Amazon basin. Front Microbiol 12:659079. https:\/\/doi.org\/10.3389\/fmicb.2021.659079","journal-title":"Front Microbiol"},{"issue":"1","key":"2202_CR5","doi-asserted-by":"publisher","first-page":"4382","DOI":"10.1038\/s41598-018-22380-z","volume":"8","author":"E Buscardo","year":"2018","unstructured":"Buscardo E, Geml J, Schmidt SK, Freitas H, da Cunha HB, Nagy L (2018) Spatio-temporal dynamics of soil bacterial communities as a function of Amazon forest phenology. Sci Rep 8(1):4382. https:\/\/doi.org\/10.1038\/s41598-018-22380-z","journal-title":"Sci Rep"},{"key":"2202_CR6","doi-asserted-by":"crossref","unstructured":"Canganella F, Jones WJ, Gambacorta A, Antranikian G (1998) Thermococcus guaymasensis sp. nov. and Thermococcus aggregans sp. nov., two novel thermophilic archaea isolated from the Guaymas Basin hydrothermal vent site. Int J Syst Bacteriol 48 Pt 4(4): 1181\u20135","DOI":"10.1099\/00207713-48-4-1181"},{"issue":"5","key":"2202_CR7","doi-asserted-by":"publisher","first-page":"2814","DOI":"10.1111\/jam.15742","volume":"133","author":"S Chaudhary","year":"2022","unstructured":"Chaudhary S, Dhanker R, Singh K, Brar B, Goyal S (2022) Characterization of sulfur-oxidizing bacteria isolated from mustard (Brassica juncea L) rhizosphere having the capability of improving sulfur and nitrogen uptake. J Appl Microbiol 133(5):2814\u20132825. https:\/\/doi.org\/10.1111\/jam.15742","journal-title":"J Appl Microbiol"},{"key":"2202_CR8","doi-asserted-by":"publisher","first-page":"1925","DOI":"10.1093\/bioinformatics\/btz848","volume":"36","author":"PA Chaumeil","year":"2019","unstructured":"Chaumeil PA, Mussig AJ, Hugenholtz P, Parks DH (2019) GTDB-Tk: a toolkit to classify genomes with the genome taxonomy database. Bioinformatics 36:1925\u20131927","journal-title":"Bioinformatics"},{"key":"2202_CR9","doi-asserted-by":"publisher","first-page":"234","DOI":"10.1007\/BF01945546","volume":"43","author":"A Chauvel","year":"1987","unstructured":"Chauvel A, Lucas Y, Boulet R (1987) On the genesis of the soil mantle of the region of Manaus, Central Amazonia, Brazil. Experientia 43:234\u2013240","journal-title":"Experientia"},{"issue":"6882","key":"2202_CR10","doi-asserted-by":"publisher","first-page":"767","DOI":"10.1038\/416767a.PMID11961561.S2CID2967856","volume":"416","author":"SE Childers","year":"2002","unstructured":"Childers SE, Ciufo S, ovely DR, (2002) Geobacter metallireducens accesses insoluble Fe (III) oxide by chemotaxis. Nature 416(6882):767\u2013769. https:\/\/doi.org\/10.1038\/416767a.PMID11961561.S2CID2967856","journal-title":"Nature"},{"issue":"6","key":"2202_CR11","doi-asserted-by":"publisher","first-page":"881","DOI":"10.3390\/microorganisms8060881","volume":"8","author":"R Conrad","year":"2020","unstructured":"Conrad R (2020) Methane production in soil environments-anaerobic biogeochemistry and microbial life between flooding and desiccation. Microorganisms 8(6):881. https:\/\/doi.org\/10.3390\/microorganisms8060881","journal-title":"Microorganisms"},{"key":"2202_CR12","doi-asserted-by":"publisher","unstructured":"Conrad R, Ji Y, Noll M, Klose M, Claus P, Enrich-Prast A (2014) Response of the methanogenic microbial communities in Amazonian oxbow lake sediments to desiccation stress. Environ Microbiol 16(6):1682\u201394. https:\/\/doi.org\/10.1111\/1462-2920.12267.","DOI":"10.1111\/1462-2920.12267"},{"key":"2202_CR13","doi-asserted-by":"publisher","unstructured":"Cordeiro RC, Turcq B, Suguio K, Silva AO, Sifeddine A, Ribeiro CV (2008) Holocene fires in East Amazonia (Caraj\u00e1s), new evidences, chronology and relation with paleoclimate. Global and Planetary Change, Amsterdam 61:49\u201362. https:\/\/doi.org\/10.1016\/j.gloplacha.2007.08.005","DOI":"10.1016\/j.gloplacha.2007.08.005"},{"key":"2202_CR14","doi-asserted-by":"publisher","first-page":"1363","DOI":"10.1007\/s12665-015-4127-y","volume":"74","author":"RC Cordeiro","year":"2015","unstructured":"Cordeiro RC, Machado W, Santelli RE, Figueiredo AG Jr, Seoane JCS, Oliveira EP et al (2015) Geochemical fractionation of metals and semimetals in surface sediments from tropical impacted estuary (Guanabara Bay, Brazil). Environ Earth Sci 74:1363\u20131378. https:\/\/doi.org\/10.1007\/s12665-015-4127-y","journal-title":"Environ Earth Sci"},{"key":"2202_CR15","doi-asserted-by":"publisher","first-page":"561","DOI":"10.1007\/s12665-017-6888-y","volume":"76","author":"RC Cordeiro","year":"2017","unstructured":"Cordeiro RC, Santelli RE, Machado W, Moreira LS, Freire AS, Braz BF, Rizzini Ansari N, Bidone ED, Meniconi MFG (2017) Biogeochemical factors controlling arsenic distribution in a densely populated tropical estuary (Guanabara Bay, RJ, Brazil). Environ Earth Sci 76:561. https:\/\/doi.org\/10.1007\/s12665-017-6888-y","journal-title":"Environ Earth Sci"},{"issue":"1","key":"2202_CR16","doi-asserted-by":"publisher","first-page":"80","DOI":"10.1038\/s41598-021-03949-7","volume":"12","author":"M Custodio","year":"2022","unstructured":"Custodio M, Espinoza C, Pe\u00f1aloza R, Peralta-Ortiz T, S\u00e1nchez-Su\u00e1rez H, Ordinola-Zapata A, Vieyra-Pe\u00f1a E (2022) Microbial diversity in intensively farmed lake sediment contaminated by heavy metals and identification of microbial taxa bioindicators of environmental quality. Sci Rep 12(1):80. https:\/\/doi.org\/10.1038\/s41598-021-03949-7","journal-title":"Sci Rep"},{"issue":"8","key":"2202_CR17","doi-asserted-by":"publisher","first-page":"465","DOI":"10.1016\/j.tree.2014.06.002","volume":"29","author":"R Danovaro","year":"2014","unstructured":"Danovaro R, Snelgrove PV, Tyler P (2014) Challenging the paradigms of deep-sea ecology. Trends Ecol Evol 29(8):465\u2013475. https:\/\/doi.org\/10.1016\/j.tree.2014.06.002","journal-title":"Trends Ecol Evol"},{"issue":"642","key":"2202_CR18","doi-asserted-by":"publisher","first-page":"389","DOI":"10.1016\/j.gene.2017.11.039","volume":"5","author":"JP Fonseca","year":"2018","unstructured":"Fonseca JP, Hoffmann L, Cabral BCA, Dias VHG, Miranda MR, de Azevedo Martins AC, Boschiero C, Bastos WR, Silva R (2018) Contrasting the microbiomes from forest rhizosphere and deeper bulk soil from an Amazon rainforest reserve. Gene 5(642):389\u2013397. https:\/\/doi.org\/10.1016\/j.gene.2017.11.039","journal-title":"Gene"},{"key":"2202_CR19","doi-asserted-by":"publisher","first-page":"259","DOI":"10.1016\/S0169-555X(01)00178-7","volume":"44","author":"E Franzinelli","year":"2002","unstructured":"Franzinelli E, Igreja H (2002) Modern sedimentation in the Lower Negro River, Amazonas State, Brazil. Geomorphology 44:259\u2013271","journal-title":"Geomorphology"},{"key":"2202_CR20","doi-asserted-by":"publisher","first-page":"140904","DOI":"10.1016\/j.scitotenv.2020.140904","volume":"746","author":"L Freitas","year":"2020","unstructured":"Freitas L, Appolinario L, Calegario G, Campe\u00e3o M, Tschoeke D, Garcia G, Venancio IM, Cosenza CAN, Leomil L, Bernardes M, Albuquerque AL, Thompson C, Thompson F (2020) Glacial-interglacial transitions in microbiomes recorded in deep-sea sediments from the western equatorial Atlantic. Sci Total Environ 746:140904. https:\/\/doi.org\/10.1016\/j.scitotenv.2020.140904","journal-title":"Sci Total Environ"},{"issue":"1","key":"2202_CR21","doi-asserted-by":"publisher","first-page":"110","DOI":"10.1007\/s00248-019-01401-y","volume":"79","author":"D Goss-Souza","year":"2020","unstructured":"Goss-Souza D, Mendes LW, Rodrigues JLM, Tsai SM (2020) Ecological processes shaping bulk soil and rhizosphere microbiome assembly in a long-term amazon forest-to- agriculture conversion. Microb Ecol 79(1):110\u2013122. https:\/\/doi.org\/10.1007\/s00248-019-01401-y","journal-title":"Microb Ecol"},{"issue":"42","key":"2202_CR22","doi-asserted-by":"publisher","first-page":"E6391","DOI":"10.1073\/pnas.1601383113","volume":"113","author":"J Granger","year":"2016","unstructured":"Granger J, Wankel SD (2016) Isotopic overprinting of nitrification on denitrification as a ubiquitous and unifying feature of environmental nitrogen cycling. Proc Natl Acad Sci USA 113(42):E6391\u2013E6400. https:\/\/doi.org\/10.1073\/pnas.1601383113","journal-title":"Proc Natl Acad Sci USA"},{"issue":"5","key":"2202_CR23","doi-asserted-by":"publisher","first-page":"1702","DOI":"10.1111\/1462-2920.14535","volume":"21","author":"M Hern\u00e1ndez","year":"2019","unstructured":"Hern\u00e1ndez M, Klose M, Claus P, Bastviken D, Marotta H, Figueiredo V, Enrich-Prast A, Conrad R (2019) Structure, function and resilience to desiccation of methanogenic microbial communities in temporarily inundated soils of the Amazon rainforest (Cunia Reserve, Rondonia). Environ Microbiol 21(5):1702\u20131717. https:\/\/doi.org\/10.1111\/1462-2920.14535","journal-title":"Environ Microbiol"},{"key":"2202_CR24","doi-asserted-by":"publisher","unstructured":"Jin CZ, Jin L, Kang DH, Liu MJ, Lee JM, Park DJ, Kim CJ (2022) Description of desferrioxamine-producing bacterium Chitinophaga agrisoli sp. nov., isolated from soil. Antonie Van Leeuwenhoek. 114(6):741\u2013750. https:\/\/doi.org\/10.1007\/s10482-021-01554-2. Epub 2021 Mar 10. Erratum in: Antonie Van Leeuwenhoek. 115(6):839\u2013840","DOI":"10.1007\/s10482-021-01554-2"},{"issue":"2","key":"2202_CR25","doi-asserted-by":"publisher","first-page":"230","DOI":"10.1093\/femsec\/fiy230","volume":"95","author":"MAW Khan","year":"2019","unstructured":"Khan MAW, Bohannan BJM, N\u00fcsslein K, Tiedje JM, Tringe SG, Parlade E, Barber\u00e1n A, Rodrigues JLM (2019) Deforestation impacts network co-occurrence patterns of microbial communities in Amazon soils. FEMS Microbiol Ecol 95(2):230. https:\/\/doi.org\/10.1093\/femsec\/fiy230","journal-title":"FEMS Microbiol Ecol"},{"issue":"6658","key":"2202_CR26","doi-asserted-by":"publisher","first-page":"364","DOI":"10.1038\/37052","volume":"390","author":"HP Klenk","year":"1997","unstructured":"Klenk HP, Clayton RA, Tomb JF, White O, Nelson KE, Ketchum KA, Dodson RJ, Gwinn M, Hickey EK, Peterson JD, Richardson DL, Kerlavage AR, Graham DE, Kyrpides NC, Fleischmann RD, Quackenbush J, Lee NH, Sutton GG, Gill S, Kirkness EF, Dougherty BA, McKenney K, Adams MD, Loftus B, Peterson S, Reich CI, McNeil LK, Badger JH, Glodek A, Zhou L, Overbeek R, Gocayne JD, Weidman JF, McDonald L, Utterback T, Cotton MD, Spriggs T, Artiach P, Kaine BP, Sykes SM, Sadow PW, D\u2019Andrea KP, Bowman C, Fujii C, Garland SA, Mason TM, Olsen GJ, Fraser CM, Smith HO, Woese CR, Venter JC (1997) The complete genome sequence of the hyperthermophilic, sulphate-reducing archaeon Archaeoglobus fulgidus. Nature 390(6658):364\u2013370. https:\/\/doi.org\/10.1038\/37052","journal-title":"Nature"},{"key":"2202_CR27","doi-asserted-by":"publisher","unstructured":"Kumar S, Schmitt C, Gorgette O, Marbouty M, Duchateau M, Giai Gianetto Q, Matondo M, Guigner JM, De Reuse H (2022a) Bacterial membrane vesicles as a novel strategy for extrusion of antimicrobial bismuth drug in Helicobacter pylori. mBio 13(5):0163322. https:\/\/doi.org\/10.1128\/mbio.01633-22","DOI":"10.1128\/mbio.01633-22"},{"key":"2202_CR28","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1016\/bs.ampbs.2022.01.001","volume":"80","author":"S Kumar","year":"2022","unstructured":"Kumar S, Vinella D, De Reuse H (2022b) Nickel, an essential virulence determinant of Helicobacter pylori: transport and trafficking pathways and their targeting by bismuth. Adv Microb Physiol 80:1\u201333. https:\/\/doi.org\/10.1016\/bs.ampbs.2022.01.001","journal-title":"Adv Microb Physiol"},{"key":"2202_CR29","doi-asserted-by":"crossref","unstructured":"Latrubesse EM, Franzinelli E (2005) The late Quaternary evolution of the Negro River, Amazon, Brazil: implications for island and floodplain formation in large anabranching tropical systems. Geomorphology (Amstrerdam) 70:372\u2013397","DOI":"10.1016\/j.geomorph.2005.02.014"},{"issue":"6145","key":"2202_CR30","doi-asserted-by":"publisher","first-page":"252","DOI":"10.1038\/330252a0.S2CID4234140","volume":"350","author":"DR Lovely","year":"1987","unstructured":"Lovely DR, Stolz JF, Nord GL, Phillips EJP (1987) Anaerobic production of magnetite by a dissimilatory iron-reducing microorganism (PDF). Nature 350(6145):252\u2013254. https:\/\/doi.org\/10.1038\/330252a0.S2CID4234140","journal-title":"Nature"},{"issue":"9","key":"2202_CR31","doi-asserted-by":"publisher","first-page":"386","DOI":"10.1186\/1471-2105-9-386","volume":"19","author":"F Meyer","year":"2008","unstructured":"Meyer F, Paarmann D, D\u2019Souza M, Olson R, Glass EM, Kubal M, Paczian T, Rodriguez A, Stevens R, Wilke A, Wilkening J, Edwards RA (2008) The metagenomics RAST server \u2013 a public resource for the automatic phylogenetic and functional analysis of metagenomes. BMC Bioinformatics 19(9):386. https:\/\/doi.org\/10.1186\/1471-2105-9-386","journal-title":"BMC Bioinformatics"},{"issue":"10","key":"2202_CR32","doi-asserted-by":"publisher","first-page":"e00195","DOI":"10.1128\/AEM.00195-20","volume":"86","author":"BS Mirza","year":"2020","unstructured":"Mirza BS, McGlinn DJ, Bohannan BJM, N\u00fcsslein K, Tiedje JM, Rodrigues JLM (2020) Diazotrophs show signs of restoration in Amazon Rain Forest soils with ecosystem rehabilitation. Appl Environ Microbiol 86(10):e00195-e220. https:\/\/doi.org\/10.1128\/AEM.00195-20","journal-title":"Appl Environ Microbiol"},{"issue":"6","key":"2202_CR33","doi-asserted-by":"publisher","first-page":"651","DOI":"10.1111\/1758-2229.12880","volume":"12","author":"L NascimentoLemos","year":"2020","unstructured":"NascimentoLemos L, Manoharan L, William Mendes L, Monteiro Venturini A, SatlerPylro V,\u00a0Tsai SM (2020) Metagenome assembled-genomes reveal similar functional profiles of CPR\/Patescibacteria phyla in soils. Environ Microbiol Rep 12(6):651\u2013655. https:\/\/doi.org\/10.1111\/1758-2229.12880","journal-title":"Environ Microbiol Rep"},{"issue":"10","key":"2202_CR34","doi-asserted-by":"publisher","first-page":"2433","DOI":"10.1111\/mec.13172","volume":"24","author":"AA Navarrete","year":"2015","unstructured":"Navarrete AA, Tsai SM, Mendes LW, Faust K, de Hollander M, Cassman NA, Raes J, van Veen JA (2015) Kuramae EE (2015) Soil microbiome responses to the short-term effects of Amazonian deforestation. Mol Ecol 24(10):2433\u20132448. https:\/\/doi.org\/10.1111\/mec.13172","journal-title":"Mol Ecol"},{"key":"2202_CR35","doi-asserted-by":"publisher","first-page":"824","DOI":"10.1101\/gr.213959.116","volume":"27","author":"S Nurk","year":"2017","unstructured":"Nurk S, Meleshko D, Korobeynikov A, Pevzner PA (2017) MetaSPAdes: a new versatile metagenomic assembler. Genome Res 27:824\u2013834","journal-title":"Genome Res"},{"key":"2202_CR36","doi-asserted-by":"publisher","unstructured":"Pankratov TA, Tindall BJ, Liesack W, Dedysh SN (2007) Mucilaginibacter paludis gen. nov., sp. nov. and Mucilaginibacter gracilis sp. nov., pectin-, xylan- and laminarin-degrading members of the family Sphingobacteriaceae from acidic Sphagnum peat bog. Int J Syst Evol Microbiol 57(Pt 10):2349\u20132354. https:\/\/doi.org\/10.1099\/ijs.0.65100-0. Erratum in: Int J Syst Evol Microbiol. 2007;57(Pt12):2979","DOI":"10.1099\/ijs.0.65100-0"},{"key":"2202_CR37","doi-asserted-by":"publisher","first-page":"1043","DOI":"10.1101\/gr.186072.114","volume":"25","author":"DH Parks","year":"2015","unstructured":"Parks DH, Imelfort M, Skennerton CT, Hugenholtz P, Tyson GW (2015) CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes. Genome Res 25:1043\u20131055","journal-title":"Genome Res"},{"issue":"3","key":"2202_CR38","doi-asserted-by":"publisher","first-page":"236","DOI":"10.1093\/femsec\/fiy236","volume":"95","author":"A Pedrinho","year":"2019","unstructured":"Pedrinho A, Mendes LW, Merloti LF, da Fonseca MC, Cannavan FS, Tsai SM (2019) Forest-to-pasture conversion and recovery based on assessment of microbial communities in Eastern Amazon rainforest. FEMS Microbiol Ecol 95(3):236. https:\/\/doi.org\/10.1093\/femsec\/fiy236","journal-title":"FEMS Microbiol Ecol"},{"issue":"1","key":"2202_CR39","doi-asserted-by":"publisher","first-page":"108","DOI":"10.1186\/s40168-021-01047-4.PMID:33990222;PMCID:PMC8122544","volume":"9","author":"X Qian","year":"2021","unstructured":"Qian X, Gunturu S, Guo J, Chai B, Cole JR, Gu J,\u00a0Tiedje JM (2021) Metagenomic analysis reveals the shared and distinct features of the sediment resistome across tundra, temperate prairie, and tropical ecosystems. Microbiome 9(1):108. \nhttps:\/\/doi.org\/10.1186\/s40168-021-01047-4","journal-title":"Microbiome"},{"key":"2202_CR40","first-page":"25","volume":"1","author":"A Ribeiro","year":"1996","unstructured":"Ribeiro A, Villa NA, Lu N et al (1996) An\u00e1lise do regime pluviom\u00e9trico da regi\u00e3o Amaz\u00f4nica a partir de dados de onze localidades. Rev Bras Meteorol 1:25\u201335","journal-title":"Rev Bras Meteorol"},{"issue":"7","key":"2202_CR41","doi-asserted-by":"publisher","first-page":"11840","DOI":"10.1371\/journal.pone.0011840","volume":"5","author":"S Rodrigue","year":"2010","unstructured":"Rodrigue S, Materna AC, Timberlake SC, Blackburn MC, Malmstrom RR, Alm EJ et al (2010) Unlocking short read sequencing for metagenomics. PloS One 5(7):11840. https:\/\/doi.org\/10.1371\/journal.pone.0011840","journal-title":"PloS One"},{"key":"2202_CR42","doi-asserted-by":"publisher","first-page":"863","DOI":"10.1093\/bioinformatics\/btr026","volume":"27","author":"R Schmieder","year":"2011","unstructured":"Schmieder R, Edwards R (2011) Quality control and preprocessing of metagenomic datasets. Bioinformatics 27:863\u2013864","journal-title":"Bioinformatics"},{"issue":"2","key":"2202_CR43","doi-asserted-by":"publisher","first-page":"182","DOI":"10.1111\/j.1574-6976.2012.00346.x","volume":"37","author":"GJ Schut","year":"2013","unstructured":"Schut GJ, Boyd ES, Peters JW, Adams MW (2013) The modular respiratory complexes involved in hydrogen and sulfur metabolism by heterotrophic hyperthermophilic archaea and their evolutionary implications. FEMS Microbiol Rev 37(2):182\u2013203. https:\/\/doi.org\/10.1111\/j.1574-6976.2012.00346.x","journal-title":"FEMS Microbiol Rev"},{"key":"2202_CR44","doi-asserted-by":"publisher","unstructured":"Seyler and Boaventura (2003) Distribution and partition of trace metals in the Amazon basin. Hydrol Process. https:\/\/doi.org\/10.1002\/hyp.1288","DOI":"10.1002\/hyp.1288"},{"key":"2202_CR45","doi-asserted-by":"publisher","first-page":"1041","DOI":"10.1017\/S0033822200019123","volume":"40","author":"M Stuiver","year":"1998","unstructured":"Stuiver M, Reimer PJ, Bard E, Beck JW, Burr GS, Hughen KA, Kromer B, McCormac FGV, Der Plight J, SPURK, M (1998) INTCAL98 radiocarbon age calibration, 24,000\u20130 cal AD. Radiocarbon 40:1041\u20131083","journal-title":"Radiocarbon"},{"key":"2202_CR46","doi-asserted-by":"publisher","first-page":"53","DOI":"10.1111\/j.1365-2427.1985.tb00696.x","volume":"15","author":"EB Swain","year":"1985","unstructured":"Swain EB (1985) Measurement and interpretation of sedimentary pigments. Freshw Biol 15:53\u201375","journal-title":"Freshw Biol"},{"issue":"4","key":"2202_CR47","doi-asserted-by":"publisher","first-page":"693","DOI":"10.1007\/s10933-012-9593-6","volume":"47","author":"IC Torres","year":"2012","unstructured":"Torres IC, Inglett PW, Brenner M, Kenney WF, Reddy KR (2012) Stable isotope (\u03b4 13C and \u03b4 15N) values of sediment organic matter in subtropical lakes of different trophic status. J Paleolimnol 47(4):693\u2013706. https:\/\/doi.org\/10.1007\/s10933-012-9593-6","journal-title":"J Paleolimnol"},{"key":"2202_CR48","doi-asserted-by":"publisher","first-page":"100789","DOI":"10.1016\/j.margen.2020.100789","volume":"54","author":"DA Tschoeke","year":"2020","unstructured":"Tschoeke DA, Coutinho FH, Leomil L, Cavalcanti G, Silva BS, Garcia GD, Dos Anjos LC, Nascimento LB, Moreira LS, Otsuki K, Cordeiro RC, Rezende CE, Thompson FL, Thompson CC (2020) New bacterial and archaeal lineages discovered in organic rich sediments of a large tropical Bay. Mar Genomics 54:100789. https:\/\/doi.org\/10.1016\/j.margen.2020.100789","journal-title":"Mar Genomics"},{"issue":"3","key":"2202_CR49","doi-asserted-by":"publisher","first-page":"327","DOI":"10.4056\/sigs.942153","volume":"2","author":"M von Jan","year":"2010","unstructured":"von Jan M, Lapidus A, Del Rio TG, Copeland A, Tice H, Cheng JF, Lucas S, Chen F, Nolan M, Goodwin L, Han C, Pitluck S, Liolios K, Ivanova N, Mavromatis K, Ovchinnikova G, Chertkov O, Pati A, Chen A, Palaniappan K, Land M, Hauser L, Chang YJ, Jeffries CD, Saunders E, Brettin T, Detter JC, Chain P, Eichinger K, Huber H, Spring S, Rohde M, G\u00f6ker M, Wirth R, Woyke T, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP (2010) Complete genome sequence of Archaeoglobus profundus type strain (AV18). Stand Genomic Sci 2(3):327\u2013346. https:\/\/doi.org\/10.4056\/sigs.942153","journal-title":"Stand Genomic Sci"}],"container-title":["Microbial Ecology"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/link.springer.com\/content\/pdf\/10.1007\/s00248-023-02202-0.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/link.springer.com\/article\/10.1007\/s00248-023-02202-0\/fulltext.html","content-type":"text\/html","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/link.springer.com\/content\/pdf\/10.1007\/s00248-023-02202-0.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2023,9,12]],"date-time":"2023-09-12T09:09:19Z","timestamp":1694509759000},"score":1,"resource":{"primary":{"URL":"https:\/\/link.springer.com\/10.1007\/s00248-023-02202-0"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2023,4,5]]},"references-count":49,"journal-issue":{"issue":"3","published-print":{"date-parts":[[2023,10]]}},"alternative-id":["2202"],"URL":"https:\/\/doi.org\/10.1007\/s00248-023-02202-0","relation":{},"ISSN":["0095-3628","1432-184X"],"issn-type":[{"value":"0095-3628","type":"print"},{"value":"1432-184X","type":"electronic"}],"subject":[],"published":{"date-parts":[[2023,4,5]]},"assertion":[{"value":"8 September 2022","order":1,"name":"received","label":"Received","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"23 February 2023","order":2,"name":"accepted","label":"Accepted","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"5 April 2023","order":3,"name":"first_online","label":"First Online","group":{"name":"ArticleHistory","label":"Article History"}},{"order":1,"name":"Ethics","group":{"name":"EthicsHeading","label":"Declarations"}},{"value":"The authors declare no competing interests.","order":2,"name":"Ethics","group":{"name":"EthicsHeading","label":"Conflict of Interest"}}]}}