{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,10,9]],"date-time":"2026-10-09T07:53:41Z","timestamp":1791532421917,"version":"4.3.4"},"reference-count":73,"publisher":"Springer Science and Business Media LLC","issue":"4","license":[{"start":{"date-parts":[[2023,7,1]],"date-time":"2023-07-01T00:00:00Z","timestamp":1688169600000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/creativecommons.org\/licenses\/by\/4.0"},{"start":{"date-parts":[[2023,7,1]],"date-time":"2023-07-01T00:00:00Z","timestamp":1688169600000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/creativecommons.org\/licenses\/by\/4.0"}],"content-domain":{"domain":["link.springer.com"],"crossmark-restriction":false},"short-container-title":["Microb Ecol"],"published-print":{"date-parts":[[2023,11]]},"abstract":"<jats:sec>\n                <jats:title>Abstract<\/jats:title>\n                <jats:p>Agricultural crops are exposed to various abiotic and biotic stresses that can constrain crop productivity. Focusing on a limited subset of key groups of organisms has the potential to facilitate the monitoring of the functions of human-managed ecosystems. Endophytic bacteria can enhance plant stress resistance and can help plants to cope with the negative impacts of stress factors through the induction of different mechanisms, influencing plant biochemistry and physiology. In this study, we characterise endophytic bacteria isolated from different plants based on their metabolic activity and ability to synthesise 1-aminocyclopropane-1-carboxylic acid deaminase (ACCD), the activity of hydrolytic exoenzymes, the total phenolic compounds (TPC) and iron-complexing compounds (ICC). Test GEN III MicroPlate indicated that the evaluated endophytes are highly metabolically active, and the best used substrates were amino acids, which may be important in selecting potential carrier components for bacteria in biopreparations. The ACCD activity of strain ES2 (<jats:italic>Stenotrophomonas maltophilia<\/jats:italic>) was the highest, whereas that of strain ZR5 (<jats:italic>Delftia acidovorans<\/jats:italic>) was the lowest. Overall, the obtained results indicated that \u223c91.3% of the isolates were capable of producing at least one of the four hydrolytic enzymes. In addition, most of the tested strains produced ICC and TPC, which play a significant role in reducing stress in plants. The results of this study suggest that the tested endophytic bacterial strains can potentially be used to mitigate climate change-associated stresses in plants and to inhibit plant pathogens.<\/jats:p>\n              <\/jats:sec><jats:sec>\n                <jats:title>Graphical Abstract<\/jats:title>\n                \n              <\/jats:sec>","DOI":"10.1007\/s00248-023-02260-4","type":"journal-article","created":{"date-parts":[[2023,7,1]],"date-time":"2023-07-01T14:02:01Z","timestamp":1688220121000},"page":"2527-2540","update-policy":"https:\/\/doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":18,"title":["Metabolic Profiling of Endophytic Bacteria in Relation to Their Potential Application as Components of Multi-Task Biopreparations"],"prefix":"10.1007","volume":"86","author":[{"ORCID":"https:\/\/orcid.org\/0000-0001-9092-6816","authenticated-orcid":false,"given":"Ma\u0142gorzata","family":"Wo\u017aniak","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-8927-7916","authenticated-orcid":false,"given":"Renata","family":"Ty\u015bkiewicz","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-9516-1939","authenticated-orcid":false,"given":"Sylwia","family":"Siebielec","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-5504-5706","authenticated-orcid":false,"given":"Anna","family":"Ga\u0142\u0105zka","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-9861-5772","authenticated-orcid":false,"given":"Jolanta","family":"Jaroszuk-\u015acise\u0142","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"297","published-online":{"date-parts":[[2023,7,1]]},"reference":[{"key":"2260_CR1","doi-asserted-by":"publisher","first-page":"4377","DOI":"10.1016\/j.engappai.2022.105210","volume":"45","author":"P Kaur","year":"2021","unstructured":"Kaur P, Gautam V (2021) Research patterns and trends in classification of biotic and abiotic stress in plant leaf. Mater Today: Proc 45:4377\u20134382. https:\/\/doi.org\/10.1016\/j.engappai.2022.105210","journal-title":"Mater Today: Proc"},{"key":"2260_CR2","unstructured":"Food and Agriculture Organization of the United Nations.\u00a0https:\/\/www.fao.org\/3\/i6583e\/i6583e.pdf (accessed 13 Feb 2023)"},{"key":"2260_CR3","doi-asserted-by":"publisher","first-page":"71","DOI":"10.1007\/978-981-13-6830-1_3","volume-title":"Sustainable Agriculture, Forest and Environmental Management","author":"SO Oshunsanya","year":"2019","unstructured":"Oshunsanya SO, Nwosu NJ, Li Y (2019) Abiotic stress in agricultural crops under climatic conditions. In: Jhariya M, Banerjee A, Meena R, Yadav D (eds) Sustainable Agriculture, Forest and Environmental Management. Springer, Singapore, pp 71\u2013100. https:\/\/doi.org\/10.1007\/978-981-13-6830-1_3"},{"key":"2260_CR4","doi-asserted-by":"publisher","first-page":"239","DOI":"10.1046\/j.0016-8025.2001.00808.x","volume":"25","author":"R Munns","year":"2002","unstructured":"Munns R (2002) Comparative physiology of salt and water stress. Plant Cell Environ 25:239\u2013250. https:\/\/doi.org\/10.1046\/j.0016-8025.2001.00808.x","journal-title":"Plant Cell Environ"},{"issue":"3","key":"2260_CR5","doi-asserted-by":"publisher","first-page":"430","DOI":"10.1038\/s41559-018-0793-y","volume":"3","author":"S Savary","year":"2019","unstructured":"Savary S, Willocquet L, Pethybridge SJ, Esker P, McRoberts N, Nelson A (2019) The global burden of pathogens and pests on major food crops. Nat Ecol Evol 3(3):430\u2013439. https:\/\/doi.org\/10.1038\/s41559-018-0793-y","journal-title":"Nat Ecol Evol"},{"key":"2260_CR6","doi-asserted-by":"publisher","unstructured":"Singh BK, Delgado-Baquerizo M, Egidi E, Guirado E, Leach JE, Liu H, Trivedi P (2023) Climate change impacts on plant pathogens, food security and paths forward. Nat Rev Microbiol:1\u201317. https:\/\/doi.org\/10.1038\/s41579-023-00900-7","DOI":"10.1038\/s41579-023-00900-7"},{"issue":"5","key":"2260_CR7","doi-asserted-by":"publisher","first-page":"440","DOI":"10.3390\/insects12050440","volume":"12","author":"S Skend\u017ei\u0107","year":"2021","unstructured":"Skend\u017ei\u0107 S, Zovko M, \u017divkovi\u0107 IP, Le\u0161i\u0107 V, Lemi\u0107 D (2021) The impact of climate change on agricultural insect pests. Insects 12(5):440. https:\/\/doi.org\/10.3390\/insects12050440","journal-title":"Insects"},{"key":"2260_CR8","doi-asserted-by":"publisher","first-page":"05018010","DOI":"10.1061\/(ASCE)NH.1527-6996.0000312","volume":"20","author":"Y Yihdego","year":"2019","unstructured":"Yihdego Y, Salem HS, Muhammed HH (2019) Agricultural pest management policies during drought: case studies in Australia and the state of Palestine. Nat Hazards Rev 20:05018010. https:\/\/doi.org\/10.1061\/(ASCE)NH.1527-6996.0000312","journal-title":"Nat Hazards Rev"},{"key":"2260_CR9","doi-asserted-by":"publisher","first-page":"1216","DOI":"10.3389\/fmicb.2020.01216","volume":"11","author":"A Kumar","year":"2020","unstructured":"Kumar A, Singh S, Gaurav AK, Srivastava S, Verma JP (2020) Plant growth-promoting bacteria: biological tools for the mitigation of salinity stress in plants. Front Microbiol 11:1216. https:\/\/doi.org\/10.3389\/fmicb.2020.01216","journal-title":"Front Microbiol"},{"key":"2260_CR10","doi-asserted-by":"publisher","first-page":"547","DOI":"10.1017\/S0021859618000618","volume":"156","author":"M Wo\u017aniak","year":"2018","unstructured":"Wo\u017aniak M, Ga\u0142\u0105zka A, Grz\u0105dziel J, G\u0142odowska M (2018) The identification and genetic diversity of endophytic bacteria isolated from selected crops. J Agric Sci 156:547\u2013556. https:\/\/doi.org\/10.1017\/S0021859618000618","journal-title":"J Agric Sci"},{"key":"2260_CR11","doi-asserted-by":"publisher","first-page":"29","DOI":"10.1016\/j.jare.2019.03.004","volume":"19","author":"S Compant","year":"2019","unstructured":"Compant S, Samad A, Faist H, Sessitsch A (2019) A review on the plant microbiome: ecology. Functions and emerging trends in microbial application. J Adv Res 19:29\u201337. https:\/\/doi.org\/10.1016\/j.jare.2019.03.004","journal-title":"J Adv Res"},{"key":"2260_CR12","doi-asserted-by":"publisher","first-page":"4392","DOI":"10.3389\/fmicb.2021.829099","volume":"12","author":"AE Fadiji","year":"2022","unstructured":"Fadiji AE, Babalola OO, Santoyo G, Perazzolli M (2022) The potential role of microbial biostimulants in the amelioration of climate change-associated abiotic stresses on crops. Front Microbiol 12:4392. https:\/\/doi.org\/10.3389\/fmicb.2021.829099","journal-title":"Front Microbiol"},{"key":"2260_CR13","doi-asserted-by":"publisher","first-page":"1506","DOI":"10.3389\/fmicb.2019.01506","volume":"10","author":"S Gupta","year":"2019","unstructured":"Gupta S, Pandey S (2019) ACC deaminase producing bacteria with multifarious plant growth promoting traits alleviates salinity stress in French bean (Phaseolus vulgaris) plants. Front Microbiol 10:1506. https:\/\/doi.org\/10.3389\/fmicb.2019.01506","journal-title":"Front Microbiol"},{"issue":"4","key":"2260_CR14","doi-asserted-by":"publisher","first-page":"2329","DOI":"10.3390\/ijms23042329","volume":"23","author":"R Ty\u015bkiewicz","year":"2022","unstructured":"Ty\u015bkiewicz R, Nowak A, Ozimek E, Jaroszuk-\u015acise\u0142 J (2022) Trichoderma: the current status of its application in agriculture for the biocontrol of fungal phytopathogens and stimulation of plant growth. Int J Mol Sci 23(4):2329. https:\/\/doi.org\/10.3390\/ijms23042329","journal-title":"Int J Mol Sci"},{"key":"2260_CR15","doi-asserted-by":"publisher","first-page":"126439","DOI":"10.1016\/j.micres.2020.126439","volume":"235","author":"M Orozco-Mosqueda","year":"2020","unstructured":"Orozco-Mosqueda M, Glick BR, Santoyo G (2020) ACC deaminase in plant growth-promoting bacteria (PGPB): an efficient mechanism to counter salt stress in crops. Microbiol Res 235:126439. https:\/\/doi.org\/10.1016\/j.micres.2020.126439","journal-title":"Microbiol Res"},{"issue":"3","key":"2260_CR16","doi-asserted-by":"publisher","first-page":"248","DOI":"10.1080\/17429145.2011.637161","volume":"7","author":"B El-Deeb","year":"2012","unstructured":"El-Deeb B, Bazaid S, Gherbawy Y, Elhariry H (2012) Characterization of endophytic bacteria associated with rose plant (Rosa damascena trigintipeta) during flowering stage and their plant growth promoting traits. J Plant Interact 7(3):248\u2013253. https:\/\/doi.org\/10.1080\/17429145.2011.637161","journal-title":"J Plant Interact"},{"issue":"1","key":"2260_CR17","doi-asserted-by":"publisher","first-page":"1","DOI":"10.21608\/JMR.2019.15748.1008","volume":"2","author":"HM Farouk","year":"2020","unstructured":"Farouk HM, Attia EZ, El-Katatny MMH (2020) Hydrolytic enzyme production of endophytic fungi isolated from soybean (Glycine max). Int J Curr Res 2(1):1\u20137. https:\/\/doi.org\/10.21608\/JMR.2019.15748.1008","journal-title":"Int J Curr Res"},{"issue":"5","key":"2260_CR18","doi-asserted-by":"publisher","first-page":"00070","DOI":"10.15406\/mojcsr.2016.03.00070","volume":"3","author":"HP Jadhav","year":"2016","unstructured":"Jadhav HP, Sayyed RZ (2016) Hydrolytic enzymes of rhizospheric microbes in crop protection. MOJ Cell Sci Rep 3(5):00070. https:\/\/doi.org\/10.15406\/mojcsr.2016.03.00070","journal-title":"MOJ Cell Sci Rep"},{"key":"2260_CR19","doi-asserted-by":"publisher","first-page":"163","DOI":"10.1007\/s12223-012-0184-8","volume":"58","author":"P Phitsuwan","year":"2013","unstructured":"Phitsuwan P, Laohakunjit N, Kerdchoechuen O, Kyu KL, Ratanakhanokchai K (2013) Present and potential applications of cellulases in agriculture, biotechnology, and bioenergy. Folia Microbiol 58:163\u2013176. https:\/\/doi.org\/10.1007\/s12223-012-0184-8","journal-title":"Folia Microbiol"},{"issue":"5","key":"2260_CR20","doi-asserted-by":"publisher","first-page":"7","DOI":"10.7324\/JABB.2019.7050","volume":"7","author":"R Maheshwari","year":"2019","unstructured":"Maheshwari R, Bhutani N, Suneja P (2019) Screening and characterization of siderophore producing endophytic bacteria from Cicer arietinum and Pisum sativum plants. J Appl Biol 7(5):7\u20134. https:\/\/doi.org\/10.7324\/JABB.2019.7050","journal-title":"J Appl Biol"},{"issue":"1","key":"2260_CR21","doi-asserted-by":"publisher","first-page":"59","DOI":"10.21307\/PM-2019.58.1.059","volume":"58","author":"M Wo\u017aniak","year":"2019","unstructured":"Wo\u017aniak M, Ga\u0142\u0105zka A (2019) The rhizosphere microbiome and its beneficial effects on plants\u2013current knowledge and perspectives. Post\u0119py Mikrobiologii 58(1):59\u201369. https:\/\/doi.org\/10.21307\/PM-2019.58.1.059","journal-title":"Post\u0119py Mikrobiologii"},{"key":"2260_CR22","doi-asserted-by":"publisher","DOI":"10.1007\/978-981-15-4890-1_22","volume-title":"Plant Phenolics in Sustainable Agriculture","author":"S Kumar","year":"2020","unstructured":"Kumar S, Abedin MM, Singh AK, Das S (2020b) Role of phenolic compounds in plant-defensive mechanisms. In: Lone R, Shuab R, Kamili A (eds) Plant Phenolics in Sustainable Agriculture. Springer, Singapore. https:\/\/doi.org\/10.1007\/978-981-15-4890-1_22"},{"key":"2260_CR23","doi-asserted-by":"publisher","unstructured":"Said KAM, Ismail AF, Karim ZA, Abdullah M. S, Hafeez A (2021) A review of technologies for the phenolic compounds recovery and phenol removal from wastewater. Process Saf Environ Prot 151:257\u2013 289.\u00a0https:\/\/doi.org\/10.1016\/j.psep.2021.05.015.","DOI":"10.1016\/j.psep.2021.05.015"},{"issue":"4","key":"2260_CR24","doi-asserted-by":"publisher","first-page":"259","DOI":"10.2174\/1389557515666151016123923","volume":"16","author":"P de Carvalho","year":"2016","unstructured":"de Carvalho P, de Oliveira SE, Aparecida Chagas-Paula D, Honorata Hortolan Luiz J, Ikegaki M (2016) Importance and implications of the production of phenolic secondary metabolites by endophytic fungi: a mini-review. Mini Rev Med Chem 16(4):259\u2013271. https:\/\/doi.org\/10.2174\/1389557515666151016123923","journal-title":"Mini Rev Med Chem"},{"key":"2260_CR25","doi-asserted-by":"publisher","first-page":"2742","DOI":"10.1002\/jsfa.10306","volume":"100","author":"A Jim\u00e9nez-G\u00f3mez","year":"2020","unstructured":"Jim\u00e9nez-G\u00f3mez A, Garc\u00eda-Est\u00e9vez I, Garc\u00eda-Fraile P, Escribano-Bail\u00f3n MT, Rivas R (2020) Increase in phenolic compounds of Coriandrum sativum L. after the application of a Bacillus halotolerans biofertilizer. J Sci Food Agric 100:2742\u20132749. https:\/\/doi.org\/10.1002\/jsfa.10306","journal-title":"J Sci Food Agric"},{"key":"2260_CR26","doi-asserted-by":"publisher","first-page":"5283","DOI":"10.3390\/ijms20215283","volume":"20","author":"M Wo\u017aniak","year":"2019","unstructured":"Wo\u017aniak M, Ga\u0142\u0105zka A, Ty\u015bkiewicz R, Jaroszuk-\u015acise\u0142 J (2019) Endophytic bacteria potentially promote plant growth by synthesizing different metabolites and their phenotypic\/physiological profiles in the Biolog GEN III MicroPlateTM test. Int J Mol Sci 20:5283. https:\/\/doi.org\/10.3390\/ijms20215283","journal-title":"Int J Mol Sci"},{"key":"2260_CR27","doi-asserted-by":"publisher","first-page":"71","DOI":"10.1007\/BF03263298","volume":"18","author":"V Govindasamy","year":"2009","unstructured":"Govindasamy V, Senthilkumar M, Mageshwaran V, Annapurna K (2009) Detection and characterization of ACC deaminase in plant growth promoting rhizobacteria. J Plant Biochem Biotechnol 18:71\u201376. https:\/\/doi.org\/10.1007\/BF03263298","journal-title":"J Plant Biochem Biotechnol"},{"issue":"5","key":"2260_CR28","doi-asserted-by":"publisher","first-page":"592","DOI":"10.1128\/jb.75.5.592-603.1958","volume":"75","author":"M Dworkin","year":"1958","unstructured":"Dworkin M, Foster J (1958) Experiments with some microorganisms which utilize ethane and hydrogen. J Bacteriol Res 75(5):592\u2013603. https:\/\/doi.org\/10.1128\/jb.75.5.592-603.1958","journal-title":"J Bacteriol Res"},{"issue":"1","key":"2260_CR29","doi-asserted-by":"publisher","first-page":"10","DOI":"10.1034\/j.1399-3054.2003.00086.x","volume":"118","author":"DM Penrose","year":"2003","unstructured":"Penrose DM, Glick BR (2003) Methods for isolating and characterizing ACC deaminase-containing plant growth-promoting rhizobacteria. Physiol Plant 118(1):10\u201315. https:\/\/doi.org\/10.1034\/j.1399-3054.2003.00086.x","journal-title":"Physiol Plant"},{"issue":"2","key":"2260_CR30","doi-asserted-by":"publisher","first-page":"e2308","DOI":"10.30498\/IJB.2020.137279.2308","volume":"18","author":"R Maheshwari","year":"2020","unstructured":"Maheshwari R, Bhutani N, Suneja P (2020) Isolation and characterization of ACC deaminase producing endophytic Bacillus mojavensis PRN2 from Pisum sativum. Iran J Biotechno 18(2):e2308. https:\/\/doi.org\/10.30498\/IJB.2020.137279.2308","journal-title":"Iran J Biotechno"},{"key":"2260_CR31","doi-asserted-by":"publisher","first-page":"248","DOI":"10.1016\/0003-2697(76)90527-3","volume":"72","author":"MM Bradford","year":"1976","unstructured":"Bradford MM (1976) A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Anal Biochem 72:248\u2013254. https:\/\/doi.org\/10.1016\/0003-2697(76)90527-3","journal-title":"Anal Biochem"},{"key":"2260_CR32","doi-asserted-by":"publisher","first-page":"16","DOI":"10.1016\/j.enzmictec.2014.07.004","volume":"66","author":"F Meddeb-Mouelhi","year":"2014","unstructured":"Meddeb-Mouelhi F, Moisan JK, Beauregard M (2014) A comparison of plate assay methods for detecting extracellular cellulase and xylanase activity. Enzyme Microb Technol 66:16\u201319. https:\/\/doi.org\/10.1016\/j.enzmictec.2014.07.004","journal-title":"Enzyme Microb Technol"},{"key":"2260_CR33","doi-asserted-by":"publisher","first-page":"114","DOI":"10.1016\/j.btre.2017.07.004","volume":"15","author":"L Ramnath","year":"2017","unstructured":"Ramnath L, Sithole B, Govinden R (2017) Identification of lipolytic enzymes isolated from bacteria indigenous to Eucalyptus wood species for application in the pulping industry. Biotechnol Rep 15:114\u2013124. https:\/\/doi.org\/10.1016\/j.btre.2017.07.004","journal-title":"Biotechnol Rep"},{"key":"2260_CR34","doi-asserted-by":"publisher","first-page":"152","DOI":"10.1016\/S0076-6879(99)99017-1","volume":"299","author":"VL Singleton","year":"1999","unstructured":"Singleton VL, Orthofer R, Lamuela-Ravent\u00f3s RM (1999) Analysis of total phenols and other oxidation substrates and antioxidants by means of Folin-Ciocalteu reagent. Methods Enzymol 299:152\u2013178. https:\/\/doi.org\/10.1016\/S0076-6879(99)99017-1","journal-title":"Methods Enzymol"},{"key":"2260_CR35","doi-asserted-by":"publisher","first-page":"47","DOI":"10.1016\/0003-2697(87)90612-9","volume":"160","author":"B Schwyn","year":"1987","unstructured":"Schwyn B, Neilands JB (1987) Universal chemical assay for the detection and determination of siderophores. Anal Biochem 160:47\u201356. https:\/\/doi.org\/10.1016\/0003-2697(87)90612-9","journal-title":"Anal Biochem"},{"key":"2260_CR36","doi-asserted-by":"publisher","first-page":"198","DOI":"10.3389\/fmicb.2015.00198","volume":"6","author":"A Majeed","year":"2015","unstructured":"Majeed A, Abbasi MK, Hameed S, Imran A, Rahim N (2015) Isolation and characterization of plant growth-promoting rhizobacteria from wheat rhizosphere and their effect on plant growth promotion. Front Microbiol 6:198. https:\/\/doi.org\/10.3389\/fmicb.2015.00198","journal-title":"Front Microbiol"},{"key":"2260_CR37","doi-asserted-by":"publisher","first-page":"020072","DOI":"10.1063\/1.5027987","volume":"140","author":"ASI Fikri","year":"2018","unstructured":"Fikri ASI, Rahman IA, Nor NSM, Hamzah A (2018) Isolation and identification of local bacteria endophyte and screening of its antimicrobial property against pathogenic bacteria and fungi. AIP Conf Proc 140:020072. https:\/\/doi.org\/10.1063\/1.5027987","journal-title":"AIP Conf Proc"},{"issue":"3","key":"2260_CR38","doi-asserted-by":"publisher","first-page":"57","DOI":"10.1007\/s13205-022-03115-4","volume":"12","author":"A Dukare","year":"2022","unstructured":"Dukare A, Mhatre P, Maheshwari HS, Bagul S, Manjunatha BS, Khade Y, Kamble U (2022) Delineation of mechanistic approaches of rhizosphere microorganisms facilitated plant health and resilience under challenging conditions. 3. Biotech 12(3):57. https:\/\/doi.org\/10.1007\/s13205-022-03115-4","journal-title":"Biotech"},{"key":"2260_CR39","doi-asserted-by":"publisher","first-page":"36","DOI":"10.1016\/j.micres.2019.02.001","volume":"221","author":"I Afzal","year":"2019","unstructured":"Afzal I, Shinwari ZK, Sikandar S, Shahzad S (2019) Plant beneficial endophytic bacteria: mechanisms, diversity, host range and genetic determinants. Microbiol Res 221:36\u201349. https:\/\/doi.org\/10.1016\/j.micres.2019.02.001","journal-title":"Microbiol Res"},{"issue":"24","key":"2260_CR40","doi-asserted-by":"publisher","first-page":"9361","DOI":"10.3390\/ijms21249361","volume":"21","author":"M Pylak","year":"2020","unstructured":"Pylak M, Oszust K, Fr\u0105c M (2020) Searching for new beneficial bacterial isolates of wild raspberries for biocontrol of phytopathogens-antagonistic properties and functional characterization. Int J Mol Sci 21(24):9361. https:\/\/doi.org\/10.3390\/ijms21249361","journal-title":"Int J Mol Sci"},{"issue":"5","key":"2260_CR41","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1007\/s13205-020-02182-9","volume":"10","author":"T Chaudhary","year":"2020","unstructured":"Chaudhary T, Dixit M, Gera R, Shukla AK, Prakash A, Gupta G, Shukla P (2020) Techniques for improving formulations of bioinoculants. 3 Biotech 10(5):1\u20139. https:\/\/doi.org\/10.1007\/s13205-020-02182-9","journal-title":"3 Biotech"},{"issue":"6","key":"2260_CR42","doi-asserted-by":"publisher","first-page":"1072","DOI":"10.1111\/ppa.13037","volume":"68","author":"S Yariyama","year":"2019","unstructured":"Yariyama S, Ando S, Seo S, Nakaho K, Miyashita S, Kanayama Y, Takahashi H (2019) Exogenous application of l-histidine suppresses bacterial diseases and enhances ethylene production in rice seedlings. Plant Pathol 68(6):1072\u20131078. https:\/\/doi.org\/10.1111\/ppa.13037","journal-title":"Plant Pathol"},{"issue":"7","key":"2260_CR43","doi-asserted-by":"publisher","first-page":"1887","DOI":"10.3390\/molecules26071887","volume":"26","author":"M Han","year":"2021","unstructured":"Han M, Zhang C, Suglo P, Sun S, Wang M, Su T (2021) L-Aspartate: an essential metabolite for plant growth and stress acclimation. Molecules 26(7):1887. https:\/\/doi.org\/10.3390\/molecules26071887","journal-title":"Molecules"},{"key":"2260_CR44","doi-asserted-by":"publisher","first-page":"6581","DOI":"10.1128\/AEM.01240-09","volume":"75","author":"J Onofre-Lemus","year":"2009","unstructured":"Onofre-Lemus J, Hern\u00e1ndez-Lucas I, Girard L, Caballero-Mellado J (2009) ACC (1-aminocyclopropane-1-carboxylate) deaminase activity, a widespread trait in Burkholderia species, and its growth-promoting effect on tomato plants. Appl Environ Microbiol 75:6581\u20136590. https:\/\/doi.org\/10.1128\/AEM.01240-09","journal-title":"Appl Environ Microbiol"},{"key":"2260_CR45","doi-asserted-by":"publisher","first-page":"91","DOI":"10.1007\/s11104-004-6894-1","volume":"273","author":"J Kuklinsky-Sobral","year":"2005","unstructured":"Kuklinsky-Sobral J, Ara\u00fajo WL, Mendes R, Pizzirani-Kleiner AA, Azevedo JL (2005) Isolation and characterization of endophytic bacteria from soybean (Glycine max) grown in soil treated with glyphosate herbicide. Plant and Soil 273:91\u201399. https:\/\/doi.org\/10.1007\/s11104-004-6894-1","journal-title":"Plant and Soil"},{"key":"2260_CR46","doi-asserted-by":"publisher","first-page":"1945","DOI":"10.3389\/fmicb.2017.01945","volume":"8","author":"RP Singh","year":"2017","unstructured":"Singh RP, Jha PN (2017) The PGPR Stenotrophomonas maltophilia SBP-9 augments resistance against biotic and abiotic stress in wheat plants. Front Microbiol 8:1945. https:\/\/doi.org\/10.3389\/fmicb.2017.01945","journal-title":"Front Microbiol"},{"issue":"1","key":"2260_CR47","doi-asserted-by":"publisher","first-page":"547","DOI":"10.1007\/s11104-022-05304-9","volume":"473","author":"HM Tuong","year":"2022","unstructured":"Tuong HM, Garcia MS, Vandecasteele M, Willems A, Luo D, Beirinckx S, Goormachtig S (2022) Stenotrophomonas sp. SRS1 promotes growth of Arabidopsis and tomato plants under salt stress conditions. Plant and Soil 473(1):547\u2013571. https:\/\/doi.org\/10.1007\/s11104-022-05304-9","journal-title":"Plant and Soil"},{"key":"2260_CR48","doi-asserted-by":"publisher","first-page":"103859","DOI":"10.1016\/j.envexpbot.2019.103859","volume":"167","author":"AA Belimov","year":"2019","unstructured":"Belimov AA, Zinovkina NY, Safronova VI, Litvinsky VA, Nosikov VV, Zavalin AA, Tikhonovich IA (2019) Rhizobial ACC deaminase contributes to efficient symbiosis with pea (Pisum sativum L.) under single and combined cadmium and water deficit stress. Environ Exp Bot 167:103859","journal-title":"Environ Exp Bot"},{"key":"2260_CR49","doi-asserted-by":"publisher","first-page":"937","DOI":"10.3389\/fmicb.2015.00937","volume":"6","author":"RP Singh","year":"2015","unstructured":"Singh RP, Shelke GM, Kumar A, Jha PN (2015) Biochemistry and genetics of ACC deaminase: a weapon to \u201cstress ethylene\u201d produced in plants. Front Microbiol 6:937. https:\/\/doi.org\/10.3389\/fmicb.2015.00937","journal-title":"Front Microbiol"},{"issue":"5","key":"2260_CR50","doi-asserted-by":"publisher","first-page":"460","DOI":"10.1111\/lam.12479","volume":"61","author":"SP Prasannakumar","year":"2015","unstructured":"Prasannakumar SP, Gowtham HG, Hariprasad P, Shivaprasad K, Niranjana SR (2015) Delftia tsuruhatensis WGR\u2013UOM\u2013BT1, a novel rhizobacterium with PGPR properties from Rauwolfia serpentina (L.) Benth. ex Kurz also suppresses fungal phytopathogens by producing a new antibiotic\u2014AMTM. Lett Appl Microbiol 61(5):460\u2013468. https:\/\/doi.org\/10.1111\/lam.12479","journal-title":"Lett Appl Microbiol"},{"issue":"4","key":"2260_CR51","doi-asserted-by":"publisher","first-page":"34","DOI":"10.13140\/RG.2.2.10964.19844","volume":"37","author":"Y Blanco","year":"2016","unstructured":"Blanco Y (2016) Review: the role of weeds as a component of biodiversity in agro-ecosystems. Cultivos Trop 37(4):34\u201356. https:\/\/doi.org\/10.13140\/RG.2.2.10964.19844","journal-title":"Cultivos Trop"},{"issue":"1","key":"2260_CR52","doi-asserted-by":"publisher","first-page":"14","DOI":"10.1186\/s41938-021-00362-0","volume":"31","author":"T Luu","year":"2021","unstructured":"Luu T, Phi Q, Nguyen T, Dinh V, Pham B, Do T (2021) Antagonistic activity of endophytic bacteria isolated from weed plant against stem end rot pathogen of pitaya in Vietnam. Egypt J Biol Pest Control 31(1):14. https:\/\/doi.org\/10.1186\/s41938-021-00362-0","journal-title":"Egypt J Biol Pest Control"},{"key":"2260_CR53","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1186\/s41938-021-00451-0","volume":"31","author":"DQ Trung","year":"2021","unstructured":"Trung DQ, Anh LT, Thuy NT, Van DM, Hang TT (2021) Endophytic bacteria isolated from a weed plant as a potential biocontrol agent against stem end rot pathogen of pitaya in Vietnam. Egypt J Biol Pest Control 31:1\u20137. https:\/\/doi.org\/10.1186\/s41938-021-00451-0","journal-title":"Egypt J Biol Pest Control"},{"key":"2260_CR54","doi-asserted-by":"publisher","first-page":"1065","DOI":"10.1111\/j.1365-2672.2011.05142.x","volume":"111","author":"Q Wang","year":"2011","unstructured":"Wang Q, Xiong D, Zhao P, Yu X, Tu B, Wang G (2011) Effect of applying an arsenic-resistant and plant growth-promoting rhizobacterium to enhance soil arsenic phytoremediation by Populus deltoides LH05-17. J Appl Microbiol 111:1065\u20131074. https:\/\/doi.org\/10.1111\/j.1365-2672.2011.05142.x","journal-title":"J Appl Microbiol"},{"issue":"7","key":"2260_CR55","doi-asserted-by":"publisher","first-page":"514","DOI":"10.1038\/nrmicro2163","volume":"7","author":"RP Ryan","year":"2009","unstructured":"Ryan RP, Monchy S, Cardinale M, Taghavi S, Crossman L, Avison MB, Dow JM (2009) The versatility and adaptation of bacteria from the genus Stenotrophomonas. Nat Rev Microbiol 7(7):514\u2013525. https:\/\/doi.org\/10.1038\/nrmicro2163","journal-title":"Nat Rev Microbiol"},{"issue":"9","key":"2260_CR56","doi-asserted-by":"publisher","first-page":"1271","DOI":"10.1080\/03650340.2016.1139087","volume":"62","author":"H Etesami","year":"2016","unstructured":"Etesami H, Alikhani HA (2016) Suppression of the fungal pathogen Magnaporthe grisea by Stenotrophomonas maltophilia, a seed-borne rice (Oryza sativa L.) endophytic bacterium. Arch Agron. Soil Sci 62(9):1271\u20131284. https:\/\/doi.org\/10.1080\/03650340.2016.1139087","journal-title":"Soil Sci"},{"key":"2260_CR57","doi-asserted-by":"publisher","first-page":"353","DOI":"10.1590\/S1516-89132006000400001","volume":"49","author":"AJI Carrim","year":"2006","unstructured":"Carrim AJI, Barbosa E, Vieira JDG (2006) Enzymatic activity of endophytic bacterial isolates of Jacaranda decurrens Cham (Carobinhado-campo). Braz Arch Biol Technol 49:353\u2013359. https:\/\/doi.org\/10.1590\/S1516-89132006000400001","journal-title":"Braz Arch Biol Technol"},{"issue":"9","key":"2260_CR58","doi-asserted-by":"publisher","first-page":"1759","DOI":"10.3390\/microorganisms10091759","volume":"10","author":"A Bonaterra","year":"2022","unstructured":"Bonaterra A, Badosa E, Daranas N, Franc\u00e9s J, Rosell\u00f3 G, Montesinos E (2022) Bacteria as biological control agents of plant diseases. Microorganisms 10(9):1759. https:\/\/doi.org\/10.3390\/microorganisms10091759","journal-title":"Microorganisms"},{"key":"2260_CR59","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1186\/s13068-015-0364-2","volume":"8","author":"AF Miranda","year":"2015","unstructured":"Miranda AF, Taha M, Wrede D, Morrison P, Ball AS, Stevenson T, Mouradov A (2015) Lipid production in association of filamentous fungi with genetically modified cyanobacterial cells. Biotechnol Biofuels 8:1\u201318. https:\/\/doi.org\/10.1186\/s13068-015-0364-2","journal-title":"Biotechnol Biofuels"},{"key":"2260_CR60","doi-asserted-by":"publisher","first-page":"696972","DOI":"10.3389\/ffunb.2021.696972","volume":"2","author":"A Tayyrov","year":"2021","unstructured":"Tayyrov A, Wei C, Fetz C, Goryachkin A, Sch\u00e4chle P, Nystr\u00f6m L, K\u00fcnzler M (2021) Cytoplasmic lipases\u2014a novel class of fungal defense proteins against nematodes. Front Fungal Biol 2:696972. https:\/\/doi.org\/10.3389\/ffunb.2021.696972","journal-title":"Front Fungal Biol"},{"key":"2260_CR61","doi-asserted-by":"publisher","first-page":"1","DOI":"10.3923\/jm.2011.1.24","volume":"6","author":"R Sangeetha","year":"2011","unstructured":"Sangeetha R, Arulpandi I, Geetha A (2011) Bacterial lipases as potential industrial biocatalysts: an overview. Res J Microbiol 6:1","journal-title":"Res J Microbiol"},{"issue":"6","key":"2260_CR62","doi-asserted-by":"publisher","first-page":"855","DOI":"10.1007\/s10532-013-9633-6","volume":"24","author":"ZH Liu","year":"2013","unstructured":"Liu ZH, Cao YM, Zhou QW, Guo K, Ge F, Hou JY, Hu SY, Yuan S, Dai YJ (2013) Acrylamide biodegradation ability and plant growth-promoting properties of Variovorax boronicumulans CGMCC 4969. Biodegradation 24(6):855\u2013864. https:\/\/doi.org\/10.1007\/s10532-013-9633-6","journal-title":"Biodegradation"},{"key":"2260_CR63","doi-asserted-by":"publisher","first-page":"142","DOI":"10.1016\/j.tibtech.2009.12.002","volume":"28","author":"M Rajkumar","year":"2010","unstructured":"Rajkumar M, Ae N, Prasad MNV, Freitas H (2010) Potential of siderophore-producing bacteria for improving heavy metal phytoextraction. Trends Biotechnol 28:142\u2013149. https:\/\/doi.org\/10.1016\/j.tibtech.2009.12.002","journal-title":"Trends Biotechnol"},{"key":"2260_CR64","doi-asserted-by":"publisher","first-page":"2844","DOI":"10.1111\/j.1462-2920.2011.02556.x","volume":"13","author":"IJ Schalk","year":"2011","unstructured":"Schalk IJ, Hannauer M, Braud A (2011) Minireview new roles for bacterial siderophores in metal transport and tolerance. Environ Microbiol 13:2844\u20132854. https:\/\/doi.org\/10.1111\/j.1462-2920.2011.02556.x","journal-title":"Environ Microbiol"},{"key":"2260_CR65","doi-asserted-by":"publisher","first-page":"74","DOI":"10.1016\/j.pmpp.2012.11.004","volume":"81","author":"F Nikraftar","year":"2013","unstructured":"Nikraftar F, Taheri P, Rastegar MF, Tarighi S (2013) Tomato partial resistance to Rhizoctonia solani involves antioxidative defense mechanisms. Physiol Mol Plant Pathol 81:74\u201383. https:\/\/doi.org\/10.1016\/j.pmpp.2012.11.004","journal-title":"Physiol Mol Plant Pathol"},{"key":"2260_CR66","doi-asserted-by":"publisher","first-page":"17","DOI":"10.1016\/j.scienta.2017.05.0235","volume":"224","author":"M Szczech","year":"2017","unstructured":"Szczech M, Nawrocka J, Felczy\u0144ski K, Ma\u0142olepsza U, Sobolewski J, Kowalska B, Maciorowski R, Jas K, Kancelista A (2017) Trichoderma atroviride TRS25 isolate reduces downy mildew and induces systemic defence responses in cucumber in field conditions. Sci Hortic 224:17\u201326. https:\/\/doi.org\/10.1016\/j.scienta.2017.05.0235","journal-title":"Sci Hortic"},{"key":"2260_CR67","doi-asserted-by":"publisher","first-page":"460","DOI":"10.3390\/futurepharmacol2040030","volume":"2","author":"K Ecevit","year":"2022","unstructured":"Ecevit K, Barros AA, Silva JM, Reis RL (2022) Preventing microbial infections with natural phenolic compounds. Future Pharmacol 2:460\u2013498. https:\/\/doi.org\/10.3390\/futurepharmacol2040030","journal-title":"Future Pharmacol"},{"key":"2260_CR68","doi-asserted-by":"publisher","first-page":"5270","DOI":"10.13057\/biodiv\/d211130","volume":"21","author":"V Maulidia","year":"2020","unstructured":"Maulidia V, Soesanto L, Khairan KS, Hamaguchi T, Hasegawa K, Sriwati R (2020) Secondary metabolites produced by endophytic bacteria against the root-knot nematode (Meloidogyne sp.). Biodiversitas 21:5270\u20135275. https:\/\/doi.org\/10.13057\/biodiv\/d211130","journal-title":"Biodiversitas"},{"key":"2260_CR69","doi-asserted-by":"publisher","first-page":"102088","DOI":"10.1016\/j.bcab.2021.102088","volume":"35","author":"M Singh","year":"2021","unstructured":"Singh M, Pandey DK (2021) Endophytic bacterial strains modulated synthesis of lycopene and bioactive compounds in Solanum lycopersicum L. fruit. Biocatal Agric Biotechnol 35:102088. https:\/\/doi.org\/10.1016\/j.bcab.2021.102088","journal-title":"Biocatal Agric Biotechnol"},{"issue":"8","key":"2260_CR70","doi-asserted-by":"publisher","first-page":"e0269962","DOI":"10.1371\/journal.pone.0269962","volume":"17","author":"Y Akter","year":"2022","unstructured":"Akter Y, Barua R, Nasir Uddin M, Muhammad Sanaullah AF, Marzan LW (2022) Bioactive potentiality of secondary metabolites from endophytic bacteria against SARS-COV-2: an in-silico approach. PloS One 17(8):e0269962. https:\/\/doi.org\/10.1371\/journal.pone.0269962","journal-title":"PloS One"},{"key":"2260_CR71","doi-asserted-by":"publisher","first-page":"1617","DOI":"10.3389\/fpls.2017.01617","volume":"8","author":"R Jacoby","year":"2017","unstructured":"Jacoby R, Peukert M, Succurro A, Koprivova A, Kopriva S (2017) The role of soil microorganisms in plant mineral nutrition \u2013 current knowledge and future directions. Front Plant Sci 8:1617. https:\/\/doi.org\/10.3389\/fpls.2017.01617","journal-title":"Front Plant Sci"},{"key":"2260_CR72","doi-asserted-by":"publisher","first-page":"100161","DOI":"10.1016\/j.cpb.2020.100161","volume":"23","author":"KM Dastogeer","year":"2020","unstructured":"Dastogeer KM, Tumpa FH, Sultana A, Akter MA, Chakraborty A (2020) Plant microbiome\u2013an account of the factors that shape community composition and diversity. Curr Plant Biol 23:100161. https:\/\/doi.org\/10.1016\/j.cpb.2020.100161","journal-title":"Curr Plant Biol"},{"key":"2260_CR73","doi-asserted-by":"publisher","first-page":"1407","DOI":"10.1111\/1462-2920.13618","volume":"19","author":"A Samad","year":"2017","unstructured":"Samad A, Trognitz F, Compant S, Antonielli L, Sessitsch A (2017) Shared and host-specific microbiome diversity and functioning of grapevine and accompanying weed plants. Environ Microbiol 19:1407\u20131424. https:\/\/doi.org\/10.1111\/1462-2920.13618","journal-title":"Environ Microbiol"}],"container-title":["Microbial Ecology"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/link.springer.com\/content\/pdf\/10.1007\/s00248-023-02260-4.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/link.springer.com\/article\/10.1007\/s00248-023-02260-4\/fulltext.html","content-type":"text\/html","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/link.springer.com\/content\/pdf\/10.1007\/s00248-023-02260-4.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2023,11,11]],"date-time":"2023-11-11T07:07:00Z","timestamp":1699686420000},"score":1,"resource":{"primary":{"URL":"https:\/\/link.springer.com\/10.1007\/s00248-023-02260-4"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2023,7,1]]},"references-count":73,"journal-issue":{"issue":"4","published-print":{"date-parts":[[2023,11]]}},"alternative-id":["2260"],"URL":"https:\/\/doi.org\/10.1007\/s00248-023-02260-4","relation":{},"ISSN":["0095-3628","1432-184X"],"issn-type":[{"value":"0095-3628","type":"print"},{"value":"1432-184X","type":"electronic"}],"subject":[],"published":{"date-parts":[[2023,7,1]]},"assertion":[{"value":"28 April 2023","order":1,"name":"received","label":"Received","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"21 June 2023","order":2,"name":"accepted","label":"Accepted","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"1 July 2023","order":3,"name":"first_online","label":"First Online","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"8 July 2023","order":4,"name":"change_date","label":"Change Date","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"Update","order":5,"name":"change_type","label":"Change Type","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"The original version of this paper was updated due to italicized scientific names in the Abstract section.","order":6,"name":"change_details","label":"Change Details","group":{"name":"ArticleHistory","label":"Article History"}},{"order":1,"name":"Ethics","group":{"name":"EthicsHeading","label":"Declarations"}},{"value":"This article does not contain any studies with human participants or animals performed by any of the authors.","order":2,"name":"Ethics","group":{"name":"EthicsHeading","label":"Ethical Approval"}},{"value":"The authors declare no competing interests.","order":3,"name":"Ethics","group":{"name":"EthicsHeading","label":"Competing Interests"}}]}}