{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,10,29]],"date-time":"2026-10-29T08:21:20Z","timestamp":1793262080296,"version":"4.5.0"},"reference-count":66,"publisher":"Springer Science and Business Media LLC","issue":"9-10","license":[{"start":{"date-parts":[[2022,4,30]],"date-time":"2022-04-30T00:00:00Z","timestamp":1651276800000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.springer.com\/tdm"},{"start":{"date-parts":[[2022,4,30]],"date-time":"2022-04-30T00:00:00Z","timestamp":1651276800000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/www.springer.com\/tdm"}],"funder":[{"DOI":"10.13039\/501100003725","name":"National Research Foundation of Korea","doi-asserted-by":"crossref","award":["NRF-2022R1A2C1008958"],"award-info":[{"award-number":["NRF-2022R1A2C1008958"]}],"id":[{"id":"10.13039\/501100003725","id-type":"DOI","asserted-by":"crossref"}]},{"DOI":"10.13039\/100011512","name":"National Research Foundation","doi-asserted-by":"publisher","award":["NRF-2019R1A2C2084282"],"award-info":[{"award-number":["NRF-2019R1A2C2084282"]}],"id":[{"id":"10.13039\/100011512","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":["link.springer.com"],"crossmark-restriction":false},"short-container-title":["Appl Microbiol Biotechnol"],"published-print":{"date-parts":[[2022,5]]},"DOI":"10.1007\/s00253-022-11935-w","type":"journal-article","created":{"date-parts":[[2022,4,30]],"date-time":"2022-04-30T06:02:22Z","timestamp":1651298542000},"page":"3721-3734","update-policy":"https:\/\/doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":8,"title":["Effect of luxS encoding a synthase of quorum-sensing signal molecule AI-2 of Vibrio vulnificus on mouse gut microbiome"],"prefix":"10.1007","volume":"106","author":[{"given":"Keun-Woo","family":"Lee","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Haneul","family":"Jie","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Soyee","family":"Kim","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Min-Gyung","family":"Baek","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Hana","family":"Yi","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-5433-4175","authenticated-orcid":false,"given":"Kun-Soo","family":"Kim","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"297","published-online":{"date-parts":[[2022,4,30]]},"reference":[{"issue":"3","key":"11935_CR1","doi-asserted-by":"publisher","first-page":"e02331","DOI":"10.1128\/mBio.02331-17","volume":"9","author":"RG Abisado","year":"2018","unstructured":"Abisado RG, Benomar S, Klaus JR, Dandekar AA, Chandler JR (2018) Bacterial quorum sensing and microbial community interactions. mBbio 9(3):e02331-07. https:\/\/doi.org\/10.1128\/mBio.02331-17","journal-title":"mBbio"},{"issue":"12","key":"11935_CR2","doi-asserted-by":"publisher","first-page":"4043","DOI":"10.1128\/jb.179.12.4043-4045.1997","volume":"179","author":"BL Bassler","year":"1997","unstructured":"Bassler BL, Greenberg EP, Stevens AM (1997) Cross-species induction of luminescence in the quorum-sensing bacterium Vibrio harveyi. J Bacteriol 179(12):4043\u20134045. https:\/\/doi.org\/10.1128\/jb.179.12.4043-4045.1997","journal-title":"J Bacteriol"},{"issue":"4","key":"11935_CR3","doi-asserted-by":"publisher","first-page":"773","DOI":"10.1111\/j.1365-2958.1993.tb01737.x","volume":"9","author":"BL Bassler","year":"1993","unstructured":"Bassler BL, Wright M, Showalter RE, Silverman MR (1993) Intercellular signalling in Vibrio harveyi: sequence and function of genes regulating expression of luminescence. Mol Microbiol 9(4):773\u2013786. https:\/\/doi.org\/10.1111\/j.1365-2958.1993.tb01737.x","journal-title":"Mol Microbiol"},{"issue":"3","key":"11935_CR4","doi-asserted-by":"publisher","first-page":"403","DOI":"10.1111\/j.1365-2958.1994.tb01029.x","volume":"12","author":"BL Bassler","year":"1994","unstructured":"Bassler BL, Wright M, Silverman MR (1994) Sequence and function of LuxO, a negative regulator of luminescence in Vibrio harveyi. Mol Microbiol 12(3):403\u2013412. https:\/\/doi.org\/10.1111\/j.1365-2958.1994.tb01029.x","journal-title":"Mol Microbiol"},{"issue":"10","key":"11935_CR5","doi-asserted-by":"publisher","first-page":"2328","DOI":"10.1128\/jcm.27.10.2328-2330.1989","volume":"27","author":"SJ Bhatia","year":"1989","unstructured":"Bhatia SJ, Kochar N, Abraham P, Nair NG, Mehta AP (1989) Lactobacillus acidophilus inhibits growth of Campylobacter pylori in vitro. J Clin Microbiol 27(10):2328\u20132330. https:\/\/doi.org\/10.1128\/jcm.27.10.2328-2330.1989","journal-title":"J Clin Microbiol"},{"issue":"15","key":"11935_CR6","doi-asserted-by":"publisher","first-page":"2114","DOI":"10.1093\/bioinformatics\/btu170","volume":"30","author":"AM Bolger","year":"2014","unstructured":"Bolger AM, Lohse M, Usadel B (2014) Trimmomatic: a flexible trimmer for Illumina sequence data. Bioinformatics 30(15):2114\u20132120. https:\/\/doi.org\/10.1093\/bioinformatics\/btu170","journal-title":"Bioinformatics"},{"issue":"6","key":"11935_CR7","doi-asserted-by":"publisher","first-page":"1039","DOI":"10.1128\/jcm.17.6.1039-1044.1983","volume":"17","author":"PR Brayton","year":"1983","unstructured":"Brayton PR, West PA, Russek E, Colwell RR (1983) New selective plating medium for isolation of Vibrio vulnificus biogroup 1. J Clin Microbiol 17(6):1039\u20131044. https:\/\/doi.org\/10.1128\/jcm.17.6.1039-1044.1983","journal-title":"J Clin Microbiol"},{"issue":"5","key":"11935_CR8","doi-asserted-by":"publisher","first-page":"927","DOI":"10.2307\/1936861","volume":"60","author":"KP Burnham","year":"1979","unstructured":"Burnham KP, Overton WS (1979) Robust estimation of population size when capture probabilities vary among animals. Ecology 60(5):927\u2013936. https:\/\/doi.org\/10.2307\/1936861","journal-title":"Ecology"},{"issue":"417","key":"11935_CR9","doi-asserted-by":"publisher","first-page":"210","DOI":"10.2307\/2290471","volume":"87","author":"A Chao","year":"1992","unstructured":"Chao A, Lee S-M (1992) Estimating the number of classes via sample coverage. J Am Stat Assoc 87(417):210\u2013217. https:\/\/doi.org\/10.2307\/2290471","journal-title":"J Am Stat Assoc"},{"issue":"4","key":"11935_CR10","doi-asserted-by":"publisher","first-page":"429","DOI":"10.1023\/A:1026096204727","volume":"10","author":"A Chao","year":"2003","unstructured":"Chao A, Shen T-J (2003) Nonparametric estimation of Shannon\u2019s index of diversity when there are unseen species in sample. Environ Ecol Stat 10(4):429\u2013443. https:\/\/doi.org\/10.1023\/A:1026096204727","journal-title":"Environ Ecol Stat"},{"issue":"6871","key":"11935_CR11","doi-asserted-by":"publisher","first-page":"545","DOI":"10.1038\/415545a","volume":"415","author":"X Chen","year":"2002","unstructured":"Chen X, Schauder S, Potier N, Van Dorsselaer A, Pelczer I, Bassler BL, Hughson FM (2002) Structural identification of a bacterial quorum-sensing signal containing boron. Nature 415(6871):545\u2013549. https:\/\/doi.org\/10.1038\/415545a","journal-title":"Nature"},{"key":"11935_CR12","doi-asserted-by":"publisher","first-page":"1827","DOI":"10.3389\/fimmu.2020.01827","volume":"11","author":"G Coquant","year":"2020","unstructured":"Coquant G, Grill J-P, Seksik P (2020) Impact of N-acyl-homoserine lactones, quorum sensing molecules, on gut immunity. Front Immunol 11:1827. https:\/\/doi.org\/10.3389\/fimmu.2020.01827","journal-title":"Front Immunol"},{"key":"11935_CR13","doi-asserted-by":"publisher","first-page":"91","DOI":"10.1007\/978-1-4615-2668-1_3","volume-title":"Bacteriocins of lactic acid bacteria","author":"L De Vuyst","year":"1994","unstructured":"De Vuyst L, Vandamme EJ (1994) Antimicrobial potential of lactic acid bacteria. In: De Vuyst L, Vandamme EJ (eds) Bacteriocins of lactic acid bacteria. Springer Nature, Cham, pp 91\u2013142"},{"issue":"10","key":"11935_CR14","doi-asserted-by":"publisher","first-page":"e1002195","DOI":"10.1371\/journal.pcbi.1002195","volume":"7","author":"SR Eddy","year":"2011","unstructured":"Eddy SR (2011) Accelerated Profile HMM Searches. PLoS Comput Biol 7(10):e1002195. https:\/\/doi.org\/10.1371\/journal.pcbi.1002195","journal-title":"PLoS Comput Biol"},{"issue":"19","key":"11935_CR15","doi-asserted-by":"publisher","first-page":"2460","DOI":"10.1093\/bioinformatics\/btq461","volume":"26","author":"RC Edgar","year":"2010","unstructured":"Edgar RC (2010) Search and clustering orders of magnitude faster than BLAST. Bioinformatics 26(19):2460\u20132461. https:\/\/doi.org\/10.1093\/bioinformatics\/btq461","journal-title":"Bioinformatics"},{"issue":"16","key":"11935_CR16","doi-asserted-by":"publisher","first-page":"2194","DOI":"10.1093\/bioinformatics\/btr381","volume":"27","author":"RC Edgar","year":"2011","unstructured":"Edgar RC, Haas BJ, Clemente JC, Quince C, Knight R (2011) UCHIME improves sensitivity and speed of chimera detection. Bioinformatics 27(16):2194\u20132200. https:\/\/doi.org\/10.1093\/bioinformatics\/btr381","journal-title":"Bioinformatics"},{"issue":"5","key":"11935_CR17","doi-asserted-by":"publisher","first-page":"e0156289","DOI":"10.1371\/journal.pone.0156289","volume":"11","author":"N Eissa","year":"2016","unstructured":"Eissa N, Hussein H, Wang H, Rabbi MF, Bernstein CN, Ghia JE (2016) Stability of reference genes for messenger RNA quantification by real-time PCR in mouse dextran sodium sulfate experimental colitis. PLoS ONE 11(5):e0156289. https:\/\/doi.org\/10.1371\/journal.pone.0156289","journal-title":"PLoS ONE"},{"issue":"1","key":"11935_CR18","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1016\/0006-3207(92)91201-3","volume":"61","author":"DP Faith","year":"1992","unstructured":"Faith DP (1992) Conservation evaluation and phylogenetic diversity. Biol Conserv 61(1):1\u201310. https:\/\/doi.org\/10.1016\/0006-3207(92)91201-3","journal-title":"Biol Conserv"},{"issue":"2","key":"11935_CR19","doi-asserted-by":"publisher","first-page":"665","DOI":"10.1046\/j.1365-2958.1999.01208.x","volume":"31","author":"JA Freeman","year":"1999","unstructured":"Freeman JA, Bassler BL (1999) A genetic analysis of the function of LuxO, a two-component response regulator involved in quorum sensing in Vibrio harveyi. Mol Microbiol 31(2):665\u2013677. https:\/\/doi.org\/10.1046\/j.1365-2958.1999.01208.x","journal-title":"Mol Microbiol"},{"issue":"1","key":"11935_CR20","doi-asserted-by":"publisher","first-page":"139","DOI":"10.1046\/j.1365-2958.2000.01684.x","volume":"35","author":"JA Freeman","year":"2000","unstructured":"Freeman JA, Lilley BN, Bassler BL (2000) A genetic analysis of the functions of LuxN: a two-component hybrid sensor kinase that regulates quorum sensing in Vibrio harveyi. Mol Microbiol 35(1):139\u2013149. https:\/\/doi.org\/10.1046\/j.1365-2958.2000.01684.x","journal-title":"Mol Microbiol"},{"issue":"2","key":"11935_CR21","doi-asserted-by":"publisher","first-page":"269","DOI":"10.1128\/jb.176.2.269-275.1994","volume":"176","author":"WC Fuqua","year":"1994","unstructured":"Fuqua WC, Winans SC, Greenberg EP (1994) Quorum sensing in bacteria: the LuxR-LuxI family of cell density-responsive transcriptional regulators. J Bacteriol 176(2):269\u2013275. https:\/\/doi.org\/10.1128\/jb.176.2.269-275.1994","journal-title":"J Bacteriol"},{"issue":"12","key":"11935_CR22","doi-asserted-by":"publisher","first-page":"820","DOI":"10.4315\/0362-028X-40.12.820","volume":"40","author":"SE Gilliland","year":"1977","unstructured":"Gilliland SE, Speck ML (1977) Antagonistic action of Lactobacillus acidophilus toward intestinal and foodborne pathogens in associative cultures. J Food Prot 40(12):820\u2013823. https:\/\/doi.org\/10.4315\/0362-028X-40.12.820","journal-title":"J Food Prot"},{"issue":"10","key":"11935_CR23","doi-asserted-by":"publisher","first-page":"5586","DOI":"10.1128\/IAI.00171-06","volume":"74","author":"SY Goo","year":"2006","unstructured":"Goo SY, Lee HJ, Kim WH, Han KL, Park DK, Lee HJ, Kim SM, Kim KS, Lee KH, Park SJ (2006) Identification of OmpU of Vibrio vulnificus as a fibronectin-binding protein and its role in bacterial pathogenesis. Infect Immun 74(10):5586\u20135594. https:\/\/doi.org\/10.1128\/IAI.00171-06","journal-title":"Infect Immun"},{"issue":"6","key":"11935_CR24","doi-asserted-by":"publisher","first-page":"1459","DOI":"10.2307\/1934716","volume":"56","author":"KL Heck Jr","year":"1975","unstructured":"Heck KL Jr, van Belle G, Simberloff D (1975) Explicit calculation of the rarefaction diversity measurement and the determination of sufficient sample size. Ecology 56(6):1459\u20131461. https:\/\/doi.org\/10.2307\/1934716","journal-title":"Ecology"},{"issue":"2","key":"11935_CR25","doi-asserted-by":"publisher","first-page":"171","DOI":"10.1128\/mr.59.2.171-200.1995","volume":"59","author":"RW Jack","year":"1995","unstructured":"Jack RW, Tagg JR, Ray B (1995) Bacteriocins of gram-positive bacteria. Microbiol Rev 59(2):171\u2013200. https:\/\/doi.org\/10.1128\/mr.59.2.171-200.1995","journal-title":"Microbiol Rev"},{"issue":"46","key":"11935_CR26","doi-asserted-by":"publisher","first-page":"45072","DOI":"10.1074\/jbc.M308184200","volume":"278","author":"HS Jeong","year":"2003","unstructured":"Jeong HS, Lee MH, Lee KH, Park SJ, Choi SH (2003) SmcR and cyclic AMP receptor protein coactivate Vibrio vulnificus vvpE encoding elastase through the RpoS-dependent promoter in a synergistic manner. J Biol Chem 278(46):45072\u201345081. https:\/\/doi.org\/10.1074\/jbc.M308184200","journal-title":"J Biol Chem"},{"issue":"3","key":"11935_CR27","doi-asserted-by":"publisher","first-page":"e1002581","DOI":"10.1371\/journal.ppat.1002581","volume":"8","author":"HG Jeong","year":"2012","unstructured":"Jeong HG, Satchell JF (2012) Additive function of Vibrio vulnificus MARTXVv and VvhA cytolysins promotes rapid growth and epithelial tissue necrosis during intestinal injection. PLoS Pathogen 8(3):e1002581. https:\/\/doi.org\/10.1371\/journal.ppat.1002581","journal-title":"PLoS Pathogen"},{"issue":"1","key":"11935_CR28","doi-asserted-by":"publisher","first-page":"161","DOI":"10.1186\/s40168-021-01095-w","volume":"9","author":"JA Kim","year":"2021","unstructured":"Kim JA, Jang BR, Kim YR, Jung YC, Kim KS, Lee KH (2021) Vibrio vulnificus induces the death of a major bacterial species in the mouse gut via cyclo-Phe-Pro. Microbiome 9(1):161. https:\/\/doi.org\/10.1186\/s40168-021-01095-w","journal-title":"Microbiome"},{"issue":"10","key":"11935_CR29","doi-asserted-by":"publisher","first-page":"3721","DOI":"10.1128\/IAI.00561-13","volume":"81","author":"SM Kim","year":"2013","unstructured":"Kim SM, Park JH, Lee HS, Kim WB, Ryu JM, Han HJ, Choi SH (2013) LuxR homologue SmcR is essential for Vibrio vulnificus pathogenesis and biofilm detachment, and its expression is induced by host cells. Infect Immun 81(10):3721\u20133730. https:\/\/doi.org\/10.1128\/IAI.00561-13","journal-title":"Infect Immun"},{"issue":"6","key":"11935_CR30","doi-asserted-by":"publisher","first-page":"1647","DOI":"10.1046\/j.1365-2958.2003.03536.x","volume":"48","author":"SY Kim","year":"2003","unstructured":"Kim SY, Lee SE, Kim YR, Kim CM, Ryu PY, Choy HE, Chung SS, Rhee JH (2003) Regulation of Vibrio vulnificus virulence by the LuxS quorum-sensing system. Mol Microbiol 48(6):1647\u20131664. https:\/\/doi.org\/10.1046\/j.1365-2958.2003.03536.x","journal-title":"Mol Microbiol"},{"issue":"3","key":"11935_CR31","doi-asserted-by":"publisher","first-page":"337","DOI":"10.1016\/0300-9084(88)90206-4","volume":"70","author":"TR Klaenhammer","year":"1988","unstructured":"Klaenhammer TR (1988) Bacteriocins of lactic acid bacteria. Biochimie 70(3):337\u2013349. https:\/\/doi.org\/10.1016\/0300-9084(88)90206-4","journal-title":"Biochimie"},{"issue":"3","key":"11935_CR32","doi-asserted-by":"publisher","first-page":"271","DOI":"10.1016\/s0944-5013(98)80011-6","volume":"153","author":"T Koga","year":"1998","unstructured":"Koga T, Mizobe T, Takumi K (1998) Antibacterial activity of Lactobacillus species against Vibrio species. Microbiol Res 153(3):271\u2013275. https:\/\/doi.org\/10.1016\/s0944-5013(98)80011-6","journal-title":"Microbiol Res"},{"issue":"1","key":"11935_CR33","doi-asserted-by":"publisher","first-page":"61","DOI":"10.1016\/s0736-4679(97)00230-8","volume":"16","author":"KS Kumamoto","year":"1998","unstructured":"Kumamoto KS, Vukich DJ (1998) Clinical infections of Vibrio vulnificus: a case report and review of the literature. J Emerg Med 16(1):61\u201366. https:\/\/doi.org\/10.1016\/s0736-4679(97)00230-8","journal-title":"J Emerg Med"},{"issue":"7","key":"11935_CR34","doi-asserted-by":"publisher","first-page":"e0181463","DOI":"10.1371\/journal.pone.0181463","volume":"12","author":"B Lee","year":"2017","unstructured":"Lee B, Moon T, Yoon S, Weissman T (2017) DUDE-Seq: fast, flexible, and robust denoising for targeted amplicon sequencing. PLoS ONE 12(7):e0181463. https:\/\/doi.org\/10.1371\/journal.pone.0181463","journal-title":"PLoS ONE"},{"key":"11935_CR35","unstructured":"Lee JH, Rhee JE, Park U, Ju HM, Lee BC, Kim TS, Jeong HS, Choi SH (2007) Identification and functional analysis of Vibrio vulnificus SmcR, a novel global regulator. J Microbiol Biotechnol 17(2):325\u2013334.\u00a0https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/18051765. Accessed\u00a0Mar 30, 2022"},{"issue":"1","key":"11935_CR36","doi-asserted-by":"publisher","first-page":"831","DOI":"10.1038\/s41598-021-04757-9","volume":"12","author":"KW Lee","year":"2022","unstructured":"Lee KW, Wen Y, Park NY, Kim KS (2022) Quorum sensing and iron-dependent coordinated control of autoinducer-2 production via small RNA RyhB in Vibrio vulnificus. Sci Rep 12(1):831. https:\/\/doi.org\/10.1038\/s41598-021-04757-9","journal-title":"Sci Rep"},{"issue":"11","key":"11935_CR37","doi-asserted-by":"publisher","first-page":"4145","DOI":"10.1172\/JCI64240","volume":"122","author":"RJ Lee","year":"2012","unstructured":"Lee RJ, Xiong G, Kofonow JM, Chen B, Lysenko A, Jiang P, Abraham V, Doghramji L, Adappa ND, Palmer JN, Kennedy DW, Beauchamp GK, Doulias PT, Ischiropoulos H, Kreindler JL, Reed DR, Cohen NA (2012) T2R38 taste receptor polymorphisms underlie susceptibility to upper respiratory infection. J Clin Invest 122(11):4145\u20134159. https:\/\/doi.org\/10.1172\/JCI64240","journal-title":"J Clin Invest"},{"issue":"1","key":"11935_CR38","doi-asserted-by":"publisher","first-page":"10","DOI":"10.1016\/j.ijmm.2015.10.006","volume":"306","author":"SJ Lee","year":"2016","unstructured":"Lee SJ, Jung YH, Ryu JM, Jang KK, Choi SH, Han HJ (2016) VvpE mediates the intestinal colonization of Vibrio vulnificus by the disruption of tight junctions. Int J Med Microbiol 306(1):10\u201319. https:\/\/doi.org\/10.1016\/j.ijmm.2015.10.006","journal-title":"Int J Med Microbiol"},{"issue":"2","key":"11935_CR39","doi-asserted-by":"publisher","first-page":"207","DOI":"10.1111\/j.1574-6968.1999.tb13570.x","volume":"174","author":"DA Linkous","year":"1999","unstructured":"Linkous DA, Oliver JD (1999) Pathogenesis of Vibrio vulnificus. FEMS Microbiol Lett 174(2):207\u2013214. https:\/\/doi.org\/10.1111\/j.1574-6968.1999.tb13570.x","journal-title":"FEMS Microbiol Lett"},{"key":"11935_CR40","doi-asserted-by":"publisher","first-page":"31","DOI":"10.1186\/1471-2105-13-31","volume":"13","author":"AP Masella","year":"2012","unstructured":"Masella AP, Bartram AK, Truszkowski JM, Brown DG, Neufeld JD (2012) PANDAseq: paired-end assembler for illumina sequences. BMC Bioinformatics 13:31. https:\/\/doi.org\/10.1186\/1471-2105-13-31","journal-title":"BMC Bioinformatics"},{"key":"11935_CR41","doi-asserted-by":"publisher","first-page":"165","DOI":"10.1146\/annurev.micro.55.1.165","volume":"55","author":"MB Miller","year":"2001","unstructured":"Miller MB, Bassler BL (2001) Quorum sensing in bacteria. Annu Rev Microbiol 55:165\u2013199. https:\/\/doi.org\/10.1146\/annurev.micro.55.1.165","journal-title":"Annu Rev Microbiol"},{"issue":"3","key":"11935_CR42","doi-asserted-by":"publisher","first-page":"303","DOI":"10.1016\/s0092-8674(02)00829-2","volume":"110","author":"MB Miller","year":"2002","unstructured":"Miller MB, Skorupski K, Lenz DH, Taylor RK, Bassler BL (2002) Parallel quorum sensing systems converge to regulate virulence in Vibrio cholerae. Cell 110(3):303\u2013314. https:\/\/doi.org\/10.1016\/s0092-8674(02)00829-2","journal-title":"Cell"},{"issue":"1","key":"11935_CR43","doi-asserted-by":"publisher","first-page":"11","DOI":"10.1093\/bioinformatics\/4.1.11","volume":"4","author":"EW Myers","year":"1988","unstructured":"Myers EW, Miller W (1988) Optimal alignments in linear space. Comput Appl Biosci 4(1):11\u201317. https:\/\/doi.org\/10.1093\/bioinformatics\/4.1.11","journal-title":"Comput Appl Biosci"},{"issue":"1","key":"11935_CR44","doi-asserted-by":"publisher","first-page":"313","DOI":"10.1128\/jb.104.1.313-322.1970","volume":"104","author":"KH Nealson","year":"1970","unstructured":"Nealson KH, Platt T, Hastings JW (1970) Cellular control of the synthesis and activity of the bacterial luminescent system. J Bacteriol 104(1):313\u2013322. https:\/\/doi.org\/10.1128\/jb.104.1.313-322.1970","journal-title":"J Bacteriol"},{"key":"11935_CR45","doi-asserted-by":"publisher","first-page":"197","DOI":"10.1146\/annurev-genet-102108-134304","volume":"43","author":"WL Ng","year":"2009","unstructured":"Ng WL, Bassler BL (2009) Bacterial quorum-sensing network architectures. Annu Rev Genet 43:197\u2013222. https:\/\/doi.org\/10.1146\/annurev-genet-102108-134304","journal-title":"Annu Rev Genet"},{"issue":"2","key":"11935_CR46","doi-asserted-by":"publisher","first-page":"87","DOI":"10.1111\/j.1574-695X.1999.tb01227.x","volume":"23","author":"VS Oca\u00f1a","year":"1999","unstructured":"Oca\u00f1a VS, de Ruiz Holgado AA, Nader-Mac\u00edas ME (1999) Growth inhibition of Staphylococcus aureus by H2O2-producing Lactobacillus paracasei subsp. paracasei isolated from the human vagina. FEMS Immunol Med Microbiol 23(2):87\u201392. https:\/\/doi.org\/10.1111\/j.1574-695X.1999.tb01227.x","journal-title":"FEMS Immunol Med Microbiol"},{"issue":"1\u20132","key":"11935_CR47","doi-asserted-by":"publisher","first-page":"135","DOI":"10.1016\/s0168-1605(01)00465-2","volume":"68","author":"M Ogawa","year":"2001","unstructured":"Ogawa M, Shimizu K, Nomoto K, Tanaka R, Hamabata T, Yamasaki S, Takeda T, Takeda Y (2001) Inhibition of in vitro growth of Shiga toxin-producing Escherichia coli O157:H7 by probiotic Lactobacillus strains due to production of lactic acid. Int J Food Microbiol 68(1\u20132):135\u2013140. https:\/\/doi.org\/10.1016\/s0168-1605(01)00465-2","journal-title":"Int J Food Microbiol"},{"issue":"3","key":"11935_CR48","doi-asserted-by":"publisher","first-page":"485","DOI":"10.1086\/318070","volume":"183","author":"J Osset","year":"2001","unstructured":"Osset J, Bartolom\u00e9 RM, Garc\u00eda E, Andreu A (2001) Assessment of the capacity of Lactobacillus to inhibit the growth of uropathogens and block their adhesion to vaginal epithelial cells. J Infect Dis 183(3):485\u2013491. https:\/\/doi.org\/10.1086\/318070","journal-title":"J Infect Dis"},{"issue":"6","key":"11935_CR49","doi-asserted-by":"publisher","first-page":"2214","DOI":"10.1128\/JB.188.6.2214-2221.2006","volume":"188","author":"DK Park","year":"2006","unstructured":"Park DK, Lee KE, Baek CH, Kim IH, Kwon JH, Lee WK, Lee KH, Kim BS, Choi SH, Kim KS (2006) Cyclo(Phe-Pro) modulates the expression of ompU in Vibrio spp. J Bacteriol 188(6):2214\u20132221. https:\/\/doi.org\/10.1128\/JB.188.6.2214-2221.2006","journal-title":"J Bacteriol"},{"issue":"1","key":"11935_CR50","doi-asserted-by":"publisher","first-page":"27","DOI":"10.1016\/j.tim.2004.11.007","volume":"13","author":"MR Parsek","year":"2005","unstructured":"Parsek MR, Greenberg EP (2005) Sociomicrobiology: the connections between quorum sensing and biofilms. Trends Microbiol 13(1):27\u201333. https:\/\/doi.org\/10.1016\/j.tim.2004.11.007","journal-title":"Trends Microbiol"},{"issue":"1","key":"11935_CR51","doi-asserted-by":"publisher","first-page":"13","DOI":"10.4315\/0022-2747-33.1.13","volume":"33","author":"RJ Price","year":"1970","unstructured":"Price RJ, Lee JS (1970) Inhibition of Pseudomonas species by hydrogen peroxide producing Lactobacilli. J Milk Food Technol 33(1):13\u201318. https:\/\/doi.org\/10.4315\/0022-2747-33.1.13","journal-title":"J Milk Food Technol"},{"key":"11935_CR52","doi-asserted-by":"publisher","first-page":"881","DOI":"10.1146\/annurev.micro.54.1.881","volume":"54","author":"C Ratledge","year":"2000","unstructured":"Ratledge C, Dover LG (2000) Iron metabolism in pathogenic bacteria. Annu Rev Microbiol 54:881\u2013941. https:\/\/doi.org\/10.1146\/annurev.micro.54.1.881","journal-title":"Annu Rev Microbiol"},{"key":"11935_CR53","doi-asserted-by":"publisher","first-page":"2131","DOI":"10.3389\/fmicb.2019.02131","volume":"10","author":"FJ Reen","year":"2019","unstructured":"Reen FJ, Guti\u00e9rrez-Barranquero JA, McCarthy RR, Woods DF, Scarciglia S, Adams C, Fog Nielsen K, Gram L, O\u2019Gara F (2019) Quorum sensing signaling alters virulence potential and population dynamics in complex microbiome-host interactomes. Front Microbiol 10:2131. https:\/\/doi.org\/10.3389\/fmicb.2019.02131","journal-title":"Front Microbiol"},{"issue":"3","key":"11935_CR54","doi-asserted-by":"publisher","first-page":"445","DOI":"10.1128\/iai.7.3.445-456.1973","volume":"7","author":"HJ Rogers","year":"1973","unstructured":"Rogers HJ (1973) Iron-binding catechols and virulence in Escherichia coli. Infect Immun 7(3):445\u2013456. https:\/\/doi.org\/10.1128\/iai.7.3.445-456.1973","journal-title":"Infect Immun"},{"issue":"46","key":"11935_CR55","doi-asserted-by":"publisher","first-page":"34775","DOI":"10.1074\/jbc.M607844200","volume":"281","author":"JB Roh","year":"2006","unstructured":"Roh JB, Lee MA, Lee HJ, Kim SM, Cho Y, Kim YJ, Seok YJ, Park SJ, Lee KH (2006) Transcriptional regulatory cascade for elastase production in Vibrio vulnificus: LuxO activates luxT expression and LuxT represses smcR expression. J Biol Chem 281(46):34775\u201334784. https:\/\/doi.org\/10.1074\/jbc.M607844200","journal-title":"J Biol Chem"},{"issue":"12","key":"11935_CR56","doi-asserted-by":"publisher","first-page":"1468","DOI":"10.1101\/gad.899601","volume":"15","author":"S Schauder","year":"2001","unstructured":"Schauder S, Bassler BL (2001) The languages of bacteria. Genes Dev 15(12):1468\u20131480. https:\/\/doi.org\/10.1101\/gad.899601","journal-title":"Genes Dev"},{"issue":"10","key":"11935_CR57","doi-asserted-by":"publisher","first-page":"2557","DOI":"10.1128\/jb.01259-10","volume":"193","author":"CP Shao","year":"2011","unstructured":"Shao CP, Lo HR, Lin JH, Hor LI (2011) Regulation of cytotoxicity by quorum-sensing signaling in Vibrio vulnificus is mediated by SmcR, a repressor of hlyU. J Bacteriol 193(10):2557\u20132565. https:\/\/doi.org\/10.1128\/jb.01259-10","journal-title":"J Bacteriol"},{"issue":"2","key":"11935_CR58","doi-asserted-by":"publisher","first-page":"239","DOI":"10.3168\/jds.S0022-0302(70)86186-0","volume":"53","author":"KM Sorrells","year":"1970","unstructured":"Sorrells KM, Speck ML (1970) Inhibition of Salmonella gallinarum by culture filtrates of Leuconostoc citrovorum. J Dairy Sci 53(2):239\u2013241. https:\/\/doi.org\/10.3168\/jds.S0022-0302(70)86186-0","journal-title":"J Dairy Sci"},{"issue":"10","key":"11935_CR59","doi-asserted-by":"publisher","first-page":"5785","DOI":"10.1128\/IAI.68.10.5785-5793.2000","volume":"68","author":"AM Starks","year":"2000","unstructured":"Starks AM, Schoeb TR, Tamplin ML, Parveen S, Doyle TJ, Bomeisl PE, Escudero GM, Gulig PA (2000) Pathogenesis of infection by clinical and environmental strains of Vibrio vulnificus in iron-dextran-treated mice. Infect Immun 68(10):5785\u20135793. https:\/\/doi.org\/10.1128\/IAI.68.10.5785-5793.2000","journal-title":"Infect Immun"},{"issue":"2","key":"11935_CR60","doi-asserted-by":"publisher","first-page":"177","DOI":"10.1016\/s1286-4579(00)00270-7","volume":"2","author":"MS Strom","year":"2000","unstructured":"Strom MS, Paranjpye RN (2000) Epidemiology and pathogenesis of Vibrio vulnificus. Microbes Infect 2(2):177\u2013188. https:\/\/doi.org\/10.1016\/s1286-4579(00)00270-7","journal-title":"Microbes Infect"},{"issue":"32","key":"11935_CR61","doi-asserted-by":"publisher","first-page":"26727","DOI":"10.1074\/jbc.M112.374165","volume":"287","author":"Y Wen","year":"2012","unstructured":"Wen Y, Kim IH, Son JS, Lee BH, Kim KS (2012) Iron and quorum sensing coordinately regulate the expression of vulnibactin biosynthesis in Vibrio vulnificus. J Biol Chem 287(32):26727\u201326739. https:\/\/doi.org\/10.1074\/jbc.M112.374165","journal-title":"J Biol Chem"},{"issue":"3655","key":"11935_CR62","doi-asserted-by":"publisher","first-page":"250","DOI":"10.1126\/science.147.3655.250","volume":"147","author":"RH Whittaker","year":"1965","unstructured":"Whittaker RH (1965) Dominance and diversity in land plant communities. Science 147(3655):250\u2013260. https:\/\/doi.org\/10.1126\/science.147.3655.250","journal-title":"Science"},{"issue":"2","key":"11935_CR63","doi-asserted-by":"publisher","first-page":"503","DOI":"10.1128\/iai.34.2.503-507.1981","volume":"34","author":"AC Wright","year":"1981","unstructured":"Wright AC, Sompson LM, Oliver JD (1981) Role of iron in the pathogenisis of Vibrio vulnificus injection. Infect Immun 34(2):503\u2013507. https:\/\/doi.org\/10.1128\/iai.34.2.503-507.1981","journal-title":"Infect Immun"},{"issue":"1","key":"11935_CR64","doi-asserted-by":"publisher","first-page":"30","DOI":"10.1111\/1574-6968.12050","volume":"339","author":"ZQ Yang","year":"2013","unstructured":"Yang ZQ, Jin CJ, Gao L, Fang WM, Gu RX, Qian JY, Jiao XA (2013) Alleviating effects of Lactobacillus strains on pathogenic Vibrio parahaemolyticus-induced intestinal fluid accumulation in the mouse model. FEMS Microbiol Lett 339(1):30\u201338. https:\/\/doi.org\/10.1111\/1574-6968.12050","journal-title":"FEMS Microbiol Lett"},{"issue":"5","key":"11935_CR65","doi-asserted-by":"publisher","first-page":"1613","DOI":"10.1099\/ijsem.0.001755","volume":"67","author":"SH Yoon","year":"2017","unstructured":"Yoon SH, Ha SM, Kwon S, Lim J, Kim Y, Seo H, Chun J (2017) Introducing EzBioCloud: a taxonomically united database of 16S rRNA gene sequences and whole-genome assemblies. Int J Syst Evol Microbiol 67(5):1613\u20131617. https:\/\/doi.org\/10.1099\/ijsem.0.001755","journal-title":"Int J Syst Evol Microbiol"},{"issue":"1","key":"11935_CR66","doi-asserted-by":"publisher","first-page":"132","DOI":"10.1186\/s40168-019-0746-y","volume":"7","author":"JS You","year":"2019","unstructured":"You JS, Yong JH, Kim GH, Moon S, Nam KT, Ryu JH, Yoon MY, Yoon SS (2019) Commensal-derived metabolites govern Vibrio cholerae pathogenesis in host intestine. Microbiome 7(1):132. https:\/\/doi.org\/10.1186\/s40168-019-0746-y","journal-title":"Microbiome"}],"container-title":["Applied Microbiology and Biotechnology"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/link.springer.com\/content\/pdf\/10.1007\/s00253-022-11935-w.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/link.springer.com\/article\/10.1007\/s00253-022-11935-w\/fulltext.html","content-type":"text\/html","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/link.springer.com\/content\/pdf\/10.1007\/s00253-022-11935-w.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2022,5,31]],"date-time":"2022-05-31T03:33:11Z","timestamp":1653967991000},"score":1,"resource":{"primary":{"URL":"https:\/\/link.springer.com\/10.1007\/s00253-022-11935-w"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2022,4,30]]},"references-count":66,"journal-issue":{"issue":"9-10","published-print":{"date-parts":[[2022,5]]}},"alternative-id":["11935"],"URL":"https:\/\/doi.org\/10.1007\/s00253-022-11935-w","relation":{},"ISSN":["0175-7598","1432-0614"],"issn-type":[{"value":"0175-7598","type":"print"},{"value":"1432-0614","type":"electronic"}],"subject":[],"published":{"date-parts":[[2022,4,30]]},"assertion":[{"value":"25 October 2021","order":1,"name":"received","label":"Received","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"11 April 2022","order":2,"name":"revised","label":"Revised","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"20 April 2022","order":3,"name":"accepted","label":"Accepted","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"30 April 2022","order":4,"name":"first_online","label":"First Online","group":{"name":"ArticleHistory","label":"Article History"}},{"order":1,"name":"Ethics","group":{"name":"EthicsHeading","label":"Declarations"}},{"value":"This work was performed under the approval of the Institutional Animal Care & Use Committee of Sogang University (IACUCSGU2020-1).","order":2,"name":"Ethics","group":{"name":"EthicsHeading","label":"Ethics approval"}},{"value":"The authors declare no competing interests.","order":3,"name":"Ethics","group":{"name":"EthicsHeading","label":"Conflict of interest"}}]}}