{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,8,8]],"date-time":"2026-08-08T15:59:35Z","timestamp":1786204775472,"version":"build-2736575974"},"reference-count":59,"publisher":"Springer Science and Business Media LLC","issue":"12","license":[{"start":{"date-parts":[[2022,6,1]],"date-time":"2022-06-01T00:00:00Z","timestamp":1654041600000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.springer.com\/tdm"},{"start":{"date-parts":[[2022,6,1]],"date-time":"2022-06-01T00:00:00Z","timestamp":1654041600000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/www.springer.com\/tdm"}],"funder":[{"DOI":"10.13039\/501100004585","name":"Vysok\u00e9 U\u010den\u00ed Technick\u00e9 v Brn\u011b","doi-asserted-by":"publisher","award":["FCH\/FEKT-J-21-7331"],"award-info":[{"award-number":["FCH\/FEKT-J-21-7331"]}],"id":[{"id":"10.13039\/501100004585","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":["link.springer.com"],"crossmark-restriction":false},"short-container-title":["Appl Microbiol Biotechnol"],"published-print":{"date-parts":[[2022,6]]},"DOI":"10.1007\/s00253-022-12039-1","type":"journal-article","created":{"date-parts":[[2022,6,27]],"date-time":"2022-06-27T04:02:38Z","timestamp":1656302558000},"page":"4669-4681","update-policy":"https:\/\/doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":7,"title":["Novel thermophilic polyhydroxyalkanoates producing strain Aneurinibacillus thermoaerophilus CCM 8960"],"prefix":"10.1007","volume":"106","author":[{"given":"Jana","family":"Musilova","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Xenie","family":"Kourilova","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Iva","family":"Pernicova","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Matej","family":"Bezdicek","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Martina","family":"Lengerova","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Stanislav","family":"Obruca","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-8269-4020","authenticated-orcid":false,"given":"Karel","family":"Sedlar","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"297","published-online":{"date-parts":[[2022,6,27]]},"reference":[{"key":"12039_CR1","doi-asserted-by":"publisher","first-page":"D7","DOI":"10.1093\/NAR\/GKV1290","volume":"44","author":"R Agarwala","year":"2016","unstructured":"Agarwala R, Barrett T, Beck J, Benson DA, Bollin C, Bolton E, Bourexis D, Brister JR, Bryant SH, Canese K, Charowhas C, Clark K, Dicuccio M, Dondoshansky I, Federhen S, Feolo M, Funk K, Geer LY, Gorelenkov V, Hoeppner M, Holmes B, Johnson M, Khotomlianski V, Kimchi A, Kimelman M, Kitts P, Klimke W, Krasnov S, Kuznetsov A, Landrum MJ, Landsman D, Lee JM, Lipman DJ, Lu Z, Madden TL, Madej T, Marchler-Bauer A, Karsch-Mizrachi I, Murphy T, Orris R, Ostell J, O\u2019sullivan C, Panchenko A, Phan L, Preuss D, Pruitt KD, Rodarmer K, Rubinstein W, Sayers E, Schneider V, Schuler GD, Sherry ST, Sirotkin K, Siyan K, Slotta D, Soboleva A, Soussov V, Starchenko G, Tatusova TA, Todorov K, Trawick BW, Vakatov D, Wang Y, Ward M, Wilbur WJ, Yaschenko E, Zbicz K (2016) Database resources of the National Center for Biotechnology Information. Nucleic Acids Res 44:D7. https:\/\/doi.org\/10.1093\/NAR\/GKV1290","journal-title":"Nucleic Acids Res"},{"key":"12039_CR2","doi-asserted-by":"publisher","first-page":"D517","DOI":"10.1093\/nar\/gkz935","volume":"48","author":"BP Alcock","year":"2020","unstructured":"Alcock BP, Raphenya AR, Lau TTY, Tsang KK, Bouchard M, Edalatmand A, Huynh W, Nguyen ALV, Cheng AA, Liu S, Min SY, Miroshnichenko A, Tran HK, Werfalli RE, Nasir JA, Oloni M, Speicher DJ, Florescu A, Singh B, Faltyn M, Hernandez-Koutoucheva A, Sharma AN, Bordeleau E, Pawlowski AC, Zubyk HL, Dooley D, Griffiths E, Maguire F, Winsor GL, Beiko RG, Brinkman FSL, Hsiao WWL, Domselaar GV, McArthur AG (2020) CARD 2020: antibiotic resistome surveillance with the comprehensive antibiotic resistance database. Nucleic Acids Res 48:D517\u2013D525. https:\/\/doi.org\/10.1093\/nar\/gkz935","journal-title":"Nucleic Acids Res"},{"key":"12039_CR3","doi-asserted-by":"publisher","first-page":"47","DOI":"10.1016\/J.NBT.2016.05.003","volume":"34","author":"D Alsafadi","year":"2017","unstructured":"Alsafadi D, Al-Mashaqbeh O (2017) A one-stage cultivation process for the production of poly-3-(hydroxybutyrate-co-hydroxyvalerate) from olive mill wastewater by Haloferax mediterranei. N Biotechnol 34:47\u201353. https:\/\/doi.org\/10.1016\/J.NBT.2016.05.003","journal-title":"N Biotechnol"},{"key":"12039_CR4","doi-asserted-by":"publisher","first-page":"403","DOI":"10.1016\/S0022-2836(05)80360-2","volume":"215","author":"SF Altschul","year":"1990","unstructured":"Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ (1990) Basic local alignment search tool. J Mol Biol 215:403\u2013410. https:\/\/doi.org\/10.1016\/S0022-2836(05)80360-2","journal-title":"J Mol Biol"},{"key":"12039_CR5","doi-asserted-by":"publisher","first-page":"W16","DOI":"10.1093\/nar\/gkw387","volume":"44","author":"D Arndt","year":"2016","unstructured":"Arndt D, Grant JR, Marcu A, Sajed T, Pon A, Liang Y, Wishart DS (2016) PHASTER: a better, faster version of the PHAST phage search tool. Nucleic Acids Res 44:W16\u2013W21. https:\/\/doi.org\/10.1093\/nar\/gkw387","journal-title":"Nucleic Acids Res"},{"key":"12039_CR6","doi-asserted-by":"publisher","first-page":"2834","DOI":"10.1093\/BIOINFORMATICS\/BTAB203","volume":"37","author":"TL Bailey","year":"2021","unstructured":"Bailey TL (2021) STREME: accurate and versatile sequence motif discovery. Bioinformatics 37:2834\u20132840. https:\/\/doi.org\/10.1093\/BIOINFORMATICS\/BTAB203","journal-title":"Bioinformatics"},{"key":"12039_CR7","doi-asserted-by":"publisher","first-page":"356","DOI":"10.1186\/s12864-016-2627-0","volume":"17","author":"A Biswas","year":"2016","unstructured":"Biswas A, Staals RHJ, Morales SE, Fineran PC, Brown CM (2016) CRISPRDetect: a flexible algorithm to define CRISPR arrays. BMC Genomics 17:356. https:\/\/doi.org\/10.1186\/s12864-016-2627-0","journal-title":"BMC Genomics"},{"key":"12039_CR8","doi-asserted-by":"publisher","first-page":"2114","DOI":"10.1093\/bioinformatics\/btu170","volume":"30","author":"AM Bolger","year":"2014","unstructured":"Bolger AM, Lohse M, Usadel B (2014) Trimmomatic: a flexible trimmer for Illumina sequence data. Bioinformatics 30:2114\u20132120. https:\/\/doi.org\/10.1093\/bioinformatics\/btu170","journal-title":"Bioinformatics"},{"key":"12039_CR9","doi-asserted-by":"publisher","first-page":"119","DOI":"10.1093\/bioinformatics\/btn578","volume":"25","author":"T Carver","year":"2009","unstructured":"Carver T, Thomson N, Bleasby A, Berriman M, Parkhill J (2009) DNAPlotter: circular and linear interactive genome visualization. Bioinformatics 25:119\u2013120. https:\/\/doi.org\/10.1093\/bioinformatics\/btn578","journal-title":"Bioinformatics"},{"issue":"7","key":"12039_CR10","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1038\/s41598-017-05509-4","volume":"71","author":"MF Chek","year":"2017","unstructured":"Chek MF, Kim SY, Mori T, Arsad H, Samian MR, Sudesh K (2017) Hakoshima T (2017) Structure of polyhydroxyalkanoate (PHA) synthase PhaC from Chromobacterium sp USM2, producing biodegradable plastics. Sci Reports 71(7):1\u201315. https:\/\/doi.org\/10.1038\/s41598-017-05509-4","journal-title":"Sci Reports"},{"key":"12039_CR11","doi-asserted-by":"publisher","first-page":"565","DOI":"10.1016\/J.TIBTECH.2015.07.007","volume":"33","author":"GQ Chen","year":"2015","unstructured":"Chen GQ, Hajnal I, Wu H, Lv L, Ye J (2015) Engineering biosynthesis mechanisms for diversifying polyhydroxyalkanoates. Trends Biotechnol 33:565\u2013574. https:\/\/doi.org\/10.1016\/J.TIBTECH.2015.07.007","journal-title":"Trends Biotechnol"},{"key":"12039_CR12","doi-asserted-by":"publisher","first-page":"94","DOI":"10.1016\/J.COPBIO.2017.11.016","volume":"50","author":"GQ Chen","year":"2018","unstructured":"Chen GQ, Jiang XR (2018) Next generation industrial biotechnology based on extremophilic bacteria. Curr Opin Biotechnol 50:94\u2013100. https:\/\/doi.org\/10.1016\/J.COPBIO.2017.11.016","journal-title":"Curr Opin Biotechnol"},{"key":"12039_CR13","doi-asserted-by":"publisher","first-page":"D751","DOI":"10.1093\/NAR\/GKAA939","volume":"49","author":"IMA Chen","year":"2021","unstructured":"Chen IMA, Chu K, Palaniappan K, Ratner A, Huang J, Huntemann M, Hajek P, Ritter S, Varghese N, Seshadri R, Roux S, Woyke T, Eloe-Fadrosh EA, Ivanova NN, Kyrpides NC (2021) The IMG\/M data management and analysis system vol 6.0: new tools and advanced capabilities. Nucleic Acids Res 49:D751\u2013D763. https:\/\/doi.org\/10.1093\/NAR\/GKAA939","journal-title":"Nucleic Acids Res"},{"key":"12039_CR14","doi-asserted-by":"publisher","first-page":"396","DOI":"10.12688\/f1000research.7432.1","volume":"5","author":"JA Coker","year":"2016","unstructured":"Coker JA (2016) Extremophiles and biotechnology current uses and prospects. F1000 Research 5:396","journal-title":"F1000 Research"},{"key":"12039_CR15","doi-asserted-by":"publisher","first-page":"3047","DOI":"10.1093\/bioinformatics\/btw354","volume":"32","author":"P Ewels","year":"2016","unstructured":"Ewels P, Magnusson M, Lundin S, K\u00e4ller M (2016) MultiQC: summarize analysis results for multiple tools and samples in a single report. Bioinformatics 32:3047\u20133048. https:\/\/doi.org\/10.1093\/bioinformatics\/btw354","journal-title":"Bioinformatics"},{"key":"12039_CR16","doi-asserted-by":"publisher","first-page":"116","DOI":"10.1186\/s12866-017-1014-6","volume":"17","author":"P Fu","year":"2017","unstructured":"Fu P, Ge Y, Wu Y, Zhao N, Yuan Z, Hu X (2017) The LspC3\u201341I restriction-modification system is the major determinant for genetic manipulations of Lysinibacillus sphaericus C3\u201341. BMC Microbiol 17:116. https:\/\/doi.org\/10.1186\/s12866-017-1014-6","journal-title":"BMC Microbiol"},{"key":"12039_CR17","doi-asserted-by":"publisher","unstructured":"Ho MR, Chen C houh, Lin W chang (2010) Gene-oriented ortholog database: a functional comparison platform for orthologous loci. Database J Biol Databases Curation 2010.\u00a0https:\/\/doi.org\/10.1093\/DATABASE\/BAQ002","DOI":"10.1093\/DATABASE\/BAQ002"},{"key":"12039_CR18","doi-asserted-by":"publisher","first-page":"D309","DOI":"10.1093\/nar\/gky1085","volume":"47","author":"J Huerta-Cepas","year":"2019","unstructured":"Huerta-Cepas J, Szklarczyk D, Heller D, Hern\u00e1ndez-Plaza A, Forslund SK, Cook H, Mende DR, Letunic I, Rattei T, Jensen LJ, Von Mering C, Bork P (2019) EggNOG 5.0: a hierarchical, functionally and phylogenetically annotated orthology resource based on 5090 organisms and 2502 viruses. Nucleic Acids Res 47:D309\u2013D314. https:\/\/doi.org\/10.1093\/nar\/gky1085","journal-title":"Nucleic Acids Res"},{"key":"12039_CR19","doi-asserted-by":"publisher","first-page":"D545","DOI":"10.1093\/NAR\/GKAA970","volume":"49","author":"M Kanehisa","year":"2021","unstructured":"Kanehisa M, Furumichi M, Sato Y, Ishiguro-Watanabe M, Tanabe M (2021) KEGG: integrating viruses and cellular organisms. Nucleic Acids Res 49:D545\u2013D551. https:\/\/doi.org\/10.1093\/NAR\/GKAA970","journal-title":"Nucleic Acids Res"},{"key":"12039_CR20","doi-asserted-by":"publisher","first-page":"1085","DOI":"10.1093\/BIB\/BBX085","volume":"20","author":"PD Karp","year":"2019","unstructured":"Karp PD, Billington R, Caspi R, Fulcher CA, Latendresse M, Kothari A, Keseler IM, Krummenacker M, Midford PE, Ong Q, Ong WK, Paley SM, Subhraveti P (2019) The BioCyc collection of microbial genomes and metabolic pathways. Brief Bioinform 20:1085\u20131093. https:\/\/doi.org\/10.1093\/BIB\/BBX085","journal-title":"Brief Bioinform"},{"key":"12039_CR21","doi-asserted-by":"publisher","first-page":"40","DOI":"10.1093\/bib\/bbp043","volume":"11","author":"PD Karp","year":"2015","unstructured":"Karp PD, Paley SM, Midford PE, Krummenacker M, Billington R, Kothari A, Ong WK, Subhraveti P, Keseler IM, Caspi R (2015) Pathway Tools version 24.0: integrated software for pathway\/genome informatics and systems biology. Brief Bioinform 11:40\u201379","journal-title":"Brief Bioinform"},{"key":"12039_CR22","doi-asserted-by":"publisher","first-page":"1627","DOI":"10.1080\/09168451.2017.1325314","volume":"81","author":"T Kihara","year":"2017","unstructured":"Kihara T, Hiroe A, Ishii-Hyakutake M, Mizuno K, Tsuge T (2017) Bacillus cereus-type polyhydroxyalkanoate biosynthetic gene cluster contains R-specific enoyl-CoA hydratase gene. OUP 81:1627\u20131635. https:\/\/doi.org\/10.1080\/09168451.2017.1325314","journal-title":"OUP"},{"issue":"10","key":"12039_CR23","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1186\/1471-2105-10-89","volume":"101","author":"M Knoll","year":"2009","unstructured":"Knoll M, Hamm TM, Wagner F, Martinez V, Pleiss J (2009) The PHA Depolymerase Engineering Database: a systematic analysis tool for the diverse family of polyhydroxyalkanoate (PHA) depolymerases. BMC Bioinforma 101(10):1\u20138. https:\/\/doi.org\/10.1186\/1471-2105-10-89","journal-title":"BMC Bioinforma"},{"key":"12039_CR24","doi-asserted-by":"publisher","first-page":"14","DOI":"10.1186\/s13068-016-0436-y","volume":"9","author":"J Kolek","year":"2016","unstructured":"Kolek J, Sedlar K, Provaznik I, Patakova P (2016) Dam and Dcm methylations prevent gene transfer into Clostridium pasteurianum NRRL B-598: development of methods for electrotransformation, conjugation, and sonoporation. Biotechnol Biofuels 9:14. https:\/\/doi.org\/10.1186\/s13068-016-0436-y","journal-title":"Biotechnol Biofuels"},{"key":"12039_CR25","doi-asserted-by":"publisher","first-page":"24","DOI":"10.1016\/J.NBT.2016.05.001","volume":"37","author":"M Koller","year":"2017","unstructured":"Koller M, Mar\u0161\u00e1lek L, de Sousa Dias MM, Braunegg G (2017) Producing microbial polyhydroxyalkanoate (PHA) biopolyesters in a sustainable manner. N Biotechnol 37:24\u201338. https:\/\/doi.org\/10.1016\/J.NBT.2016.05.001","journal-title":"N Biotechnol"},{"key":"12039_CR26","doi-asserted-by":"publisher","first-page":"523","DOI":"10.1093\/bioinformatics\/bty654","volume":"35","author":"R Lanfear","year":"2019","unstructured":"Lanfear R, Schalamun M, Kainer D, Wang W, Schwessinger B (2019) MinIONQC: fast and simple quality control for MinION sequencing data. Bioinformatics 35:523\u2013525. https:\/\/doi.org\/10.1093\/bioinformatics\/bty654","journal-title":"Bioinformatics"},{"key":"12039_CR27","doi-asserted-by":"publisher","first-page":"D1115","DOI":"10.1093\/NAR\/GKAB959","volume":"50","author":"BT Lee","year":"2022","unstructured":"Lee BT, Barber GP, Benet-Pag\u00e8s A, Casper J, Clawson H, Diekhans M, Fischer C, Gonzalez JN, Hinrichs AS, Lee CM, Muthuraman P, Nassar LR, Nguy B, Pereira T, Perez G, Raney BJ, Rosenbloom KR, Schmelter D, Speir ML, Wick BD, Zweig AS, Haussler D, Kuhn RM, Haeussler M, Kent WJ (2022) The UCSC Genome Browser database: 2022 update. Nucleic Acids Res 50:D1115\u2013D1122. https:\/\/doi.org\/10.1093\/NAR\/GKAB959","journal-title":"Nucleic Acids Res"},{"key":"12039_CR28","doi-asserted-by":"publisher","unstructured":"Li H (2013) Aligning sequence reads, clone sequences and assembly contigs with BWA-MEM. arXiv:1303.3997v2 [q-bio.GN]. https:\/\/doi.org\/10.48550\/arXiv.1303.3997","DOI":"10.48550\/arXiv.1303.3997"},{"key":"12039_CR29","doi-asserted-by":"publisher","first-page":"3094","DOI":"10.1093\/bioinformatics\/bty191","volume":"34","author":"H Li","year":"2018","unstructured":"Li H (2018) Minimap2: pairwise alignment for nucleotide sequences. Bioinformatics 34:3094\u20133100. https:\/\/doi.org\/10.1093\/bioinformatics\/bty191","journal-title":"Bioinformatics"},{"key":"12039_CR30","doi-asserted-by":"publisher","first-page":"2078","DOI":"10.1093\/bioinformatics\/btp352","volume":"25","author":"H Li","year":"2009","unstructured":"Li H, Handsaker B, Wysoker A, Fennell T, Ruan J, Homer N, Marth G, Abecasis G, Durbin R (2009) The sequence alignment\/map format and SAMtools. Bioinformatics 25:2078\u20132079. https:\/\/doi.org\/10.1093\/bioinformatics\/btp352","journal-title":"Bioinformatics"},{"key":"12039_CR31","doi-asserted-by":"publisher","first-page":"e88339","DOI":"10.1371\/journal.pone.0088339","volume":"9","author":"X-Q Li","year":"2014","unstructured":"Li X-Q, Du D (2014) Variation, evolution, and correlation analysis of C+G content and genome or chromosome size in different kingdoms and phyla. PLoS ONE 9:e88339. https:\/\/doi.org\/10.1371\/journal.pone.0088339","journal-title":"PLoS ONE"},{"key":"12039_CR32","doi-asserted-by":"publisher","first-page":"1114","DOI":"10.1093\/bib\/bbx174","volume":"20","author":"H Luo","year":"2019","unstructured":"Luo H, Quan C-L, Peng C, Gao F (2019) Recent development of Ori-Finder system and DoriC database for microbial replication origins. Brief Bioinform 20:1114\u20131124. https:\/\/doi.org\/10.1093\/bib\/bbx174","journal-title":"Brief Bioinform"},{"key":"12039_CR33","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1017\/S1473550416000483","volume":"17","author":"A Martin","year":"2018","unstructured":"Martin A, McMinn A (2018) Sea ice, extremophiles and life on extra-terrestrial ocean worlds. Int J Astrobiol 17:1\u201316. https:\/\/doi.org\/10.1017\/S1473550416000483","journal-title":"Int J Astrobiol"},{"key":"12039_CR34","doi-asserted-by":"publisher","unstructured":"Meier-Kolthoff JP, G\u00f6ker M (2019) TYGS is an automated high-throughput platform for state-of-the-art genome-based taxonomy. Nat Commun 101(10):1\u201310. https:\/\/doi.org\/10.1038\/s41467-019-10210-3","DOI":"10.1038\/s41467-019-10210-3"},{"key":"12039_CR35","doi-asserted-by":"publisher","first-page":"4586","DOI":"10.1093\/BIOINFORMATICS\/BTZ276","volume":"35","author":"P Ni","year":"2019","unstructured":"Ni P, Huang N, Zhang Z, Wang DP, Liang F, Miao Y, Le XC, Luo F, Wang J (2019) DeepSignal: detecting DNA methylation state from Nanopore sequencing reads using deep-learning. Bioinformatics 35:4586\u20134595. https:\/\/doi.org\/10.1093\/BIOINFORMATICS\/BTZ276","journal-title":"Bioinformatics"},{"key":"12039_CR36","doi-asserted-by":"publisher","first-page":"775","DOI":"10.1007\/S10529-013-1407-Z","volume":"36","author":"S Obruca","year":"2014","unstructured":"Obruca S, Benesova P, Oborna J, Marova I (2014) Application of protease-hydrolyzed whey as a complex nitrogen source to increase poly(3-hydroxybutyrate) production from oils by Cupriavidus necator. Biotechnol Lett 36:775\u2013781. https:\/\/doi.org\/10.1007\/S10529-013-1407-Z","journal-title":"Biotechnol Lett"},{"key":"12039_CR37","doi-asserted-by":"publisher","unstructured":"Obru\u010da S, Dvo\u0159\u00e1k P, Sedl\u00e1\u010dek P, Koller M, Sedl\u00e1\u0159 K, Pernicov\u00e1 I, \u0160afr\u00e1nek D (2022) Polyhydroxyalkanoates synthesis by halophiles and thermophiles: towards sustainable production of microbial bioplastics. Biotechnol Adv 107906.https:\/\/doi.org\/10.1016\/J.BIOTECHADV.2022.107906","DOI":"10.1016\/J.BIOTECHADV.2022.107906"},{"key":"12039_CR38","doi-asserted-by":"publisher","first-page":"856","DOI":"10.1016\/j.biotechadv.2017.12.006","volume":"36","author":"S Obruca","year":"2018","unstructured":"Obruca S, Sedlacek P, Koller M, Kucera D, Pernicova I (2018) Involvement of polyhydroxyalkanoates in stress resistance of microbial cells: biotechnological consequences and applications. Biotechnol Adv 36:856\u2013870","journal-title":"Biotechnol Adv"},{"key":"12039_CR39","doi-asserted-by":"publisher","unstructured":"Obulisamy PK, Mehariya S (2021) Polyhydroxyalkanoates from extremophiles: a review. Bioresour Technol 325.https:\/\/doi.org\/10.1016\/J.BIORTECH.2020.124653","DOI":"10.1016\/J.BIORTECH.2020.124653"},{"key":"12039_CR40","doi-asserted-by":"publisher","first-page":"122028","DOI":"10.1016\/J.BIORTECH.2019.122028","volume":"292","author":"I Pernicova","year":"2019","unstructured":"Pernicova I, Kucera D, Nebesarova J, Kalina M, Novackova I, Koller M, Obruca S (2019) Production of polyhydroxyalkanoates on waste frying oil employing selected Halomonas strains. Bioresour Technol 292:122028. https:\/\/doi.org\/10.1016\/J.BIORTECH.2019.122028","journal-title":"Bioresour Technol"},{"key":"12039_CR41","doi-asserted-by":"publisher","first-page":"1235","DOI":"10.3390\/POLYM12061235","volume":"12","author":"I Pernicova","year":"2020","unstructured":"Pernicova I, Novackova I, Sedlacek P, Kourilova X, Kalina M, Kovalcik A, Koller M, Nebesarova J, Krzyzanek V, Hrubanova K, Masilko J, Slaninova E, Obruca S (2020) Introducing the newly isolated bacterium Aneurinibacillus sp H1 as an auspicious thermophilic producer of various polyhydroxyalkanoates (PHA) copolymers-1 isolation and characterization of the bacterium. Polymers (Basel) 12:1235. https:\/\/doi.org\/10.3390\/POLYM12061235","journal-title":"Polymers (Basel)"},{"key":"12039_CR42","doi-asserted-by":"publisher","first-page":"698","DOI":"10.1016\/J.IJBIOMAC.2019.12.128","volume":"144","author":"I Pernicova","year":"2020","unstructured":"Pernicova I, Novackova I, Sedlacek P, Kourilova X, Koller M, Obruca S (2020b) Application of osmotic challenge for enrichment of microbial consortia in polyhydroxyalkanoates producing thermophilic and thermotolerant bacteria and their subsequent isolation. Int J Biol Macromol 144:698\u2013704. https:\/\/doi.org\/10.1016\/J.IJBIOMAC.2019.12.128","journal-title":"Int J Biol Macromol"},{"issue":"11","key":"12039_CR43","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1038\/s41598-021-87111-3","volume":"111","author":"EG Piligrimova","year":"2021","unstructured":"Piligrimova EG, Kazantseva OA, Kazantsev AN, Nikulin NA, Skorynina AV, Koposova ON (2021) Shadrin AM (2021) Putative plasmid prophages of Bacillus cereus sensu lato may hold the key to undiscovered phage diversity. Sci Reports 111(11):1\u201316. https:\/\/doi.org\/10.1038\/s41598-021-87111-3","journal-title":"Sci Reports"},{"key":"12039_CR44","doi-asserted-by":"publisher","first-page":"45","DOI":"10.1016\/J.IBIOD.2017.10.001","volume":"126","author":"ZA Raza","year":"2018","unstructured":"Raza ZA, Abid S, Banat IM (2018) Polyhydroxyalkanoates: characteristics, production, recent developments and applications. Int Biodeterior Biodegradation 126:45\u201356. https:\/\/doi.org\/10.1016\/J.IBIOD.2017.10.001","journal-title":"Int Biodeterior Biodegradation"},{"key":"12039_CR45","doi-asserted-by":"publisher","first-page":"D298","DOI":"10.1093\/nar\/gku1046","volume":"43","author":"RJ Roberts","year":"2015","unstructured":"Roberts RJ, Vincze T, Posfai J, Macelis D (2015) REBASE\u2014a database for DNA restriction and modification: enzymes, genes and genomes. Nucleic Acids Res 43:D298\u2013D299. https:\/\/doi.org\/10.1093\/nar\/gku1046","journal-title":"Nucleic Acids Res"},{"key":"12039_CR46","doi-asserted-by":"publisher","first-page":"944","DOI":"10.1093\/bioinformatics\/16.10.944","volume":"16","author":"K Rutherford","year":"2000","unstructured":"Rutherford K, Parkhill J, Crook J, Horsnell T, Rice P, Rajandream M-A, Barrell B (2000) Artemis: sequence visualization and annotation. Bioinformatics 16:944\u2013945. https:\/\/doi.org\/10.1093\/bioinformatics\/16.10.944","journal-title":"Bioinformatics"},{"key":"12039_CR47","doi-asserted-by":"publisher","unstructured":"Safran M, Rosen N, Twik M, BarShir R, Stein TI, Dahary D, Fishilevich S, Lancet D (2021) The GeneCards Suite. Pract Guid to Life Sci Databases 27\u201356.https:\/\/doi.org\/10.1007\/978-981-16-5812-9_2","DOI":"10.1007\/978-981-16-5812-9_2"},{"key":"12039_CR48","doi-asserted-by":"publisher","first-page":"1298","DOI":"10.3390\/POLYM12061298","volume":"12","author":"P Sedlacek","year":"2020","unstructured":"Sedlacek P, Pernicova I, Novackova I, Kourilova X, Kalina M, Kovalcik A, Koller M, Nebesarova J, Krzyzanek V, Hrubanova K, Masilko J, Slaninova E, Trudicova M, Obruca S (2020) Introducing the newly isolated bacterium Aneurinibacillus sp H1 as an auspicious thermophilic producer of various polyhydroxyalkanoates (PHA) copolymers-2 Material study on the produced copolymers. Polymers (Basel) 12:1298. https:\/\/doi.org\/10.3390\/POLYM12061298","journal-title":"Polymers (Basel)"},{"key":"12039_CR49","doi-asserted-by":"publisher","first-page":"2304","DOI":"10.1038\/ncomms3304","volume":"4","author":"N Segata","year":"2013","unstructured":"Segata N, B\u00f6rnigen D, Morgan XC, Huttenhower C (2013) PhyloPhlAn is a new method for improved phylogenetic and taxonomic placement of microbes. Nat Commun 4:2304. https:\/\/doi.org\/10.1038\/ncomms3304","journal-title":"Nat Commun"},{"key":"12039_CR50","doi-asserted-by":"publisher","first-page":"1425","DOI":"10.1111\/J.1365-2672.2007.03667.X","volume":"104","author":"C Simon-Colin","year":"2008","unstructured":"Simon-Colin C, Ragu\u00e9n\u00e8s G, Cozien J, Guezennec JG (2008) Halomonas profundus sp. nov., a new PHA-producing bacterium isolated from a deep-sea hydrothermal vent shrimp. J Appl Microbiol 104:1425\u20131432. https:\/\/doi.org\/10.1111\/J.1365-2672.2007.03667.X","journal-title":"J Appl Microbiol"},{"key":"12039_CR51","doi-asserted-by":"publisher","first-page":"W74","DOI":"10.1093\/nar\/gkz380","volume":"47","author":"W Song","year":"2019","unstructured":"Song W, Sun H-X, Zhang C, Cheng L, Peng Y, Deng Z, Wang D, Wang Y, Hu M, Liu W, Yang H, Shen Y, Li J, You L, Xiao M (2019) Prophage Hunter: an integrative hunting tool for active prophages. Nucleic Acids Res 47:W74\u2013W80. https:\/\/doi.org\/10.1093\/nar\/gkz380","journal-title":"Nucleic Acids Res"},{"key":"12039_CR52","doi-asserted-by":"publisher","first-page":"e1002195","DOI":"10.1371\/journal.pbio.1002195","volume":"13","author":"ZD Stephens","year":"2015","unstructured":"Stephens ZD, Lee SY, Faghri F, Campbell RH, Zhai C, Efron MJ, Iyer R, Schatz MC, Sinha S, Robinson GE (2015) Big data: astronomical or genomical? PLoS Biol 13:e1002195. https:\/\/doi.org\/10.1371\/journal.pbio.1002195","journal-title":"PLoS Biol"},{"key":"12039_CR53","doi-asserted-by":"publisher","first-page":"6614","DOI":"10.1093\/nar\/gkw569","volume":"44","author":"T Tatusova","year":"2016","unstructured":"Tatusova T, DiCuccio M, Badretdin A, Chetvernin V, Nawrocki EP, Zaslavsky L, Lomsadze A, Pruitt KD, Borodovsky M, Ostell J (2016) NCBI prokaryotic genome annotation pipeline. Nucleic Acids Res 44:6614\u20136624. https:\/\/doi.org\/10.1093\/nar\/gkw569","journal-title":"Nucleic Acids Res"},{"key":"12039_CR54","doi-asserted-by":"publisher","first-page":"6231","DOI":"10.1007\/S00253-015-6777-9\/FIGURES\/5","volume":"99","author":"T Tsuge","year":"2015","unstructured":"Tsuge T, Hyakutake M, Mizuno K (2015) Class IV polyhydroxyalkanoate (PHA) synthases and PHA-producing Bacillus. Appl Microbiol Biotechnol 99:6231\u20136240. https:\/\/doi.org\/10.1007\/S00253-015-6777-9\/FIGURES\/5","journal-title":"Appl Microbiol Biotechnol"},{"key":"12039_CR55","doi-asserted-by":"publisher","first-page":"257","DOI":"10.3389\/FBIOE.2020.00257\/BIBTEX","volume":"8","author":"C Utsunomia","year":"2020","unstructured":"Utsunomia C, Ren Q, Zinn M (2020) Poly(4-hydroxybutyrate): current state and perspectives. Front Bioeng Biotechnol 8:257. https:\/\/doi.org\/10.3389\/FBIOE.2020.00257\/BIBTEX","journal-title":"Front Bioeng Biotechnol"},{"key":"12039_CR56","doi-asserted-by":"publisher","first-page":"737","DOI":"10.1101\/gr.214270.116","volume":"27","author":"R Vaser","year":"2017","unstructured":"Vaser R, Sovi\u0107 I, Nagarajan N, \u0160iki\u0107 M (2017) Fast and accurate de novo genome assembly from long uncorrected reads. Genome Res 27:737\u2013746. https:\/\/doi.org\/10.1101\/gr.214270.116","journal-title":"Genome Res"},{"key":"12039_CR57","doi-asserted-by":"publisher","first-page":"e112963","DOI":"10.1371\/journal.pone.0112963","volume":"9","author":"BJ Walker","year":"2014","unstructured":"Walker BJ, Abeel T, Shea T, Priest M, Abouelliel A, Sakthikumar S, Cuomo CA, Zeng Q, Wortman J, Young SK, Earl AM (2014) Pilon: an integrated tool for comprehensive microbial variant detection and genome assembly improvement. PLoS ONE 9:e112963. https:\/\/doi.org\/10.1371\/journal.pone.0112963","journal-title":"PLoS ONE"},{"key":"12039_CR58","doi-asserted-by":"publisher","first-page":"D404","DOI":"10.1093\/NAR\/GKW1032","volume":"45","author":"K Wolstencroft","year":"2017","unstructured":"Wolstencroft K, Krebs O, Snoep JL, Stanford NJ, Bacall F, Golebiewski M, Kuzyakiv R, Nguyen Q, Owen S, Soiland-Reyes S, Straszewski J, Van Niekerk DD, Williams AR, Malmstr\u00f6m L, Rinn B, M\u00fcller W, Goble C (2017) FAIRDOMHub: a repository and collaboration environment for sharing systems biology research. Nucleic Acids Res 45:D404\u2013D407. https:\/\/doi.org\/10.1093\/NAR\/GKW1032","journal-title":"Nucleic Acids Res"},{"key":"12039_CR59","doi-asserted-by":"publisher","unstructured":"Zeldes BM, Keller MW, Loder AJ, Straub CT, Adams MWW, Kelly RM (2015) Extremely thermophilic microorganisms as metabolic engineering platforms for production of fuels and industrial chemicals. Front Microbiol 6. https:\/\/doi.org\/10.3389\/fmicb.2015.01209","DOI":"10.3389\/fmicb.2015.01209"}],"container-title":["Applied Microbiology and Biotechnology"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/link.springer.com\/content\/pdf\/10.1007\/s00253-022-12039-1.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/link.springer.com\/article\/10.1007\/s00253-022-12039-1\/fulltext.html","content-type":"text\/html","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/link.springer.com\/content\/pdf\/10.1007\/s00253-022-12039-1.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2022,7,7]],"date-time":"2022-07-07T02:15:40Z","timestamp":1657160140000},"score":1,"resource":{"primary":{"URL":"https:\/\/link.springer.com\/10.1007\/s00253-022-12039-1"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2022,6]]},"references-count":59,"journal-issue":{"issue":"12","published-print":{"date-parts":[[2022,6]]}},"alternative-id":["12039"],"URL":"https:\/\/doi.org\/10.1007\/s00253-022-12039-1","relation":{},"ISSN":["0175-7598","1432-0614"],"issn-type":[{"value":"0175-7598","type":"print"},{"value":"1432-0614","type":"electronic"}],"subject":[],"published":{"date-parts":[[2022,6]]},"assertion":[{"value":"14 March 2022","order":1,"name":"received","label":"Received","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"16 June 2022","order":2,"name":"revised","label":"Revised","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"18 June 2022","order":3,"name":"accepted","label":"Accepted","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"27 June 2022","order":4,"name":"first_online","label":"First Online","group":{"name":"ArticleHistory","label":"Article History"}},{"order":1,"name":"Ethics","group":{"name":"EthicsHeading","label":"Declarations"}},{"value":"This article does not contain any studies with human participants or animals performed by any of the authors.","order":2,"name":"Ethics","group":{"name":"EthicsHeading","label":"Ethical statement"}},{"value":"The authors declare no competing interests.","order":3,"name":"Ethics","group":{"name":"EthicsHeading","label":"Conflict of interest"}}]}}