{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,4,17]],"date-time":"2025-04-17T17:07:51Z","timestamp":1744909671739,"version":"3.37.3"},"reference-count":51,"publisher":"Springer Science and Business Media LLC","issue":"6","license":[{"start":{"date-parts":[[2024,4,17]],"date-time":"2024-04-17T00:00:00Z","timestamp":1713312000000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.springernature.com\/gp\/researchers\/text-and-data-mining"},{"start":{"date-parts":[[2024,4,17]],"date-time":"2024-04-17T00:00:00Z","timestamp":1713312000000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/www.springernature.com\/gp\/researchers\/text-and-data-mining"}],"funder":[{"DOI":"10.13039\/501100016234","name":"Universidad Aut\u00f3noma de Sinaloa","doi-asserted-by":"publisher","award":["PROFAPI2022\/PRO_A7_069"],"award-info":[{"award-number":["PROFAPI2022\/PRO_A7_069"]}],"id":[{"id":"10.13039\/501100016234","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":["link.springer.com"],"crossmark-restriction":false},"short-container-title":["Curr Microbiol"],"published-print":{"date-parts":[[2024,6]]},"DOI":"10.1007\/s00284-024-03680-2","type":"journal-article","created":{"date-parts":[[2024,4,17]],"date-time":"2024-04-17T18:01:41Z","timestamp":1713376901000},"update-policy":"https:\/\/doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":1,"title":["Genomic Approach of Listeria monocytogenes Strains Isolated from Deli-Meats in Mexico"],"prefix":"10.1007","volume":"81","author":[{"ORCID":"https:\/\/orcid.org\/0000-0002-9835-9665","authenticated-orcid":false,"given":"Maribel","family":"Jim\u00e9nez-Edeza","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-6609-5661","authenticated-orcid":false,"given":"Santiago Valentin","family":"Galv\u00e1n-Gordillo","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-9067-5316","authenticated-orcid":false,"given":"Ram\u00f3n","family":"Pacheco\u2011Arjona","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-8970-0035","authenticated-orcid":false,"given":"Gloria Marisol","family":"Casta\u00f1eda-Ruelas","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"297","published-online":{"date-parts":[[2024,4,17]]},"reference":[{"key":"3680_CR1","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1016\/j.tim.2021.01.008","volume":"1225","author":"O Disson","year":"2021","unstructured":"Disson O, Moura A, Lecuit M (2021) Making sense of the biodiversity and virulence of Listeria monocytogenes. Trends Microbiol 1225:1\u201312. https:\/\/doi.org\/10.1016\/j.tim.2021.01.008","journal-title":"Trends Microbiol"},{"key":"3680_CR2","doi-asserted-by":"publisher","DOI":"10.3389\/fmicb.2021.620033","volume":"12","author":"TD Bechtel","year":"2021","unstructured":"Bechtel TD, Gibbons JG (2021) Population Genomic analysis of Listeria monocytogenes from food reveal substrate-specific genome variation. Front Microbiol 12:620033. https:\/\/doi.org\/10.3389\/fmicb.2021.620033","journal-title":"Front Microbiol"},{"key":"3680_CR3","doi-asserted-by":"publisher","DOI":"10.1128\/microbiolspec.GPP3-0014-2018","author":"WF Schlech","year":"2019","unstructured":"Schlech WF (2019) Epidemiology and clinical manifestations of Listeria monocytogenes infection. Microbiol Spect. https:\/\/doi.org\/10.1128\/microbiolspec.GPP3-0014-2018","journal-title":"Microbiol Spect"},{"key":"3680_CR4","unstructured":"World Health Organization (WHO) (2021) Listeriosis. https:\/\/www.who.int\/es\/news-room\/fact-sheets\/detail\/listeriosis. Accessed 31 August 2022"},{"key":"3680_CR5","unstructured":"Center for Disease Control and Prevention (CDC) 2022 Listeriosis. https:\/\/www.cdc.gov\/listeria\/. Accessed 31 August 2022"},{"key":"3680_CR6","doi-asserted-by":"publisher","first-page":"5583","DOI":"10.1128\/AEM.01018-14","volume":"80","author":"K Linke","year":"2014","unstructured":"Linke K, R\u00fcckerl I, Brugger K, Karpiskova R, Walland J, Muri-Klinger S, Tichy A, Wagner M, Stessl B (2014) Reservoirs of Listeria species in three environmental ecosystems. Appl Environ Microbiol 80:5583\u20135592. https:\/\/doi.org\/10.1128\/AEM.01018-14","journal-title":"Appl Environ Microbiol"},{"key":"3680_CR7","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1111\/jfs.12732","volume":"40","author":"AJ Kayode","year":"2019","unstructured":"Kayode AJ, Igbinosa EO, Okoh AI (2019) Overview of listeriosis in the Southern African hemisphere-review. J Food Safety 40:1\u201322. https:\/\/doi.org\/10.1111\/jfs.12732","journal-title":"J Food Safety"},{"key":"3680_CR8","doi-asserted-by":"publisher","first-page":"1","DOI":"10.36877\/pmmb.a0000007","volume":"1","author":"V Letchumanan","year":"2018","unstructured":"Letchumanan V, Wong PC, Goh BH, Ming LC, Pusparajah P, Wong SH, Ab-Mutalib NS, Lee LH (2018) A review on the characteristics, taxonomy, and prevalence of Listeria monocytogenes. Prog Microbes Mol Biol 1:1\u20138. https:\/\/doi.org\/10.36877\/pmmb.a0000007","journal-title":"Prog Microbes Mol Biol"},{"key":"3680_CR9","doi-asserted-by":"publisher","first-page":"1","DOI":"10.3389\/fmicb.2019.02698","volume":"10","author":"BH Lee","year":"2019","unstructured":"Lee BH, Cole S, Badel-Berchoux S, Guillier L, Felix B, Krezdorn N, H\u00e9braud M, Bernardi T, Sultan I, Piveteau P (2019) Biofilm formation of Listeria monocytogenes strains under food processing environments and pan-genome-wide association study. Front Microbiol 10:1\u201318. https:\/\/doi.org\/10.3389\/fmicb.2019.02698","journal-title":"Front Microbiol"},{"key":"3680_CR10","doi-asserted-by":"publisher","first-page":"638","DOI":"10.3389\/fmicb.2016.00638","volume":"7","author":"JV Mart\u00ednez-Su\u00e1rez","year":"2016","unstructured":"Mart\u00ednez-Su\u00e1rez JV, Ortiz S, L\u00f3pez-Alonso V (2016) The potential impact of the resistance to quaternary ammonium disinfectants on the persistence of Listeria monocytogenes in food processing environments. Front Microbiol 7:638. https:\/\/doi.org\/10.3389\/fmicb.2016.00638","journal-title":"Front Microbiol"},{"key":"3680_CR11","doi-asserted-by":"publisher","first-page":"1277","DOI":"10.1111\/1541-4337.12387","volume":"17","author":"AN Olaimat","year":"2019","unstructured":"Olaimat AN, Al-Holy MA, Shahbaz HM, Al-Nabulsi AA, Abu Ghoush MH, Osaili TM, Ayyash MM, Holley RA (2019) emergence of antibiotic resistance in Listeria monocytogenes isolated from food products: a comprehensive review. Comp Rev 17:1277\u20131292. https:\/\/doi.org\/10.1111\/1541-4337.12387","journal-title":"Comp Rev"},{"key":"3680_CR12","doi-asserted-by":"publisher","first-page":"1412","DOI":"10.3389\/fmicb.2020.01412","volume":"11","author":"M Kurpas","year":"2020","unstructured":"Kurpas M, Osek J, Moura A, Leclercq A, Lecuit M, Wieczorek K (2020) Genomic characterization of Listeria monocytogenes Isolated from ready-to-eat meat and meat processing environments in Poland. Front Microbiol 11:1412. https:\/\/doi.org\/10.3389\/fmicb.2020.01412","journal-title":"Front Microbiol"},{"key":"3680_CR13","doi-asserted-by":"publisher","DOI":"10.1128\/mSphere.00252-19","author":"D Hurley","year":"2019","unstructured":"Hurley D, Luque-Sastre L, Parker CT, Huynh S, Eshwar AK, Nguyen SV, Andrews N, Moura A, Fox EM, Jordan K, Lehner A, Stephan R, Fanning S (2019) Whole-genome sequencing-based characterization of 100 Listeria monocytogenes isolates collected from food processing environments over four years. mSphere. https:\/\/doi.org\/10.1128\/mSphere.00252-19","journal-title":"mSphere"},{"key":"3680_CR14","doi-asserted-by":"publisher","first-page":"1","DOI":"10.3390\/microorganisms9091856","volume":"9","author":"N Unrath","year":"2021","unstructured":"Unrath N, McCabe E, Macori G, Fanning S (2021) Application of whole genome sequencing to aid in deciphering the persistence potential of Listeria monocytogenes in food production environments. Microorganisms 9:1\u201322. https:\/\/doi.org\/10.3390\/microorganisms9091856","journal-title":"Microorganisms"},{"key":"3680_CR15","first-page":"654","volume":"56","author":"G Casta\u00f1eda-Ruelas","year":"2014","unstructured":"Casta\u00f1eda-Ruelas G, Eslava-Campos C, Castro-del Campo N, Le\u00f3n-F\u00e9lix J, Chaidez-Quiroz C (2014) Listeriosis en M\u00e9xico: importancia cl\u00ednica y epidemiol\u00f3gica. Salud P\u00fab M\u00e9x 56:654\u2013659","journal-title":"Salud P\u00fab M\u00e9x"},{"key":"3680_CR16","unstructured":"Direcci\u00f3n General de Epidmeiolog\u00eda (DGE) (2022) Anuario de morbilidad 1984- 2022. https:\/\/epidemiologia.salud.gob.mx\/anuario\/2022\/morbilidad\/nacional\/distribucion_casos_nuevos_enfermedad_fuente_notificacion.pdf. Accessed 26 Febrary 2024"},{"key":"3680_CR17","doi-asserted-by":"publisher","first-page":"92","DOI":"10.5923\/j.microbiology.20130302.06","volume":"3","author":"GM Casta\u00f1eda-Ruelas","year":"2013","unstructured":"Casta\u00f1eda-Ruelas GM, Castro-del Campo N, Le\u00f3n F\u00e9lix J, Valdez JB, Guzm\u00e1n-Uriarte R, Luchansky JB, Porto-Fett ACS, Shoyer BA, Chaidez C (2013) Prevalence, levels, and relatedness of Listeria monocytogenes isolated from raw and ready-to-eat foods at retail markets in Culiac\u00e1n, Sinaloa, M\u00e9xico. J Microbiol Res 3:92\u201398. https:\/\/doi.org\/10.5923\/j.microbiology.20130302.06","journal-title":"J Microbiol Res"},{"key":"3680_CR18","first-page":"314","volume":"6","author":"LE Silva","year":"2007","unstructured":"Silva LE, P\u00e9rez C, Barreras A, Figueroa F (2007) Identification of Listeria spp. In frankfurters, products are exhibited for sale. J Anim Vet Adv 6:314\u2013316","journal-title":"J Anim Vet Adv"},{"key":"3680_CR19","doi-asserted-by":"publisher","first-page":"848","DOI":"10.22319\/rmcp.v11i3.5274","volume":"11","author":"M Jim\u00e9nez-Edeza","year":"2020","unstructured":"Jim\u00e9nez-Edeza M, Castillo-Burgos M, Germ\u00e1n-B\u00e1ez LJ, Casta\u00f1eda-Ruelas GM (2020) Venta a granel de embutidos: una tendencia de comercializaci\u00f3n asociada al riesgo de enfermedades trasmitidas por alimentos en Culiac\u00e1n, M\u00e9xico. Rev Mex Cie Pec 11:848\u2013858. https:\/\/doi.org\/10.22319\/rmcp.v11i3.5274","journal-title":"Rev Mex Cie Pec"},{"key":"3680_CR20","doi-asserted-by":"publisher","first-page":"177","DOI":"10.1006\/fmic.2000.0389","volume":"18","author":"C V\u00e1zquez-Salinas","year":"2001","unstructured":"V\u00e1zquez-Salinas C, Rodas-Su\u00e1rez O, Qui\u00f1onez-Ram\u00edrez EI (2001) Occurrence of Listeria species in raw milk in farms on the outskirt of Mexico City. Food Microbiol 18:177\u2013181. https:\/\/doi.org\/10.1006\/fmic.2000.0389","journal-title":"Food Microbiol"},{"key":"3680_CR21","doi-asserted-by":"publisher","first-page":"1","DOI":"10.15741\/revbio.06.nesp.e456","volume":"6","author":"GM Casta\u00f1eda-Ruelas","year":"2019","unstructured":"Casta\u00f1eda-Ruelas GM, Salazar-Jim\u00e9nez EP, Hern\u00e1ndez-Chi\u00f1as U, Eslava-Campos C, Chaidez-Quiroz C (2019) Adhesion capacity and invasion index of L. monocytogenes strains isolated from food and clinical cases in Mexico. Revista Bio Ciencias 6:1\u201312. https:\/\/doi.org\/10.15741\/revbio.06.nesp.e456","journal-title":"Revista Bio Ciencias"},{"key":"3680_CR22","doi-asserted-by":"publisher","first-page":"376","DOI":"10.21149\/9466","volume":"60","author":"GM Casta\u00f1eda-Ruelas","year":"2018","unstructured":"Casta\u00f1eda-Ruelas GM, Chaidez-Quiroz C, Salazar-Jim\u00e9nez EP, Hern\u00e1ndez-Chi\u00f1as U, Eslava-Campos CA (2018) Listeria monocytogenes y la listeriosis, problema de salud p\u00fablica en M\u00e9xico. Salud P\u00fab M\u00e9x 60:376\u2013377. https:\/\/doi.org\/10.21149\/9466","journal-title":"Salud P\u00fab M\u00e9x"},{"key":"3680_CR23","doi-asserted-by":"publisher","first-page":"2114","DOI":"10.1093\/bioinformatics\/btu170","volume":"30","author":"AM Bolger","year":"2014","unstructured":"Bolger AM, Lohse M, Usadel B (2014) Trimmomatic: a flexible trimmer for Illumina sequence data. Bioinformatics 30:2114\u20132120. https:\/\/doi.org\/10.1093\/bioinformatics\/btu170","journal-title":"Bioinformatics"},{"key":"3680_CR24","doi-asserted-by":"publisher","DOI":"10.1002\/cpbi.102","volume":"70","author":"A Prjibelski","year":"2020","unstructured":"Prjibelski A, Antipov D, Meleshko D, Lapidus A, Korobeynikov A (2020) Using SPAdes de novo assembler. Curr Protoc Bioinform 70:e102. https:\/\/doi.org\/10.1002\/cpbi.102","journal-title":"Curr Protoc Bioinform"},{"key":"3680_CR25","doi-asserted-by":"publisher","first-page":"giab008","DOI":"10.1093\/gigascience\/giab008","volume":"10","author":"P Danecek","year":"2021","unstructured":"Danecek P, Bonfield JK, Liddle J, Marshall J, Ohan V, Pollard MO, Whitwham TK, McCarthy SA, Davies RM, Li H (2021) Twelve years of SAMtools and BCFtools. Gigascience 10:giab008. https:\/\/doi.org\/10.1093\/gigascience\/giab008","journal-title":"Gigascience"},{"key":"3680_CR26","doi-asserted-by":"publisher","unstructured":"Li H (2013) Aligning sequence reads, clone sequences, and assembly contigs with BWA-MEM. arXiv 0:1\u20133. https:\/\/doi.org\/10.48550\/arXiv.1303.3997","DOI":"10.48550\/arXiv.1303.3997"},{"key":"3680_CR27","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1038\/srep08365","volume":"5","author":"T Brettin","year":"2015","unstructured":"Brettin T, Davis JJ, Disz T, Edwards RA, Gerdes S, Olsen GJ, Olson R, Oveerbeek R, Parrello B, Push GD, Shukla M, Thomason JA, Stevens R, Vonstein V, Wattam AR, Xia F (2015) RASTtk: a modular and extensible implementation of the RAST algorithm for building custom annotation pipelines and annotating batches of genomes. Sci Rep 5:1\u20136. https:\/\/doi.org\/10.1038\/srep08365","journal-title":"Sci Rep"},{"key":"3680_CR28","doi-asserted-by":"publisher","first-page":"2068","DOI":"10.1093\/bioinformatics\/btu153","volume":"30","author":"T Seemann","year":"2014","unstructured":"Seemann T (2014) Prokka:rapid prokaryotic genome annotation. Bioinforamtics 30:2068\u20132069. https:\/\/doi.org\/10.1093\/bioinformatics\/btu153","journal-title":"Bioinforamtics"},{"key":"3680_CR29","doi-asserted-by":"publisher","first-page":"119","DOI":"10.1093\/bioinformatics\/btw586","volume":"33","author":"A Gupta","year":"2017","unstructured":"Gupta A, Jordan IK, Rishishwar L (2017) stringMLST: a fast k-mer based tool for multilocus sequence typing. Bioinformatics 33:119\u2013121. https:\/\/doi.org\/10.1093\/bioinformatics\/btw586","journal-title":"Bioinformatics"},{"key":"3680_CR30","doi-asserted-by":"publisher","DOI":"10.1128\/JCM.01269-20","author":"AM Malberg-Tetzschner","year":"2020","unstructured":"Malberg-Tetzschner AM, Johnson JR, Johnston BD, Lund O, Scheutz F (2020) In silico genotyping of Escherichia coli isolates for extraintestinal virulence genes by use of whole-genome sequencing data. J Clin Microbiol. https:\/\/doi.org\/10.1128\/JCM.01269-20","journal-title":"J Clin Microbiol"},{"key":"3680_CR31","doi-asserted-by":"publisher","first-page":"12728","DOI":"10.1038\/s41598-021-91456-0","volume":"11","author":"M Feldgarden","year":"2021","unstructured":"Feldgarden M, Brover V, Gonzalez-Escalona N, Frye JG, Haendiges J, Haft DH, Hoffmann M, Pettengill JB, Prasad AB, Tillman GE, Tyson GH, Klimke W (2021) AMRFinderPlus and the reference gene catalog facilitate the examination of the genomic links among antimicrobial resistance, stress response, and virulence. Sci Rep 11:12728. https:\/\/doi.org\/10.1038\/s41598-021-91456-0","journal-title":"Sci Rep"},{"key":"3680_CR32","doi-asserted-by":"publisher","first-page":"3491","DOI":"10.1093\/jac\/dkaa345","volume":"75","author":"V Bortolaia","year":"2020","unstructured":"Bortolaia V, Kaas RS, Ruppe E, Roberts MC, Schwarz S, Cattoir V, Philippon A, Allesoe RL, Rebelo AR, Florensa AF, Fagelhauer L, Chakraborty T, Neumann B, Werner G, Bender JK, Stingl K, Nguyen M, Coppens J, Xavier BB, Malhotra-Kumar S, Westh H, Pinholt M, Anjum MF, Duggett NA, Kempf I, Nyk\u00e4senoja S, Olkkola S, Wieczorek K, Amaro A, Clemente L, Mossong J, Losch S, Ragimbeau C, Lund O, Aarestrup FM (2020) ResFinder 4.0 for predictions of phenotypes from genotypes. J Antimicrob Chemother 75:3491\u20133500. https:\/\/doi.org\/10.1093\/jac\/dkaa345","journal-title":"J Antimicrob Chemother"},{"key":"3680_CR33","doi-asserted-by":"publisher","first-page":"3895","DOI":"10.1128\/AAC.02412-14","volume":"58","author":"A Carattoli","year":"2014","unstructured":"Carattoli A, Zankari E, Garc\u00eda-Fern\u00e1ndez A, Larsen VM, Lund O, Villa L, M\u00f8ller F, Hasman H (2014) In silico detection and typing of plasmids using PlasmidFinder and plasmid multilocus sequence typing. Antimicrob Agents Chemother 58:3895\u20133903. https:\/\/doi.org\/10.1128\/AAC.02412-14","journal-title":"Antimicrob Agents Chemother"},{"key":"3680_CR34","doi-asserted-by":"publisher","first-page":"W16","DOI":"10.1093\/nar\/gkw387","volume":"8","author":"D Arndt","year":"2016","unstructured":"Arndt D, Grant JR, Marcu A, Sajed T, Pon A, Liang Y, Wishart DS (2016) PHASTER: a better, faster version of the PHAST phage search tool. Nucleic Acids Res 8:W16-21. https:\/\/doi.org\/10.1093\/nar\/gkw387","journal-title":"Nucleic Acids Res"},{"issue":"W1","key":"3680_CR35","doi-asserted-by":"publisher","first-page":"W30","DOI":"10.1093\/nar\/gkx343","volume":"45","author":"C Bertelli","year":"2017","unstructured":"Bertelli C, Laird MR, Williams KP, Lau BY, Hoad G, Winsor GL, Brinkman FS (2017) IslandViewer 4: expanded prediction of genomic islands for larger-scale datasets. Nucleic Acids Res 45(W1):W30\u2013W35. https:\/\/doi.org\/10.1093\/nar\/gkx343","journal-title":"Nucleic Acids Res"},{"issue":"1","key":"3680_CR36","doi-asserted-by":"publisher","first-page":"D206","DOI":"10.1093\/nar\/gkt1226","volume":"42","author":"R Overbeek","year":"2014","unstructured":"Overbeek R, Olson R, Pusch GD, Olsen GJ, Davis JJ, Disz T, Edwards RA, Gerdes S, Parrello B, Shukla M, Vonstein V, Wattam AR, Xia F, Stevens R (2014) The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST). Nucleic Acids Res 42(1):D206\u2013D214. https:\/\/doi.org\/10.1093\/nar\/gkt1226","journal-title":"Nucleic Acids Res"},{"issue":"6","key":"3680_CR37","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0011147","volume":"5","author":"AE Darling","year":"2010","unstructured":"Darling AE, Mau B, Perna NT (2010) Progressive mauve: multiple genome alignment with gene gain, loss, and rearrangement. PLoS ONE 5(6):e11147. https:\/\/doi.org\/10.1371\/journal.pone.0011147","journal-title":"PLoS ONE"},{"issue":"5","key":"3680_CR38","doi-asserted-by":"publisher","first-page":"1792","DOI":"10.1093\/nar\/gkh340","volume":"32","author":"RC Edgar","year":"2004","unstructured":"Edgar RC (2004) MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res 32(5):1792\u20131797. https:\/\/doi.org\/10.1093\/nar\/gkh340","journal-title":"Nucleic Acids Res"},{"issue":"4","key":"3680_CR39","doi-asserted-by":"publisher","first-page":"bbac258","DOI":"10.1093\/bib\/bbac258","volume":"23","author":"J Shang","year":"2022","unstructured":"Shang J, Tang X, Guo R, Sun Y (2022) Accurate identification of bacteriophages from metagenomic data using Transformer. Briefings Bioinformatics 23(4):bbac258. https:\/\/doi.org\/10.1093\/bib\/bbac258","journal-title":"Briefings Bioinformatics"},{"key":"3680_CR40","doi-asserted-by":"publisher","first-page":"20","DOI":"10.1186\/s42522-020-00026-3","volume":"2","author":"RE Timme","year":"2020","unstructured":"Timme RE, Wolfgang WJ, Balkey M, Venkata SLG, Randolph R, Allard M, Strain E (2020) Optimizing open data to support one health: best practices to ensure interoperability of genomic data from bacterial pathogens. One Health Outlook 2:20. https:\/\/doi.org\/10.1186\/s42522-020-00026-3","journal-title":"One Health Outlook"},{"key":"3680_CR41","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1038\/nmicrobiol.2016.185","volume":"2","author":"A Moura","year":"2016","unstructured":"Moura A, Criscuolo A, Pouseele H, Maury MM, Leclercq A, Tarr C, Bj\u00f6rkman JT, Dallman T, Reimer A, Enouf V, Larsonneur E, Carleton H, Bracq-Dieye H, Katz LS, Jones L, Touchon M, Tourdjma M, Walker M, Stroika S, Cantinelli T, Chenal-Fracisque V, Kucerova Z, Rocha EPC, Nadon C, Grant K, Nielsen EM, Pot B, Gerner-Smidt P, Lecuit M, Brisse S (2016) Whole genome-based population biology and epidemiological surveillance of Listeria monocytogenes. Nat Microbiol 2:1\u201310. https:\/\/doi.org\/10.1038\/nmicrobiol.2016.185","journal-title":"Nat Microbiol"},{"key":"3680_CR42","doi-asserted-by":"publisher","DOI":"10.1371\/journal.ppat.1000146","volume":"4","author":"M Ragon","year":"2008","unstructured":"Ragon M, Wirth T, Hollandt F, Lavenir R, Lecuit M, Le Monnier A, Brisse S (2008) A new perspective on Listeria monocytogenes evolution. PloS Pathog 4:e1000146. https:\/\/doi.org\/10.1371\/journal.ppat.1000146","journal-title":"PloS Pathog"},{"key":"3680_CR43","doi-asserted-by":"publisher","first-page":"596","DOI":"10.3389\/fmicb.2018.00596","volume":"9","author":"F Pasquali","year":"2018","unstructured":"Pasquali F, Palma F, Guillier L, Lucchi A, De Cesare A, Manfreda G (2018) Listeria monocytogenes sequence types 121 and 14 repeatedly isolated within one year of sampling in a rabbit meat processing plant: persistence and ecophysiology. Front Microbiol 9:596. https:\/\/doi.org\/10.3389\/fmicb.2018.00596","journal-title":"Front Microbiol"},{"key":"3680_CR44","doi-asserted-by":"publisher","first-page":"10320","DOI":"10.3390\/ijms221910320","volume":"22","author":"C Chmielowska","year":"2021","unstructured":"Chmielowska C, Korsak D, Chapkauskaitse E, Decewicz P, Lasek R, Szuplewska M, Bartosik D (2021) Plasmidome of Listeria spp.\u2014The repA-family business. Int J Mol Sci 22:10320. https:\/\/doi.org\/10.3390\/ijms221910320","journal-title":"Int J Mol Sci"},{"key":"3680_CR45","doi-asserted-by":"publisher","DOI":"10.3389\/fmicb.2021.653155","volume":"12","author":"S Schmitz-Esser","year":"2021","unstructured":"Schmitz-Esser S, Anast JM, Cortes BW (2021) A large-scale sequencing-based survey of plasmids in Listeria monocytogenes reveals global dissemination of plasmids. Front Microbiol 12:653155. https:\/\/doi.org\/10.3389\/fmicb.2021.653155","journal-title":"Front Microbiol"},{"key":"3680_CR46","doi-asserted-by":"publisher","first-page":"1","DOI":"10.3390\/toxins11070426","volume":"11","author":"P Hingston","year":"2019","unstructured":"Hingston P, Brenner T, Hansen LT, Wang S (2019) Comparative analysis of Listeria monocytogenes plasmids and expression levels of plasmid-encoded genes during growth under salt and acid stress conditions. Toxins 11:1\u201326. https:\/\/doi.org\/10.3390\/toxins11070426","journal-title":"Toxins"},{"key":"3680_CR47","doi-asserted-by":"publisher","first-page":"e00040","DOI":"10.1128\/genomeA.00040-15","volume":"3","author":"A Casey","year":"2015","unstructured":"Casey A, Jordan K, Coffey A, McAuliffe O (2015) Complete genome sequences of vB_LmoS_188 and vB_LmoS_293, two bacteriophages with specificity for Listeria monocytogenes strains of serotypes 4b and 4e. Genome Announc 3:e00040-e115. https:\/\/doi.org\/10.1128\/genomeA.00040-15","journal-title":"Genome Announc"},{"key":"3680_CR48","doi-asserted-by":"publisher","first-page":"3279","DOI":"10.1128\/aem.00546-11","volume":"77","author":"B Verghese","year":"2011","unstructured":"Verghese B, Lok M, Wen J, Alessandria V, Chen Y, Kathariou S, Knabe S (2011) comK prophage junction fragments as markers for Listeria monocytogenes genotypes unique to individual meat and poultry processing plants and a model for rapid niche-specific adaptation, biofilm formation, and persistence. App Environmen Microbiol 77:3279\u20133292. https:\/\/doi.org\/10.1128\/aem.00546-11","journal-title":"App Environmen Microbiol"},{"key":"3680_CR49","doi-asserted-by":"publisher","first-page":"6067","DOI":"10.1128\/AEM.01751-13","volume":"79","author":"V Dutta","year":"2013","unstructured":"Dutta V, Elhanafi D, Kathariou S (2013) Conservation and distribution of the benzalkonium chloride resistance cassette bcrABC in Listeria monocytogenes. Appl Environ Microbiol 79:6067\u20136074. https:\/\/doi.org\/10.1128\/AEM.01751-13","journal-title":"Appl Environ Microbiol"},{"key":"3680_CR50","doi-asserted-by":"publisher","first-page":"1","DOI":"10.3390\/genes10010011","volume":"10","author":"C Parsons","year":"2019","unstructured":"Parsons C, Lee S, Kathariou S (2019) Heavy metal resistance determinants of the foodborne pathogen Listeria monocytogenes. Genes 10:1\u201313. https:\/\/doi.org\/10.3390\/genes10010011","journal-title":"Genes"},{"key":"3680_CR51","doi-asserted-by":"publisher","first-page":"560","DOI":"10.1111\/mmi.14470","volume":"13","author":"C Parsons","year":"2020","unstructured":"Parsons C, Lee S, Kathariou S (2020) Dissemination and conservation of cadmium and arsenic resistance determinants in Listeria and other Gram-positive bacteria. Mol Microbiol 13:560\u2013569. https:\/\/doi.org\/10.1111\/mmi.14470","journal-title":"Mol Microbiol"}],"container-title":["Current Microbiology"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/link.springer.com\/content\/pdf\/10.1007\/s00284-024-03680-2.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/link.springer.com\/article\/10.1007\/s00284-024-03680-2\/fulltext.html","content-type":"text\/html","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/link.springer.com\/content\/pdf\/10.1007\/s00284-024-03680-2.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2024,5,15]],"date-time":"2024-05-15T02:03:18Z","timestamp":1715738598000},"score":1,"resource":{"primary":{"URL":"https:\/\/link.springer.com\/10.1007\/s00284-024-03680-2"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2024,4,17]]},"references-count":51,"journal-issue":{"issue":"6","published-print":{"date-parts":[[2024,6]]}},"alternative-id":["3680"],"URL":"https:\/\/doi.org\/10.1007\/s00284-024-03680-2","relation":{},"ISSN":["0343-8651","1432-0991"],"issn-type":[{"type":"print","value":"0343-8651"},{"type":"electronic","value":"1432-0991"}],"subject":[],"published":{"date-parts":[[2024,4,17]]},"assertion":[{"value":"22 September 2022","order":1,"name":"received","label":"Received","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"28 March 2024","order":2,"name":"accepted","label":"Accepted","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"17 April 2024","order":3,"name":"first_online","label":"First Online","group":{"name":"ArticleHistory","label":"Article History"}},{"order":1,"name":"Ethics","group":{"name":"EthicsHeading","label":"Declarations"}},{"value":"None of the authors have conflicts of interest, financial or otherwise, to declare.","order":2,"name":"Ethics","group":{"name":"EthicsHeading","label":"Conflict of interest"}},{"value":"Not applicable.","order":3,"name":"Ethics","group":{"name":"EthicsHeading","label":"Ethical Approval"}}],"article-number":"145"}}