{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,2,23]],"date-time":"2026-02-23T13:58:13Z","timestamp":1771855093269,"version":"3.50.1"},"reference-count":73,"publisher":"Springer Science and Business Media LLC","issue":"6","license":[{"start":{"date-parts":[[2025,4,17]],"date-time":"2025-04-17T00:00:00Z","timestamp":1744848000000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.springernature.com\/gp\/researchers\/text-and-data-mining"},{"start":{"date-parts":[[2025,4,17]],"date-time":"2025-04-17T00:00:00Z","timestamp":1744848000000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/www.springernature.com\/gp\/researchers\/text-and-data-mining"}],"funder":[{"name":"Royal Irrigation Department, Ministry of Agriculture and Cooperatives"},{"name":"Chulabhorn Royal Academy (Fundamental Fund: fiscal year 2022 by National Science Research and Innovation Fund","award":["grant number FRB650039\/0240 project number 165430"],"award-info":[{"award-number":["grant number FRB650039\/0240 project number 165430"]}]},{"name":"Chulabhorn Royal Academy (Fundamental Fund: fiscal year 2022 by National Science Research and Innovation Fund","award":["contract number FF-65\/008"],"award-info":[{"award-number":["contract number FF-65\/008"]}]}],"content-domain":{"domain":["link.springer.com"],"crossmark-restriction":false},"short-container-title":["Curr Microbiol"],"published-print":{"date-parts":[[2025,6]]},"DOI":"10.1007\/s00284-025-04229-7","type":"journal-article","created":{"date-parts":[[2025,4,17]],"date-time":"2025-04-17T11:14:56Z","timestamp":1744888496000},"update-policy":"https:\/\/doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":2,"title":["Assessment of Bacterial Community and Other Microorganism Along the Lam Takhong Watercourse, Nakhon Ratchasima, Thailand"],"prefix":"10.1007","volume":"82","author":[{"given":"Wanlada","family":"Klangnurak","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-4466-9246","authenticated-orcid":false,"given":"Woranich","family":"Hinthong","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Dusit","family":"Aue-umneoy","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Rungtawan","family":"Yomla","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"297","published-online":{"date-parts":[[2025,4,17]]},"reference":[{"issue":"2","key":"4229_CR1","doi-asserted-by":"publisher","first-page":"54","DOI":"10.1016\/S1470-8175(01)00017-0","volume":"29","author":"MF Chaplin","year":"2001","unstructured":"Chaplin MF (2001) Water: its importance to life. Biochem Mol Biol Educ 29(2):54\u201359. https:\/\/doi.org\/10.1016\/S1470-8175(01)00017-0","journal-title":"Biochem Mol Biol Educ"},{"key":"4229_CR2","doi-asserted-by":"publisher","first-page":"93","DOI":"10.1186\/s12302-022-00669-1","volume":"34","author":"W Feng","year":"2022","unstructured":"Feng W, Gao J, Wei Y, Liu D, Yang F, Zhang Q, Bai Y (2022) Pattern changes of microbial communities in urban river affected by anthropogenic activities and their environmental driving mechanisms. Environ Sci Eur 34:93. https:\/\/doi.org\/10.1186\/s12302-022-00669-1","journal-title":"Environ Sci Eur"},{"issue":"7","key":"4229_CR3","doi-asserted-by":"publisher","first-page":"670","DOI":"10.1631\/jzus.B1400003","volume":"15","author":"J Zhao","year":"2014","unstructured":"Zhao J, Zhao X, Chao L, Zhang W, You T, Zhang J (2014) Diversity change of microbial communities responding to zinc and arsenic pollution in a river of northeastern China. J Zhejiung Univ Sci B 15(7):670\u2013680. https:\/\/doi.org\/10.1631\/jzus.B1400003","journal-title":"J Zhejiung Univ Sci B"},{"issue":"11","key":"4229_CR4","doi-asserted-by":"publisher","first-page":"1631","DOI":"10.3390\/microorganisms8111631","volume":"8","author":"P Cruaud","year":"2020","unstructured":"Cruaud P, Vigneron A, Dorea CC, Rodriguez MJ, Charette SJ (2020) Rapid changes in microbial community structures along a meandering river. Microorganisms 8(11):1631. https:\/\/doi.org\/10.3390\/microorganisms8111631","journal-title":"Microorganisms"},{"key":"4229_CR5","doi-asserted-by":"publisher","first-page":"115671","DOI":"10.1016\/j.watres.2020.115671","volume":"178","author":"MB Nevers","year":"2020","unstructured":"Nevers MB, Byappanahalli MN, Nakatsu CH, Kinzelman JL, Phanikumar MS, Shively DA, Spoljaric AM (2020) Interaction of bacterial communities and indicators of water quality in shoreline sand, sediment, and water of Lake Michigan. Water Res 178:115671. https:\/\/doi.org\/10.1016\/j.watres.2020.115671","journal-title":"Water Res"},{"key":"4229_CR6","doi-asserted-by":"publisher","first-page":"6894","DOI":"10.1038\/s41598-022-09579-x","volume":"12","author":"Y Xie","year":"2022","unstructured":"Xie Y, Liu X, Wei H, Chen X, Gong N, Ahmad S, Lee T, Ismail S, Ni SQ (2022) Insight into impact of sewage discharge on microbial dynamics and pathogenicity in river ecosystem. Sci Rep 12:6894. https:\/\/doi.org\/10.1038\/s41598-022-09579-x","journal-title":"Sci Rep"},{"key":"4229_CR7","doi-asserted-by":"publisher","first-page":"578","DOI":"10.1038\/s41597-022-01686-8","volume":"9","author":"CO Santana","year":"2022","unstructured":"Santana CO, Spealman P, Azulai D, Reid M, Elias Dueker ME, Perron GG (2022) Bacteria communities and water quality parameters in riverine water and sediments near wastewater discharges. Sci Data 9:578. https:\/\/doi.org\/10.1038\/s41597-022-01686-8","journal-title":"Sci Data"},{"issue":"6","key":"4229_CR8","doi-asserted-by":"publisher","first-page":"2249","DOI":"10.3390\/su12062249","volume":"12","author":"X Wen","year":"2020","unstructured":"Wen X, Chen F, Lin Y, Zhu H, Yuan F, Kuang D, Jia Z, Yuan Z (2020) Microbial indicators and their use for monitoring drinking water quality\u2014a review. Sustainability 12(6):2249. https:\/\/doi.org\/10.3390\/su12062249","journal-title":"Sustainability"},{"key":"4229_CR9","doi-asserted-by":"publisher","first-page":"459","DOI":"10.1007\/s10661-006-7665-7","volume":"116","author":"R Devereux","year":"2006","unstructured":"Devereux R, Rublee P, Paul JH, Field KG, Domingo JWS (2006) Development and applications of microbial ecogenomic indicators for monitoring water quality: report of a workshop assessing the state of the science, research needs and future directions. Environ Monit Assess 116:459\u2013479. https:\/\/doi.org\/10.1007\/s10661-006-7665-7","journal-title":"Environ Monit Assess"},{"key":"4229_CR10","doi-asserted-by":"publisher","first-page":"19469","DOI":"10.1038\/s41598-019-56058-x","volume":"9","author":"L Paruch","year":"2019","unstructured":"Paruch L, Paruch AM, Eiken HG, S\u00f8rheim R (2019) Faecal pollution affects abundance and diversity of aquatic microbial community in anthropo-zoogenically influenced lotic ecosystems. Sci Rep 9:19469. https:\/\/doi.org\/10.1038\/s41598-019-56058-x","journal-title":"Sci Rep"},{"key":"4229_CR11","doi-asserted-by":"publisher","first-page":"105","DOI":"10.1016\/B978-012470100-7\/50008-X","volume-title":"Hanbook of water and wastewater microbiology","author":"NJ Horan","year":"2003","unstructured":"Horan NJ (2003) 7 - Feacal indicator organisms. In: Duncan Mara NH (ed) Hanbook of water and wastewater microbiology. Academic Press, Massachusetts, pp 105\u2013112"},{"key":"4229_CR12","doi-asserted-by":"publisher","first-page":"51","DOI":"10.1186\/s13568-014-0051-x","volume":"4","author":"PK Pandey","year":"2014","unstructured":"Pandey PK, Kass PH, Soupir ML, Biswas S, Singh VP (2014) Contamination of water resources by pathogenic bacteria. AMB Express 4:51","journal-title":"AMB Express"},{"key":"4229_CR13","doi-asserted-by":"publisher","first-page":"37","DOI":"10.1038\/nature02340","volume":"428","author":"GW Tyson","year":"2004","unstructured":"Tyson GW, Chapman J, Hugenholtz P, Allen EE, Ram RJ, Richardson PM, Solovyev VV, Rubin EM, Rokhsar DS, Banfield JF (2004) Community structure and metabolism through reconstruction of microbial genomes from the environment. Nature 428:37\u201343. https:\/\/doi.org\/10.1038\/nature02340","journal-title":"Nature"},{"key":"4229_CR14","doi-asserted-by":"publisher","first-page":"3","DOI":"10.1186\/2042-5783-2-3","volume":"2","author":"T Thomas","year":"2012","unstructured":"Thomas T, Gilbert J, Meyer F (2012) Metagenomics\u2014a guide from sampling to data analysis. Microb Inform Exp 2:3. https:\/\/doi.org\/10.1186\/2042-5783-2-3","journal-title":"Microb Inform Exp"},{"key":"4229_CR15","doi-asserted-by":"publisher","first-page":"9460","DOI":"10.1038\/s41598-023-36681-5","volume":"13","author":"Y Zhou","year":"2023","unstructured":"Zhou Y, Shi W, Wen Y, Mao E, Ni T (2023) Comparison of pathogen detection consistency between metagenomic next-generation sequencing and blood culture in patients with suspected bloodstream infection. Sci Rep 13:9460. https:\/\/doi.org\/10.1038\/s41598-023-36681-5","journal-title":"Sci Rep"},{"issue":"17","key":"4229_CR16","doi-asserted-by":"publisher","first-page":"6095","DOI":"10.1128\/AEM.01018-12","volume":"78","author":"V Gomez-Alvarez","year":"2012","unstructured":"Gomez-Alvarez V, Revetta RP, Domingo JWS (2012) Metagenomic analyses of drinking water receiving different disinfection treatments. Appl Environ Microbiol 78(17):6095\u20136102. https:\/\/doi.org\/10.1128\/AEM.01018-12","journal-title":"Appl Environ Microbiol"},{"key":"4229_CR17","doi-asserted-by":"publisher","first-page":"105612","DOI":"10.1016\/j.ocecoaman.2021.105612","volume":"208","author":"R Zhang","year":"2021","unstructured":"Zhang R, Liu W, Liu Y, Zhang H, Zhao Z, Zou L (2021) Impact of water quality variations on the microbial metagenome across coastal waters in Shenzhen, south China. Ocean Coast Manag 208:105612. https:\/\/doi.org\/10.1016\/j.ocecoaman.2021.105612","journal-title":"Ocean Coast Manag"},{"key":"4229_CR18","doi-asserted-by":"publisher","first-page":"e0257862","DOI":"10.1371\/journal.pone.0257862","volume":"16","author":"K Matsumoto","year":"2021","unstructured":"Matsumoto K, Sakami T, Watanabe T, Taniuchi Y, Kuwata A, Kakehi S, Engkong T, Igarashi Y, Kinoshita S, Asakawa S, Hattori M, Watabe S, Ishino Y, Kobayashi T, Gojobori T, Ikeo K (2021) Metagenomic analysis provides functional insights into seasonal change of a non-cyanobacterial prokaryotic community in temperate coastal waters. PLoS ONE 16:e0257862. https:\/\/doi.org\/10.1371\/journal.pone.0257862","journal-title":"PLoS ONE"},{"key":"4229_CR19","doi-asserted-by":"publisher","first-page":"1405","DOI":"10.3389\/fmicb.2015.01405","volume":"6","author":"TV Rossum","year":"2015","unstructured":"Rossum TV, Peabody MA, Uyaguari-Diaz MI, Cronin KI, Chan M, Slobodan JR, Nesbitt MJ, Suttle CA, Hsiao WW, Tang PKC, Prystajecky NA, Brinkman FSL (2015) Year-long metagenomic study of river microbiomes across land use and water quality. Front Microbiol 6:1405. https:\/\/doi.org\/10.3389\/fmicb.2015.01405","journal-title":"Front Microbiol"},{"key":"4229_CR20","doi-asserted-by":"publisher","first-page":"26","DOI":"10.1186\/s13765-022-00687-w","volume":"65","author":"SG Nguyen","year":"2022","unstructured":"Nguyen SG, Raza S, Ta LT, Le LT, Ho CT, Unno T (2022) Metagenomic investigation of the seasonal distribution of bacterial community and antibiotic-resistant genes in Day River Downstream, Ninh Binh, Vietnam. Appl Biol Chem 65:26. https:\/\/doi.org\/10.1186\/s13765-022-00687-w","journal-title":"Appl Biol Chem"},{"key":"4229_CR21","doi-asserted-by":"publisher","first-page":"5","DOI":"10.1186\/s40793-019-0345-3","volume":"14","author":"P Mittal","year":"2019","unstructured":"Mittal P, Prasoodanan PKV, Dhakan DB, Kumar S, Sharma VK (2019) Metagenome of a polluted river reveals a reservoir of metabolic and antibiotic resistance genes. Environ Microbiome 14:5. https:\/\/doi.org\/10.1186\/s40793-019-0345-3","journal-title":"Environ Microbiome"},{"issue":"3\u20134","key":"4229_CR22","doi-asserted-by":"publisher","first-page":"441","DOI":"10.1016\/j.vetmic.2014.02.017","volume":"171","author":"GC Amos","year":"2014","unstructured":"Amos GC, Zhang L, Hawkey PM, Gaze WH, Wellington EM (2014) Functional metagenomic analysis reveals rivers are a reservoir for diverse antibiotic resistance genes. Vet Microbiol 171(3\u20134):441\u2013447. https:\/\/doi.org\/10.1016\/j.vetmic.2014.02.017","journal-title":"Vet Microbiol"},{"key":"4229_CR23","volume-title":"Thai Gazetteer book 2","author":"Academy of Moral and Political Sciences","year":"2016","unstructured":"Academy of Moral and Political Sciences (2016) Thai Gazetteer book 2, 4th edn. Royal Society of Thailand, Bangkok","edition":"4"},{"key":"4229_CR24","first-page":"282","volume-title":"Manual of methods for sampling and analyzing plankton","author":"L Wongrat","year":"2003","unstructured":"Wongrat L, Boonyaphiwat S (2003) Manual of methods for sampling and analyzing plankton. Kasetsart University Press, Bangkok, p 282"},{"key":"4229_CR25","first-page":"8","volume":"25","author":"L Wongrat","year":"2017","unstructured":"Wongrat L, Pipatcharoenchai W (2017) Zooplankton of Kanchanaburi Province, Thailand. J Fish Environ 25:8\u201329","journal-title":"J Fish Environ"},{"issue":"5","key":"4229_CR26","first-page":"595","volume":"26","author":"C Ariyadej","year":"2004","unstructured":"Ariyadej C, Tansakul R, Tansakul P, Angsupanich S (2004) Phytoplankton diversity and its relationships to the physico-chemical environment in the Banglang Reservoir. Yala Province Songklanakarn J Sci Technol 26(5):595\u2013607","journal-title":"Yala Province Songklanakarn J Sci Technol"},{"issue":"4","key":"4229_CR27","doi-asserted-by":"publisher","first-page":"5939","DOI":"10.15666\/aeer\/1804_59395951","volume":"18","author":"R Prasertphon","year":"2020","unstructured":"Prasertphon R, Jitchum P, Chaichana R (2020) Water chemistry, phytoplankton diversity and severe eutrophication with detection of microcystin contents in Thai tropical urban ponds. Appl Ecol Environ Res 18(4):5939\u20135951. https:\/\/doi.org\/10.15666\/aeer\/1804_59395951","journal-title":"Appl Ecol Environ Res"},{"issue":"1","key":"4229_CR28","first-page":"184","volume":"8","author":"T Prasertsin","year":"2018","unstructured":"Prasertsin T, Yavichai S, Pingmano C (2018) Diversity of phytoplankton and water quality in Mae Suai reservoir during the rainy season. Prog Appl Sci Tech 8(1):184\u2013199","journal-title":"Prog Appl Sci Tech"},{"issue":"5","key":"4229_CR29","first-page":"704","volume":"48","author":"P Jitchum","year":"2014","unstructured":"Jitchum P (2014) Biodiversity of Plankton communities in Inland waters along the Tenasserim range, Southern Thailand. Agric Nat Resour 48(5):704\u2013718","journal-title":"Agric Nat Resour"},{"key":"4229_CR30","unstructured":"Barber HG, Haworth EY (1981) A guide to the morphology of the diatom frustule. Freshwater Biological Association, Cumbria."},{"key":"4229_CR31","unstructured":"Desikachary TV (1959) Cyanophyta. Indian Council of Agricultural Research, New Delhi"},{"key":"4229_CR32","volume-title":"Fresh-water biology","author":"WT Edmondson","year":"1959","unstructured":"Edmondson WT (1959) Fresh-water biology, 2nd edn. John-Wiley & Sons Inc, Seattle","edition":"2"},{"key":"4229_CR33","first-page":"702","volume-title":"The fresh water algae flora of the British Isles: an identfication guide to freshwater and terrestrial algae","author":"MG Kelly","year":"2002","unstructured":"Kelly MG, Haworth EY (2002) Phylum Bacillariophyta. In: John DM, Whitton B, Brook A (eds) The fresh water algae flora of the British Isles: an identfication guide to freshwater and terrestrial algae. Cambridge University Press, Cambridge, p 702"},{"key":"4229_CR34","volume-title":"Freshwater red algae of the world","author":"S Kumano","year":"2002","unstructured":"Kumano S (2002) Freshwater red algae of the world. Biopress Limited, Bristol"},{"key":"4229_CR35","volume-title":"Fresh-water invertebrates of the United States","author":"RW Pennak","year":"1978","unstructured":"Pennak RW (1978) Fresh-water invertebrates of the United States. Wiley, New York"},{"key":"4229_CR36","volume-title":"Phytoplankton","author":"L Wongrat","year":"1999","unstructured":"Wongrat L (1999) Phytoplankton, 1st edn. Kasetsart University Press, Bangkok","edition":"1"},{"key":"4229_CR37","volume-title":"Zooplankton","author":"L Wongrat","year":"2000","unstructured":"Wongrat L (2000) Zooplankton, 1st edn. Kasetsart University Press, Bangkok","edition":"1"},{"key":"4229_CR38","volume-title":"Freshwater algae in Thailand","author":"Y Peerapormpisal","year":"2015","unstructured":"Peerapormpisal Y (2015) Freshwater algae in Thailand. Department of Biology, Faculty of Science, Chiang Mai University, Chiang Mai"},{"key":"4229_CR39","first-page":"1","volume":"105","author":"RAM Brandt","year":"1974","unstructured":"Brandt RAM (1974) The non-marine aquatic mollusca of Thailand. Archiv f\u00fcr Molluskenkunde 105:1\u2013423","journal-title":"Archiv f\u00fcr Molluskenkunde"},{"key":"4229_CR40","unstructured":"Sangpradub N, Boonsoong B (2006) Identification of freshwater invertebrates of the Mekong River and its tributaries. Mekong River Commission, Lao."},{"key":"4229_CR41","volume-title":"Aquatic insect of California","author":"L Usinger","year":"1963","unstructured":"Usinger L (1963) Aquatic insect of California. University of California Press, California"},{"issue":"1","key":"4229_CR42","doi-asserted-by":"publisher","first-page":"10","DOI":"10.14806\/ej.17.1.200","volume":"17","author":"M Martin","year":"2011","unstructured":"Martin M (2011) Cutadapt removes adapter sequences from high-throughput sequencing reads. EMBnetjournal 17(1):10\u201312. https:\/\/doi.org\/10.14806\/ej.17.1.200","journal-title":"EMBnetjournal"},{"issue":"10","key":"4229_CR43","doi-asserted-by":"publisher","first-page":"1674","DOI":"10.1093\/bioinformatics\/btv033","volume":"31","author":"D Li","year":"2015","unstructured":"Li D, Liu C, Luo R, Sadakane K, Lam T (2015) MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph. Bioinformatics 31(10):1674\u20131676. https:\/\/doi.org\/10.1093\/bioinformatics\/btv033","journal-title":"Bioinformatics"},{"key":"4229_CR44","doi-asserted-by":"publisher","first-page":"119","DOI":"10.1186\/1471-2105-11-119","volume":"11","author":"D Hyatt","year":"2010","unstructured":"Hyatt D, Chen G, LoCascio PF, Land ML, Larimer FW, Hauser LJ (2010) Prodigal: prokaryotic gene recognition and translation initiation site identification. BMC Bioinform 11:119. https:\/\/doi.org\/10.1186\/1471-2105-11-119","journal-title":"BMC Bioinform"},{"key":"4229_CR45","doi-asserted-by":"publisher","first-page":"1026","DOI":"10.1038\/nbt.3988","volume":"35","author":"M Steinegger","year":"2017","unstructured":"Steinegger M, Soding J (2017) MMseqs2 enables sensitive protein sequence searching for the analysis of massive data sets. Nat Biotechnol 35:1026\u20131028. https:\/\/doi.org\/10.1038\/nbt.3988","journal-title":"Nat Biotechnol"},{"issue":"5","key":"4229_CR46","doi-asserted-by":"publisher","first-page":"713","DOI":"10.1093\/bioinformatics\/btn025","volume":"24","author":"R Li","year":"2008","unstructured":"Li R, Li Y, Kristiansen K, Wang J (2008) SOAP: short oligonucleotide alignment program. Bioinformatics 24(5):713\u2013714. https:\/\/doi.org\/10.1093\/bioinformatics\/btn025","journal-title":"Bioinformatics"},{"key":"4229_CR47","doi-asserted-by":"publisher","first-page":"421","DOI":"10.1186\/1471-2105-10-421","volume":"10","author":"C Camacho","year":"2009","unstructured":"Camacho C, Coulouris G, Avagyan V, Ma N, Papadopoulos J, Bealer K, Madden TL (2009) BLAST+: architecture and applications. BMC Bioinform 10:421. https:\/\/doi.org\/10.1186\/1471-2105-10-421","journal-title":"BMC Bioinform"},{"key":"4229_CR48","doi-asserted-by":"publisher","first-page":"59","DOI":"10.1038\/nmeth.3176","volume":"12","author":"B Buchfink","year":"2015","unstructured":"Buchfink B, Xie C, Huson D (2015) Fast and sensitive protein alignment using DIAMOND. Nat Methods 12:59\u201360. https:\/\/doi.org\/10.1038\/nmeth.3176","journal-title":"Nat Methods"},{"key":"4229_CR49","doi-asserted-by":"publisher","first-page":"385","DOI":"10.1186\/1471-2105-12-385","volume":"12","author":"BD Ondov","year":"2011","unstructured":"Ondov BD, Bergman NH, Phillippy AM (2011) Krona: interactive metagenomic visualization in a Web browser. BMC Bioinform 12:385. https:\/\/doi.org\/10.1186\/1471-2105-12-385","journal-title":"BMC Bioinform"},{"key":"4229_CR50","first-page":"110","volume-title":"Pollution of aquatic ecosystems I","author":"FM Wilhelm","year":"2009","unstructured":"Wilhelm FM (2009) Pollution of aquatic ecosystems I. Academic Press, Massachusetts, pp 110\u2013119"},{"issue":"2","key":"4229_CR51","doi-asserted-by":"publisher","first-page":"1","DOI":"10.35762\/AER.2020.42.2.1","volume":"42","author":"NT Giao","year":"2020","unstructured":"Giao NT, Nhien HTH (2020) Phytoplankton-water quality relationship in water bodies in the Mekong Delta, Vietnam. Appl Envi Res 42(2):1\u201312. https:\/\/doi.org\/10.35762\/AER.2020.42.2.1","journal-title":"Appl Envi Res"},{"issue":"10","key":"4229_CR52","doi-asserted-by":"publisher","first-page":"e00140","DOI":"10.1128\/AEM.00140-20","volume":"86","author":"R Props","year":"2020","unstructured":"Props R, Denef VJ (2020) Temperature and nutrient levels correspond with lineage-specific microdiversification in the ubiquitous and abundant freshwater genus Limnohabitans. Appl Environ Microbiol 86(10):e00140-e220. https:\/\/doi.org\/10.1128\/AEM.00140-20","journal-title":"Appl Environ Microbiol"},{"issue":"1","key":"4229_CR53","doi-asserted-by":"publisher","first-page":"555","DOI":"10.1099\/ijsem.0.003787","volume":"70","author":"GM Choi","year":"2020","unstructured":"Choi GM, Lee SY, Kim SY, Wee JH, Im WT (2020) Hydrogenophaga borbori sp. Nov., isolated from activated sludge. Int J Syst Evol Microbiol 70(1):555\u2013561. https:\/\/doi.org\/10.1099\/ijsem.0.003787","journal-title":"Int J Syst Evol Microbiol"},{"issue":"5","key":"4229_CR54","doi-asserted-by":"publisher","first-page":"10201027","DOI":"10.1016\/j.biortech.2006.04.035","volume":"98","author":"C Kasemsap","year":"2007","unstructured":"Kasemsap C, Wantawin C (2007) Batch production of polyhydroxyalkanoate by low-polyphosphate-content activated sludge at varying pH. Bioresour Technol 98(5):10201027. https:\/\/doi.org\/10.1016\/j.biortech.2006.04.035","journal-title":"Bioresour Technol"},{"issue":"4","key":"4229_CR55","first-page":"901","volume":"39","author":"FM Hassan","year":"2020","unstructured":"Hassan FM, Al-Yaseen BM, Abbas A (2020) Use of epipelic algae as a bioindicator to determine water quality of al-diwanyia river, Diwanyia (Iraq). Pollut Res 39(4):901\u2013910","journal-title":"Pollut Res"},{"issue":"3","key":"4229_CR56","first-page":"221","volume":"20","author":"RT Martins","year":"2008","unstructured":"Martins RT, Stephan NNC, Alves RG (2008) Tubificidae (Annelida: Oligochaeta) as an indicator of water quality in an urban stream in southeast Brazil. Acta Limnol Bras 20(3):221\u2013226","journal-title":"Acta Limnol Bras"},{"issue":"2","key":"4229_CR57","doi-asserted-by":"publisher","first-page":"25","DOI":"10.47836\/pjst.28.S2.03","volume":"28","author":"ND Hettige","year":"2020","unstructured":"Hettige ND, Hashim RB, Kutty ABA, Jamil NRB, Ash\u2019aari ZHB (2020) Application of ecological indices using macroinvertebrate assemblages in relation to aquaculture activities in Rawang Sub-basin, Selangor River, Malaysia. Pertanika J Sci Technol 28(2):25\u201345. https:\/\/doi.org\/10.47836\/pjst.28.S2.03","journal-title":"Pertanika J Sci Technol"},{"key":"4229_CR58","doi-asserted-by":"publisher","first-page":"615","DOI":"10.1016\/B978-0-08-047378-9.50018-X","volume-title":"Plant pathology","author":"GN Agrios","year":"2005","unstructured":"Agrios GN (2005) Plant diseases caused by prokaryotes: bacteria and mollicutes. Plant pathology, 5th edn. Elsevier, Amsterdam, pp 615\u2013703","edition":"5"},{"issue":"4","key":"4229_CR59","doi-asserted-by":"publisher","first-page":"5670","DOI":"10.2903\/j.efsa.2019.5670","volume":"17","author":"C Bragard","year":"2019","unstructured":"Bragard C, Dehnen-Schmutz K, Di Serio F, Gonthier P, Miret JAJ, Justesen AF, MacLeod A, Magnusson CS, Milonas P, Navas-Cortes JA, Parnell S, Potting R, Reignault PL, Thulke HH, Van der Werf W, Civera AV, Yuen J, Zappala L, Van der Wolf J, Kaluski T, Pautasso M, Jacques MA (2019) Pest categorisation of Clavibacter sepedonicus. EFSA J 17(4):5670. https:\/\/doi.org\/10.2903\/j.efsa.2019.5670","journal-title":"EFSA J"},{"issue":"22","key":"4229_CR60","doi-asserted-by":"publisher","first-page":"6948","DOI":"10.1128\/AEM.02495-13","volume":"79","author":"MA Tancos","year":"2013","unstructured":"Tancos MA, Chalupowicz L, Barash I, Manulis-Sasson S, Smart CD (2013) Tomato fruit and seed colonization by Clavibacter michiganensis subsp. michiganensis through external and internal route. Appl Environ Microbiol 79(22):6948\u20136957. https:\/\/doi.org\/10.1128\/AEM.02495-13","journal-title":"Appl Environ Microbiol"},{"key":"4229_CR61","doi-asserted-by":"publisher","first-page":"1531","DOI":"10.3389\/fmicb.2015.01531","volume":"6","author":"RA White","year":"2016","unstructured":"White RA, Chan AM, Gavelis GS, Leander BS, Brady AL, Slater GF, Lim DSS, Suttle CA (2016) Metagenomic analysis suggests modern freshwater microbialites harbor a distinct core microbial community. Front Microbiol 6:1531. https:\/\/doi.org\/10.3389\/fmicb.2015.01531","journal-title":"Front Microbiol"},{"key":"4229_CR62","volume-title":"Medical microbiology","author":"P Jurtshuk","year":"1996","unstructured":"Jurtshuk P (1996) Bacterial metabolism. In: Baron S (ed) Medical microbiology, 4th edn. University of Texas Medical Branch at Galveston, Texas","edition":"4"},{"key":"4229_CR63","doi-asserted-by":"publisher","first-page":"781542","DOI":"10.3389\/fspas.2022.781542","volume":"9","author":"P Schwendner","year":"2022","unstructured":"Schwendner P, Riedo A, Melton DJ, Horvath P, Lindner R, Ehrenfreund P, Beblo-Vranesevic K, Rettberg P, Rabbow E, Westall F, Bashir A, Moissl-Eichinger C, Garcia-Descalzo L, Gomez F, Amils R, Marteinsson VP, Walter N, Cockell CS (2022) Microbial metabolism of amino acids\u2014biologically induced removal of glycine and the resulting fingerprint as a potential biosignature. Front Astron Space Sci 9:781542. https:\/\/doi.org\/10.3389\/fspas.2022.781542","journal-title":"Front Astron Space Sci"},{"issue":"3","key":"4229_CR64","doi-asserted-by":"publisher","first-page":"1076","DOI":"10.1002\/lno.10755","volume":"63","author":"N Loick-Wilde","year":"2018","unstructured":"Loick-Wilde N, Weber SC, Eglite E, Liskow I, Schulz-Bull D, Wasmund N, Wodarg D, Montoya JP (2018) De novo amino acid synthesis and turnover during N2 fixation. Limnol Oceanogr 63(3):1076\u20131092. https:\/\/doi.org\/10.1002\/lno.10755","journal-title":"Limnol Oceanogr"},{"key":"4229_CR65","doi-asserted-by":"publisher","first-page":"e107429","DOI":"10.1371\/journal.pone.0107429","volume":"9","author":"JS Gruber","year":"2014","unstructured":"Gruber JS, Ercumen A, Colford JM (2014) Coliform bacteria as indicators of diarrheal risk in household drinking water: systematic review and meta-analysis. PLoS ONE 9:e107429. https:\/\/doi.org\/10.1371\/journal.pone.0107429","journal-title":"PLoS ONE"},{"key":"4229_CR66","volume-title":"Medical microbiology","author":"RA Giannella","year":"1996","unstructured":"Giannella RA (1996) Medical microbiology, 4th edn. University of Texas Medical Branch at Galveston, Texas","edition":"4"},{"key":"4229_CR67","unstructured":"9th Heatlh Section (2023) Report of selected notifiable diseases in the 9th health section, week 15. The Office of Disease Prevention and Control. http:\/\/odpc9.ddc.moph.go.th\/hot\/66-situation-47.pdf. Accessed 10 Oct 2024"},{"key":"4229_CR68","doi-asserted-by":"publisher","first-page":"35","DOI":"10.1016\/bs.ampbs.2022.01.002","volume":"80","author":"LR Green","year":"2022","unstructured":"Green LR, Cole J, Parga EFD, Shaw JG (2022) Neisseria gonorrhoeae physiology and pathogenesis. Adv Microb Physiol 80:35\u201383. https:\/\/doi.org\/10.1016\/bs.ampbs.2022.01.002","journal-title":"Adv Microb Physiol"},{"issue":"Suppl 2","key":"4229_CR69","doi-asserted-by":"publisher","first-page":"B51","DOI":"10.1016\/j.vaccine.2009.04.063","volume":"27","author":"LH Harrison","year":"2009","unstructured":"Harrison LH, Trotter CL, Ramsay ME (2009) Global epidemiology of meningococcal disease. Vaccine 27(Suppl 2):B51\u2013B63. https:\/\/doi.org\/10.1016\/j.vaccine.2009.04.063","journal-title":"Vaccine"},{"issue":"1","key":"4229_CR70","doi-asserted-by":"publisher","first-page":"193","DOI":"10.1093\/emph\/eov018","volume":"2015","author":"AR Burmeister","year":"2015","unstructured":"Burmeister AR (2015) Horizontal gene transfer. Evol Med Public Health 2015(1):193\u2013194. https:\/\/doi.org\/10.1093\/emph\/eov018","journal-title":"Evol Med Public Health"},{"issue":"3","key":"4229_CR71","doi-asserted-by":"publisher","first-page":"417","DOI":"10.1128\/MMBR.00016-10","volume":"74","author":"J Davies","year":"2010","unstructured":"Davies J, Davies D (2010) Origins and evolution of antibiotic resistance. Microbiol Mol Biol Rev 74(3):417\u2013433. https:\/\/doi.org\/10.1128\/MMBR.00016-10","journal-title":"Microbiol Mol Biol Rev"},{"key":"4229_CR72","doi-asserted-by":"publisher","first-page":"257","DOI":"10.1038\/s41579-021-00649-x","volume":"20","author":"DGJ Larsson","year":"2022","unstructured":"Larsson DGJ, Flach C (2022) Antibiotic resistance in the environment. Nat Rev Microbiol 20:257\u2013269. https:\/\/doi.org\/10.1038\/s41579-021-00649-x","journal-title":"Nat Rev Microbiol"},{"key":"4229_CR73","doi-asserted-by":"publisher","first-page":"e00724","DOI":"10.1128\/AEM.00724-20","volume":"86","author":"P Hong","year":"2020","unstructured":"Hong P, Mantilla-Calderon D, Wanga C (2020) Metagenomics as a tool to monitor reclaimed-water quality. Appl Environ Microbiol 86:e00724-e820. https:\/\/doi.org\/10.1128\/AEM.00724-20","journal-title":"Appl Environ Microbiol"}],"container-title":["Current Microbiology"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/link.springer.com\/content\/pdf\/10.1007\/s00284-025-04229-7.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/link.springer.com\/article\/10.1007\/s00284-025-04229-7\/fulltext.html","content-type":"text\/html","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/link.springer.com\/content\/pdf\/10.1007\/s00284-025-04229-7.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2025,5,17]],"date-time":"2025-05-17T11:19:01Z","timestamp":1747480741000},"score":1,"resource":{"primary":{"URL":"https:\/\/link.springer.com\/10.1007\/s00284-025-04229-7"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2025,4,17]]},"references-count":73,"journal-issue":{"issue":"6","published-print":{"date-parts":[[2025,6]]}},"alternative-id":["4229"],"URL":"https:\/\/doi.org\/10.1007\/s00284-025-04229-7","relation":{},"ISSN":["0343-8651","1432-0991"],"issn-type":[{"value":"0343-8651","type":"print"},{"value":"1432-0991","type":"electronic"}],"subject":[],"published":{"date-parts":[[2025,4,17]]},"assertion":[{"value":"23 October 2024","order":1,"name":"received","label":"Received","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"3 April 2025","order":2,"name":"accepted","label":"Accepted","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"17 April 2025","order":3,"name":"first_online","label":"First Online","group":{"name":"ArticleHistory","label":"Article History"}},{"order":1,"name":"Ethics","group":{"name":"EthicsHeading","label":"Declarations"}},{"value":"The authors declare that there is no conflict of interest.","order":2,"name":"Ethics","group":{"name":"EthicsHeading","label":"Conflict of interest"}},{"value":"The study of plankton and benthos was approved by the Institutional Animal Care and Use Committee (approval number ACUC-KMITL-RES\/2023\/021).","order":3,"name":"Ethics","group":{"name":"EthicsHeading","label":"Ethical Approval"}},{"value":"Not applicable.","order":4,"name":"Ethics","group":{"name":"EthicsHeading","label":"Consent to Participate"}},{"value":"All authors agree to publish.","order":5,"name":"Ethics","group":{"name":"EthicsHeading","label":"Consent for Publication"}}],"article-number":"248"}}