{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,9,28]],"date-time":"2026-09-28T21:56:48Z","timestamp":1790632608462,"version":"4.1.0"},"reference-count":66,"publisher":"Springer Science and Business Media LLC","issue":"10","license":[{"start":{"date-parts":[[2026,9,1]],"date-time":"2026-09-01T00:00:00Z","timestamp":1788220800000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.springernature.com\/gp\/researchers\/text-and-data-mining"},{"start":{"date-parts":[[2026,9,1]],"date-time":"2026-09-01T00:00:00Z","timestamp":1788220800000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/www.springernature.com\/gp\/researchers\/text-and-data-mining"}],"funder":[{"DOI":"10.13039\/501100001503","name":"Indian Council of Agricultural Research","doi-asserted-by":"publisher","award":["Consortium Research Platform Project on Molecular Breeding (tomato)"],"award-info":[{"award-number":["Consortium Research Platform Project on Molecular Breeding (tomato)"]}],"id":[{"id":"10.13039\/501100001503","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100001503","name":"Indian Council of Agricultural Research","doi-asserted-by":"publisher","award":["CRSCIARISIL20210030315"],"award-info":[{"award-number":["CRSCIARISIL20210030315"]}],"id":[{"id":"10.13039\/501100001503","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":["link.springer.com"],"crossmark-restriction":false},"short-container-title":["Curr Microbiol"],"published-print":{"date-parts":[[2026,10]]},"DOI":"10.1007\/s00284-026-05132-5","type":"journal-article","created":{"date-parts":[[2026,9,1]],"date-time":"2026-09-01T16:37:39Z","timestamp":1788280659000},"update-policy":"https:\/\/doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":0,"title":["Leaf Curl Disease Resistance Landscaping in Homozygous Ty-Gene Donor Tomato Genotypes Using a Robust Disease Scoring System and Indexing of Begomoviruses Under Natural Epiphytotic Conditions"],"prefix":"10.1007","volume":"83","author":[{"ORCID":"https:\/\/orcid.org\/0009-0006-6048-5427","authenticated-orcid":false,"given":"Firoz","family":"Mondal","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Shipra","family":"Saxena","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Zakir","family":"Hussain","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0009-0008-0096-9301","authenticated-orcid":false,"given":"Mehulee","family":"Sarkar","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Bikash","family":"Mandal","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Kajal Kumar","family":"Biswas","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Satish Kumar","family":"Yadav","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-5497-0190","authenticated-orcid":false,"given":"Anirban","family":"Roy","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"297","published-online":{"date-parts":[[2026,9,1]]},"reference":[{"key":"5132_CR1","unstructured":"Saikia AK, Muniyappa V (1989) Epidemiology and control of tomato leaf curl virus in southern India. Trop Agric 66:350-354."},{"key":"5132_CR2","doi-asserted-by":"publisher","first-page":"327","DOI":"10.1080\/07352689209382350","volume":"11","author":"SG Lazarowitz","year":"1992","unstructured":"Lazarowitz SG, Shepherd RJ (1992) Geminiviruses: Genome structure and gene function. Crit Rev Plant Sci 11:327\u2013349. https:\/\/doi.org\/10.1080\/07352689209382350","journal-title":"Crit Rev Plant Sci"},{"key":"5132_CR3","doi-asserted-by":"publisher","first-page":"369","DOI":"10.1146\/annurev.phyto.37.1.369","volume":"37","author":"BD Harrison","year":"1999","unstructured":"Harrison BD, Robinson DJ, NATURAL GENOMIC AND ANTIGENIC VARIATION IN WHITEFLY-TRANSMITTED GEMINIVIRUSES (BEGOMOVIRUSES) (1999) Annu Rev Phytopathol 37:369\u2013398. https:\/\/doi.org\/10.1146\/annurev.phyto.37.1.369","journal-title":"Annu Rev Phytopathol"},{"key":"5132_CR4","doi-asserted-by":"publisher","first-page":"1791","DOI":"10.1007\/s00705-008-0181-z","volume":"153","author":"S Das","year":"2008","unstructured":"Das S, Ghosh R, Paul S et al (2008) Complete nucleotide sequence of a monopartite begomovirus associated with yellow vein mosaic disease of mesta from north India. Arch Virol 153:1791\u20131796. https:\/\/doi.org\/10.1007\/s00705-008-0181-z","journal-title":"Arch Virol"},{"key":"5132_CR5","doi-asserted-by":"publisher","first-page":"588","DOI":"10.1007\/s11033-025-10702-0","volume":"52","author":"F Mondal","year":"2025","unstructured":"Mondal F, Saxena S, Hussain Z et al (2025) A novel interspecific-recombinant monopartite begomovirus emerging in tomato (Solanum lycopersicum L.) genotypes with Ty-resistant genes. Mol Biol Rep 52:588. https:\/\/doi.org\/10.1007\/s11033-025-10702-0","journal-title":"Mol Biol Rep"},{"key":"5132_CR6","doi-asserted-by":"publisher","first-page":"53","DOI":"10.1007\/978-981-97-8408-0_2","volume-title":"Taxonomy and Classification of Plant Viruses and Viroids","author":"MN Maruthi","year":"2026","unstructured":"Maruthi MN, Roy A, Malathi VG (2026) Taxonomy of Family: Geminiviridae. In: Sastry KS et al.(eds) Taxonomy and Classification of Plant Viruses and Viroids. Springer, Singapore, pp 53\u2013115 https:\/\/doi.org\/10.1007\/978-981-97-8408-0_2"},{"key":"5132_CR7","doi-asserted-by":"publisher","first-page":"87","DOI":"10.1007\/s11262-014-1141-1","volume":"50","author":"S Shilpi","year":"2015","unstructured":"Shilpi S, Kumar A, Biswas S et al (2015) A recombinant Tobacco curly shoot virus causes leaf curl disease in tomato in a north-eastern state of India and has potentiality to trans-replicate a non-cognate betasatellite. Virus Genes 50:87\u201396. https:\/\/doi.org\/10.1007\/s11262-014-1141-1","journal-title":"Virus Genes"},{"key":"5132_CR8","doi-asserted-by":"publisher","unstructured":"Malathi VG, Renukadevi P, Chakraborty S et al. (2017). Begomoviruses and Their Satellites Occurring in India: Distribution, Diversity and Pathogenesis. In: Mandal, B., Rao, G., Baranwal, V., Jain, R. (eds) A Century of Plant Virology in India. Springer, Singapore, pp 75-177. https:\/\/doi.org\/10.1007\/978-981-10-5672-7_5","DOI":"10.1007\/978-981-10-5672-7_5"},{"key":"5132_CR9","doi-asserted-by":"publisher","first-page":"74","DOI":"10.1007\/s13337-012-0115-y","volume":"24","author":"A Roy","year":"2013","unstructured":"Roy A, Spoorthi P, Panwar G et al (2013) Molecular Evidence for Occurrence of Tomato leaf curl New Delhi virus in Ash Gourd (Benincasa hispida) Germplasm Showing a Severe Yellow Stunt Disease in India. Indian J Virol 24:74\u201377. https:\/\/doi.org\/10.1007\/s13337-012-0115-y","journal-title":"Indian J Virol"},{"key":"5132_CR10","doi-asserted-by":"publisher","first-page":"298","DOI":"10.1007\/s13337-021-00651-0","volume":"32","author":"M Sarkar","year":"2021","unstructured":"Sarkar M, Aggarwal S, Mukherjee SK et al (2021) Sub-cellular localization of suppressor proteins of tomato leaf curl New Delhi virus. VirusDisease 32:298\u2013304. https:\/\/doi.org\/10.1007\/s13337-021-00651-0","journal-title":"VirusDisease"},{"key":"5132_CR11","doi-asserted-by":"publisher","unstructured":"Sarkar M, Gupta D, Sinha P et al (2025) Comparative Suppressor Activity of AV2, AC2 and AC4 Genes of Tomato Leaf Curl New Delhi Virus Using Image Analysis. J Plant Growth Regul 44:4468\u20134476. https:\/\/doi.org\/10.1007\/s00344-025-11698-4","DOI":"10.1007\/s00344-025-11698-4"},{"key":"5132_CR12","doi-asserted-by":"publisher","first-page":"1481523","DOI":"10.3389\/fmicb.2024.1481523","volume":"15","author":"M Sarkar","year":"2024","unstructured":"Sarkar M, Gupta D, Singh OW et al (2024) Identification of pathogenicity determinants in ToLCNDV and their RNAi-based knockdown for disease management in Nicotiana benthamiana and tomato plants. Front Microbiol 15:1481523. https:\/\/doi.org\/10.3389\/fmicb.2024.1481523","journal-title":"Front Microbiol"},{"key":"5132_CR13","doi-asserted-by":"publisher","first-page":"469","DOI":"10.1080\/13102818.2016.1148634","volume":"30","author":"M Ramzan","year":"2016","unstructured":"Ramzan M, Tabassum, Bushra, Nasir, Idrees A et al (2016) Identification and application of biocontrol agents against Cotton leaf curl virus disease in Gossypium hirsutum under greenhouse conditions. Biotechnol Biotechnol Equip 30:469\u2013478. https:\/\/doi.org\/10.1080\/13102818.2016.1148634","journal-title":"Biotechnol Biotechnol Equip"},{"key":"5132_CR14","doi-asserted-by":"publisher","first-page":"e0223765","DOI":"10.1371\/journal.pone.0223765","volume":"14","author":"A Roy","year":"2019","unstructured":"Roy A, Zhai Y, Ortiz J et al (2019) Multiplexed editing of a begomovirus genome restricts escape mutant formation and disease development. PLoS ONE 14:e0223765. https:\/\/doi.org\/10.1371\/journal.pone.0223765","journal-title":"PLoS ONE"},{"key":"5132_CR15","doi-asserted-by":"publisher","first-page":"433","DOI":"10.1007\/s41348-021-00549-5","volume":"129","author":"OW Singh","year":"2022","unstructured":"Singh OW, Gupta D, Joshi B et al (2022) Spray application of a cocktail of dsRNAs reduces infection of chilli leaf curl virus in Nicotiana benthamiana. J Plant Dis Prot 129:433\u2013438. https:\/\/doi.org\/10.1007\/s41348-021-00549-5","journal-title":"J Plant Dis Prot"},{"key":"5132_CR16","doi-asserted-by":"publisher","first-page":"e2101833118","DOI":"10.1073\/pnas.2101833118","volume":"118","author":"N Sharma","year":"2021","unstructured":"Sharma N, Sahu PP, Prasad A et al (2021) The Sw5a gene confers resistance to ToLCNDV and triggers an HR response after direct AC4 effector recognition. Proc Natl Acad Sci 118:e2101833118. https:\/\/doi.org\/10.1073\/pnas.2101833118","journal-title":"Proc Natl Acad Sci"},{"key":"5132_CR17","doi-asserted-by":"publisher","first-page":"1069","DOI":"10.32604\/biocell.2021.014354","volume":"45","author":"T Welegama","year":"2021","unstructured":"Welegama T, Rafii MY, Ahmad K et al (2021) Development of high yield and tomato yellow leaf curl virus (TYLCV) resistance using conventional and molecular approaches: A review. Biocell 45:1069","journal-title":"Biocell"},{"key":"5132_CR18","doi-asserted-by":"publisher","first-page":"141","DOI":"10.1007\/BF00225889","volume":"88","author":"D Zamir","year":"1994","unstructured":"Zamir D, Ekstein-Michelson I, Zakay Y et al (1994) Mapping and introgression of a tomato yellow leaf curl virus tolerance gene, TY-1. Theor Appl Genet 88:141\u2013146. https:\/\/doi.org\/10.1007\/BF00225889","journal-title":"Theor Appl Genet"},{"key":"5132_CR19","doi-asserted-by":"publisher","first-page":"271","DOI":"10.1007\/s11032-007-9089-7","volume":"20","author":"Y Ji","year":"2007","unstructured":"Ji Y, Schuster DJ, Scott JW (2007) Ty-3, a begomovirus resistance locus near the Tomato yellow leaf curl virus resistance locus Ty-1 on chromosome 6 of tomato. Mol Breed 20:271\u2013284. https:\/\/doi.org\/10.1007\/s11032-007-9089-7","journal-title":"Mol Breed"},{"key":"5132_CR20","doi-asserted-by":"publisher","first-page":"281","DOI":"10.21273\/jashs.134.2.281","volume":"134","author":"Y Ji","year":"2009","unstructured":"Ji Y, Scott JW, Schuster DJ, Maxwell DP (2009) Molecular Mapping of Ty-4, a New Tomato Yellow Leaf Curl Virus Resistance Locus on Chromosome 3 of Tomato. J Am Soc Hortic Sci 134:281\u2013288. https:\/\/doi.org\/10.21273\/jashs.134.2.281","journal-title":"J Am Soc Hortic Sci"},{"key":"5132_CR21","unstructured":"Hutton SF, Scott JW (2013) Fine-mapping and cloning of Ty-1 and Ty-3; and mapping of a new TYLCV resistance locus,Ty-6. Tomato Breed Round Table"},{"key":"5132_CR22","unstructured":"Hanson P, Green SK, Kuo G (2006) Ty-02, a gene on chromosome 11 conditioning geminivirus resistance in tomato. University of Florida"},{"key":"5132_CR23","doi-asserted-by":"publisher","first-page":"519","DOI":"10.1007\/s00122-009-1060-z","volume":"119","author":"I Anbinder","year":"2009","unstructured":"Anbinder I, Reuveni M, Azari R et al (2009) Molecular dissection of Tomato leaf curl virus resistance in tomato line TY172 derived from Solanum peruvianum. Theor Appl Genet 119:519\u2013530. https:\/\/doi.org\/10.1007\/s00122-009-1060-z","journal-title":"Theor Appl Genet"},{"key":"5132_CR24","doi-asserted-by":"publisher","first-page":"e1003399","DOI":"10.1371\/journal.pgen.1003399","volume":"9","author":"MG Verlaan","year":"2013","unstructured":"Verlaan MG, Hutton SF, Ibrahem RM et al (2013) The Tomato Yellow Leaf Curl Virus Resistance Genes Ty-1 and Ty-3 Are Allelic and Code for DFDGD-Class RNA\u2013Dependent RNA Polymerases. PLOS Genet 9:e1003399. https:\/\/doi.org\/10.1371\/journal.pgen.1003399","journal-title":"PLOS Genet"},{"key":"5132_CR25","doi-asserted-by":"publisher","first-page":"12942","DOI":"10.1073\/pnas.1400894111","volume":"111","author":"P Butterbach","year":"2014","unstructured":"Butterbach P, Verlaan MG, Dullemans A et al (2014) Tomato yellow leaf curl virus resistance by Ty-1 involves increased cytosine methylation of viral genomes and is compromised by cucumber mosaic virus infection. Proc Natl Acad Sci 111:12942\u201312947. https:\/\/doi.org\/10.1073\/pnas.1400894111","journal-title":"Proc Natl Acad Sci"},{"key":"5132_CR26","doi-asserted-by":"publisher","first-page":"256","DOI":"10.1186\/s12985-024-02508-6","volume":"21","author":"X Ma","year":"2024","unstructured":"Ma X, Zhou Y, Wu L, Moffett P (2024) Resistance gene Ty-1 restricts TYLCV infection in tomato by increasing RNA silencing. Virol J 21:256. https:\/\/doi.org\/10.1186\/s12985-024-02508-6","journal-title":"Virol J"},{"key":"5132_CR27","doi-asserted-by":"publisher","unstructured":"Shen X, Yan Z, Wang X et al (2020) The NLR Protein Encoded by the Resistance Gene Ty-2 Is Triggered by the Replication-Associated Protein Rep\/C1 of Tomato Yellow Leaf Curl Virus. Front Plant Sci 11. https:\/\/doi.org\/10.3389\/fpls.2020.545306","DOI":"10.3389\/fpls.2020.545306"},{"key":"5132_CR28","doi-asserted-by":"publisher","first-page":"e1005538","DOI":"10.1371\/journal.pgen.1005538","volume":"11","author":"M Lapidot","year":"2015","unstructured":"Lapidot M, Karniel U, Gelbart D et al (2015) A Novel Route Controlling Begomovirus Resistance by the Messenger RNA Surveillance Factor Pelota. PLOS Genet 11:e1005538. https:\/\/doi.org\/10.1371\/journal.pgen.1005538","journal-title":"PLOS Genet"},{"key":"5132_CR29","doi-asserted-by":"publisher","first-page":"36","DOI":"10.1007\/s11103-026-01700-2","volume":"116","author":"A Majumdar","year":"2026","unstructured":"Majumdar A, Babu YM, Mondal F et al (2026) The prospects of targeting messenger RNA surveillance factor PELOTA for developing virus resistance in plants. Plant Mol Biol 116:36. https:\/\/doi.org\/10.1007\/s11103-026-01700-2","journal-title":"Plant Mol Biol"},{"key":"5132_CR30","doi-asserted-by":"publisher","first-page":"22","DOI":"10.1007\/s00122-024-04803-w","volume":"138","author":"X Shen","year":"2025","unstructured":"Shen X, Gill U, Arens M et al (2025) The tomato gene Ty-6, encoding DNA polymerase delta subunit 1, confers broad resistance to Geminiviruses. Theor Appl Genet 138:22. https:\/\/doi.org\/10.1007\/s00122-024-04803-w","journal-title":"Theor Appl Genet"},{"key":"5132_CR31","doi-asserted-by":"publisher","DOI":"10.1007\/s10327-026-01283-2","author":"K Matsuoka","year":"2026","unstructured":"Matsuoka K, Kido S, Kimura K et al (2026) Ty-1 confers resistance to geminivirus tomato curly top virus. J Gen Plant Pathol. https:\/\/doi.org\/10.1007\/s10327-026-01283-2","journal-title":"J Gen Plant Pathol"},{"key":"5132_CR32","doi-asserted-by":"publisher","first-page":"67","DOI":"10.1007\/s10681-026-03711-y","volume":"222","author":"M Shimoide","year":"2026","unstructured":"Shimoide M, Nakajima M, Pohan NS et al (2026) Integration of Ty-1\/Ty-3 and Ty-6 confers improved and durable resistance to highly pathogenic begomoviruses in tomato. Euphytica 222:67. https:\/\/doi.org\/10.1007\/s10681-026-03711-y","journal-title":"Euphytica"},{"key":"5132_CR33","doi-asserted-by":"publisher","first-page":"1213","DOI":"10.1186\/s12870-025-07344-6","volume":"25","author":"AMA Mahmoud","year":"2025","unstructured":"Mahmoud AMA, Hassan AA, Abdel-Ati KEA et al (2025) ExploringTy resistance genes and genetic diversity in improved tomato lines selected from commercial hybrids. BMC Plant Biol 25:1213. https:\/\/doi.org\/10.1186\/s12870-025-07344-6","journal-title":"BMC Plant Biol"},{"key":"5132_CR34","doi-asserted-by":"publisher","first-page":"1198","DOI":"10.3389\/fpls.2018.01198","volume":"9","author":"Z Yan","year":"2018","unstructured":"Yan Z, P\u00e9rez-de-Castro A, D\u00edez MJ et al (2018) Resistance to Tomato Yellow Leaf Curl Virus in Tomato Germplasm. Front Plant Sci 9:1198. https:\/\/doi.org\/10.3389\/fpls.2018.01198","journal-title":"Front Plant Sci"},{"key":"5132_CR35","doi-asserted-by":"publisher","first-page":"1192","DOI":"10.3390\/agriculture14071192","volume":"14","author":"J\u00c1 Cabrera","year":"2024","unstructured":"Cabrera J\u00c1, Carbonell P, Salinas JF et al (2024) Effect of Introgression of Ty-1 and ty-5 Genes on Productivity, Quality, and Antioxidant Compounds in De la Pera Tomato Breeding Lines. Agriculture 14:1192. https:\/\/doi.org\/10.3390\/agriculture14071192","journal-title":"Agriculture"},{"key":"5132_CR36","doi-asserted-by":"publisher","first-page":"928","DOI":"10.1094\/Phyto-84-928","volume":"84","author":"I Michelson","year":"1994","unstructured":"Michelson I (1994) Accumulation and Translocation of Tomato Yellow Leaf Curl Virus (TYLCV) in a Lycopersicon esculentum Breeding Line Containing the L. chilense TYLCV Tolerance Gene Ty-1. Phytopathology 84:928. https:\/\/doi.org\/10.1094\/Phyto-84-928","journal-title":"Phytopathology"},{"key":"5132_CR37","doi-asserted-by":"publisher","first-page":"407","DOI":"10.1007\/s10681-015-1357-8","volume":"204","author":"HC Prasanna","year":"2015","unstructured":"Prasanna HC, Kashyap SP, Krishna R et al (2015) Marker assisted selection of Ty-2 and Ty-3 carrying tomato lines and their implications in breeding tomato leaf curl disease resistant hybrids. Euphytica 204:407\u2013418. https:\/\/doi.org\/10.1007\/s10681-015-1357-8","journal-title":"Euphytica"},{"key":"5132_CR38","doi-asserted-by":"publisher","unstructured":"Lata S, Hussain Z, Mangal M et al (2019) qPCR analysis of Ty-2 and Ty-3 gene pyramided lines of tomato for resistance to tomato leaf curl New Delhi virus (ToLCNDV). Indian J Agric Sci 89. https:\/\/doi.org\/10.56093\/ijas.v89i10.94636","DOI":"10.56093\/ijas.v89i10.94636"},{"key":"5132_CR39","doi-asserted-by":"publisher","first-page":"462","DOI":"10.1007\/s13562-020-00633-1","volume":"30","author":"P Prabhandakavi","year":"2020","unstructured":"Prabhandakavi P, Pogiri R, Kumar R et al (2020) Pyramiding Ty-1\/Ty-3, Ty-2, ty-5 and ty-6 genes into tomato hybrid to develop resistance against tomato leaf curl viruses and recurrent parent genome recovery by ddRAD sequencing method. J Plant Biochem Biotechnol 30:462\u2013476. https:\/\/doi.org\/10.1007\/s13562-020-00633-1","journal-title":"J Plant Biochem Biotechnol"},{"key":"5132_CR40","doi-asserted-by":"publisher","first-page":"557","DOI":"10.1007\/s10658-023-02784-y","volume":"168","author":"A Kaushal","year":"2024","unstructured":"Kaushal A, Sadashiva AT, Ravishankar KV et al (2024) Marker-assisted pyramiding of Ty-2, Ty-3, Ph-2, and Ph-3 genes for combined resistance to tomato leaf curl and late blight diseases in tomato (Solanum lycopersicum L). Eur J Plant Pathol 168:557\u2013570. https:\/\/doi.org\/10.1007\/s10658-023-02784-y","journal-title":"Eur J Plant Pathol"},{"key":"5132_CR41","doi-asserted-by":"publisher","unstructured":"Mondal F, Saxena S, Sarkar M et al (2026) Molecular characterization of a naturally occurring isolate of Begomovirus solanumkarnatakaense causing breakdown of Ty-3-mediated resistance in tomato plants with increased disease severity under elevated temperature. BMC Plant Biol 26, 1194. https:\/\/doi.org\/10.1186\/s12870-026-08978-w","DOI":"10.1186\/s12870-026-08978-w"},{"key":"5132_CR42","doi-asserted-by":"publisher","first-page":"183","DOI":"10.1007\/s10681-013-0896-0","volume":"193","author":"O Juli\u00e1n","year":"2013","unstructured":"Juli\u00e1n O, Herr\u00e1iz J, Corella S et al (2013) Initial development of a set of introgression lines from Solanum peruvianum PI 126944 into tomato: exploitation of resistance to viruses. Euphytica 193:183\u2013196. https:\/\/doi.org\/10.1007\/s10681-013-0896-0","journal-title":"Euphytica"},{"key":"5132_CR43","unstructured":"Orchard CJ (2022) Pre-breeding to Combine Genes for Resistance and Agronomic Traits in Processing and Fresh-Market Tomato. The Ohio State University"},{"key":"5132_CR44","doi-asserted-by":"publisher","first-page":"964","DOI":"10.56093\/ijas.v89i6.90770","volume":"89","author":"Z Hussain","year":"2019","unstructured":"Hussain Z, Lata S, Mangal M et al (2019) Validation of molecular markers for multiple disease resistance in tomato (Solanum lycopersicum). Indian J Agric Sci 89:964\u2013968","journal-title":"Indian J Agric Sci"},{"key":"5132_CR45","doi-asserted-by":"publisher","first-page":"45","DOI":"10.1007\/s40011-020-01197-9","volume":"91","author":"P Prabhandakavi","year":"2021","unstructured":"Prabhandakavi P, Kumar R, Acharya S et al (2021) Evaluation of Tomato Inbred Lines Harboring Ty Gene(s) for Resistance Against Monopartite and Bipartite Begomoviruses. Proc Natl Acad Sci India Sect B Biol Sci 91:45\u201352. https:\/\/doi.org\/10.1007\/s40011-020-01197-9","journal-title":"Proc Natl Acad Sci India Sect B Biol Sci"},{"key":"5132_CR46","unstructured":"Doyle JJ, Doyle JL (1987) A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochem Bull"},{"key":"5132_CR47","doi-asserted-by":"publisher","first-page":"1547","DOI":"10.1093\/molbev\/msy096","volume":"35","author":"S Kumar","year":"2018","unstructured":"Kumar S, Stecher G, Li M et al (2018) MEGA X: molecular evolutionary genetics analysis across computing platforms. Mol Biol Evol 35:1547. https:\/\/doi.org\/10.1093\/molbev\/msy096","journal-title":"Mol Biol Evol"},{"key":"5132_CR48","doi-asserted-by":"publisher","first-page":"5457","DOI":"10.1007\/s00253-012-4685-9","volume":"97","author":"P Jyothsna","year":"2013","unstructured":"Jyothsna P, Haq QMI, Singh P et al (2013) Infection of tomato leaf curl New Delhi virus (ToLCNDV), a bipartite begomovirus with betasatellites, results in enhanced level of helper virus components and antagonistic interaction between DNA B and betasatellites. Appl Microbiol Biotechnol 97:5457\u20135471. https:\/\/doi.org\/10.1007\/s00253-012-4685-9","journal-title":"Appl Microbiol Biotechnol"},{"key":"5132_CR49","doi-asserted-by":"publisher","first-page":"92","DOI":"10.1016\/j.cropro.2014.03.021","volume":"61","author":"MK Bag","year":"2014","unstructured":"Bag MK, Gautam NK, Prasad TV et al (2014) Evaluation of an Indian collection of black gram germplasm and identification of resistance sources to Mungbean yellow mosaic virus. Crop Prot 61:92\u2013101. https:\/\/doi.org\/10.1016\/j.cropro.2014.03.021","journal-title":"Crop Prot"},{"key":"5132_CR50","doi-asserted-by":"publisher","first-page":"1197","DOI":"10.1007\/s12298-019-00700-5","volume":"25","author":"A Kumar","year":"2019","unstructured":"Kumar A, Jindal SK, Dhaliwal MS et al (2019) Gene pyramiding for elite tomato genotypes against ToLCV (Begomovirus spp.), late blight (Phytophthora infestans) and RKN (Meloidogyne spp.) for northern India farmers. Physiol Mol Biol Plants 25:1197\u20131209. https:\/\/doi.org\/10.1007\/s12298-019-00700-5","journal-title":"Physiol Mol Biol Plants"},{"key":"5132_CR51","doi-asserted-by":"publisher","first-page":"259","DOI":"10.1023\/A:1018353806051","volume":"101","author":"B Pic\u00f3","year":"1998","unstructured":"Pic\u00f3 B, D\u00edez MJ, Nuez F (1998) Evaluation of whitefly-mediated inoculation techniques to screen Lycopersicon esculentum and wild relatives for resistance to Tomato yellow leaf curl virus. Euphytica 101:259\u2013271. https:\/\/doi.org\/10.1023\/A:1018353806051","journal-title":"Euphytica"},{"key":"5132_CR52","doi-asserted-by":"publisher","first-page":"9","DOI":"10.3390\/plants10010009","volume":"10","author":"JH Lee","year":"2021","unstructured":"Lee JH, Chung DJ, Lee JM, Yeam I (2021) Development and Application of Gene-Specific Markers for Tomato Yellow Leaf Curl Virus Resistance in Both Field and Artificial Infections. Plants 10:9. https:\/\/doi.org\/10.3390\/plants10010009","journal-title":"Plants"},{"key":"5132_CR53","doi-asserted-by":"publisher","first-page":"59","DOI":"10.1016\/j.cropro.2012.10.007","volume":"44","author":"M Camara","year":"2013","unstructured":"Camara M, Mbaye AA, Noba K et al (2013) Field screening of tomato genotypes for resistance to Tomato yellow leaf curl virus (TYLCV) disease in Senegal. Crop Prot 44:59\u201365. https:\/\/doi.org\/10.1016\/j.cropro.2012.10.007","journal-title":"Crop Prot"},{"key":"5132_CR54","unstructured":"AZIZI A, Mozafari J, Shamsbakhsh M (2008) Phenotypic and molecular screening of tomato germplasm for resistance to Tomato yellow leaf curl virus. Iran. J. Biotechnol 6:199-206"},{"key":"5132_CR55","unstructured":"Rajasri M, Vijayalakshmi K (2013) Screening of Tomato Genotypes Against Tomato leaf curlvirus. Indian J Crop Prot 41:91-94"},{"key":"5132_CR56","doi-asserted-by":"publisher","first-page":"137","DOI":"10.37855\/jah.2008.v10i02.29","volume":"10","author":"A Reddy","year":"2008","unstructured":"Reddy A, Patil MS, Dharmatti PR, Rajasekaram T (2008) Screening for genetic divergence in tomato genotypes against tomato leaf curl virus. J Appl Hortic 10:137\u2013141. https:\/\/doi.org\/10.37855\/jah.2008.v10i02.29","journal-title":"J Appl Hortic"},{"key":"5132_CR57","first-page":"755","volume":"80","author":"RK Singh","year":"2010","unstructured":"Singh RK, Rai N, Singh SN (2010) Response of tomato genotypes to tomato leaf curl virus. Indian J Agric Sci 80:755\u2013758","journal-title":"Indian J Agric Sci"},{"key":"5132_CR58","doi-asserted-by":"publisher","first-page":"171","DOI":"10.1007\/978-981-10-5984-1_10","volume-title":"Begomoviruses: Occurrence and Management in Asia and Africa","author":"S Tripathi","year":"2017","unstructured":"Tripathi S, Verma R (2017) Begomoviruses in India. In: Saxena S, Tiwari AK (eds) Begomoviruses: Occurrence and Management in Asia and Africa. Springer Singapore, Singapore, pp 171\u2013186 https:\/\/doi.org\/10.1007\/978-981-10-5984-1_10"},{"key":"5132_CR59","doi-asserted-by":"publisher","first-page":"1332","DOI":"10.1038\/s41598-018-37971-z","volume":"9","author":"E Fiallo-Oliv\u00e9","year":"2019","unstructured":"Fiallo-Oliv\u00e9 E, Trenado HP, Louro D, Navas-Castillo J (2019) Recurrent speciation of a tomato yellow leaf curl geminivirus in Portugal by recombination. Sci Rep 9:1332. https:\/\/doi.org\/10.1038\/s41598-018-37971-z","journal-title":"Sci Rep"},{"key":"5132_CR60","doi-asserted-by":"publisher","first-page":"302","DOI":"10.1016\/j.virol.2006.09.030","volume":"359","author":"S Garc\u00eda-Andr\u00e9s","year":"2007","unstructured":"Garc\u00eda-Andr\u00e9s S, Accotto GP, Navas-Castillo J, Moriones E (2007) Founder effect, plant host, and recombination shape the emergent population of begomoviruses that cause the tomato yellow leaf curl disease in the Mediterranean basin. Virology 359:302\u2013312 https:\/\/doi.org\/10.1016\/j.virol.2006.09.030","journal-title":"Virology"},{"key":"5132_CR61","doi-asserted-by":"publisher","first-page":"333","DOI":"10.1007\/s10327-024-01202-3","volume":"90","author":"NS Pohan","year":"2024","unstructured":"Pohan NS, Okuno K, Okabe S et al (2024) Pepper yellow leaf curl Aceh virus: a recombinant replacing the parental begomovirus is highly virulent and breaks Ty-1-mediated resistance in tomato. J Gen Plant Pathol 90:333\u2013343. https:\/\/doi.org\/10.1007\/s10327-024-01202-3","journal-title":"J Gen Plant Pathol"},{"key":"5132_CR62","doi-asserted-by":"publisher","unstructured":"Nakajima M, Shimoide M, Pohan NS et al (2026) Evolutionary Changes in Tomato Yellow Leaf Curl Virus Associated with Widespread Ty-1 use in Japan. Phytopathology\u00ae https:\/\/doi.org\/10.1094\/PHYTO-03-26-0062-R","DOI":"10.1094\/PHYTO-03-26-0062-R"},{"key":"5132_CR63","doi-asserted-by":"publisher","first-page":"121","DOI":"10.1007\/978-981-95-2852-3_8","volume-title":"Tomato Leaf Curl New Delhi Virus (ToLCNDV): Insights into Virome Dynamics and Management","author":"B Roy","year":"2026","unstructured":"Roy B, Verma N, Majumdar A et al (2026) Advancements in Diagnostic Tools for Rapid and Sensitive Detection of Tomato Leaf Curl New Delhi Virus in Diverse Crops. In: Kumar R, Tiwari RK, Lal MK, Roy A (eds) Tomato Leaf Curl New Delhi Virus (ToLCNDV): Insights into Virome Dynamics and Management. Springer Nature, Singapore, pp 121\u2013140 https:\/\/doi.org\/10.1007\/978-981-95-2852-3_8"},{"key":"5132_CR64","doi-asserted-by":"publisher","first-page":"140","DOI":"10.1016\/j.virusres.2008.11.021","volume":"141","author":"F Fabre","year":"2009","unstructured":"Fabre F, Bruchou C, Palloix A, Moury B (2009) Key determinants of resistance durability to plant viruses: Insights from a model linking within-and between-host dynamics. Virus Res 141:140\u2013149 https:\/\/doi.org\/10.1016\/j.virusres.2008.11.021","journal-title":"Virus Res"},{"key":"5132_CR65","doi-asserted-by":"publisher","first-page":"113","DOI":"10.1016\/j.virusres.2008.07.028","volume":"141","author":"RA Jones","year":"2009","unstructured":"Jones RA (2009) Plant virus emergence and evolution: origins, new encounter scenarios, factors driving emergence, effects of changing world conditions, and prospects for control. Virus Res 141:113\u2013130. https:\/\/doi.org\/10.1016\/j.virusres.2008.07.028","journal-title":"Virus Res"},{"key":"5132_CR66","doi-asserted-by":"publisher","first-page":"297","DOI":"10.1016\/S0065-3527(06)67008-5","volume":"67","author":"SE Seal","year":"2006","unstructured":"Seal SE, Jeger MJ, Van den Bosch F (2006) Begomovirus evolution and disease management. Adv Virus Res 67:297\u2013316. https:\/\/doi.org\/10.1016\/S0065-3527(06)67008-5","journal-title":"Adv Virus Res"}],"container-title":["Current Microbiology"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/link.springer.com\/content\/pdf\/10.1007\/s00284-026-05132-5.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/link.springer.com\/article\/10.1007\/s00284-026-05132-5","content-type":"text\/html","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/link.springer.com\/content\/pdf\/10.1007\/s00284-026-05132-5.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2026,9,28]],"date-time":"2026-09-28T21:01:57Z","timestamp":1790629317000},"score":1,"resource":{"primary":{"URL":"https:\/\/link.springer.com\/10.1007\/s00284-026-05132-5"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2026,9,1]]},"references-count":66,"journal-issue":{"issue":"10","published-print":{"date-parts":[[2026,10]]}},"alternative-id":["5132"],"URL":"https:\/\/doi.org\/10.1007\/s00284-026-05132-5","relation":{},"ISSN":["0343-8651","1432-0991"],"issn-type":[{"value":"0343-8651","type":"print"},{"value":"1432-0991","type":"electronic"}],"subject":[],"published":{"date-parts":[[2026,9,1]]},"assertion":[{"value":"1 November 2025","order":1,"name":"received","label":"Received","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"17 August 2026","order":2,"name":"accepted","label":"Accepted","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"1 September 2026","order":3,"name":"first_online","label":"First Online","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"The authors declare no competing interests.","order":1,"name":"Ethics","label":"Competing Interests","group":{"name":"EthicsHeading","label":"Declarations"}}],"article-number":"551"}}