{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,10,12]],"date-time":"2026-10-12T20:46:10Z","timestamp":1791837970531,"version":"4.3.4"},"reference-count":209,"publisher":"Springer Science and Business Media LLC","issue":"10","license":[{"start":{"date-parts":[[2026,9,29]],"date-time":"2026-09-29T00:00:00Z","timestamp":1790640000000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.springernature.com\/gp\/researchers\/text-and-data-mining"},{"start":{"date-parts":[[2026,9,29]],"date-time":"2026-09-29T00:00:00Z","timestamp":1790640000000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/www.springernature.com\/gp\/researchers\/text-and-data-mining"}],"content-domain":{"domain":["link.springer.com"],"crossmark-restriction":false},"short-container-title":["Plant Cell Rep"],"published-print":{"date-parts":[[2026,10]]},"DOI":"10.1007\/s00299-026-03989-1","type":"journal-article","created":{"date-parts":[[2026,9,29]],"date-time":"2026-09-29T09:09:30Z","timestamp":1790672970000},"update-policy":"https:\/\/doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":0,"title":["Integrative genomics resolves rice loci associated with acidic soil-related aluminum, cadmium, and manganese stress responses"],"prefix":"10.1007","volume":"45","author":[{"given":"Sandeep","family":"Jaiswal","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Anita","family":"Kumari","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Binay K.","family":"Singh","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Kuldeep","family":"Kumar","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Saurav","family":"Kumar","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Santosh","family":"Kumar","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Simardeep","family":"Kaur","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Nitish Ranjan","family":"Prakash","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Pankaj","family":"Baiswar","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Alka","family":"Bharati","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Manjeet","family":"Talukdar","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Sanjay","family":"Behera","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"297","published-online":{"date-parts":[[2026,9,29]]},"reference":[{"key":"3989_CR1","doi-asserted-by":"publisher","first-page":"37","DOI":"10.1016\/j.ecoenv.2017.02.028","volume":"140","author":"T Abbas","year":"2017","unstructured":"Abbas T, Rizwan M, Ali S, Zia-Ur-Rehman M, Farooq Qayyum M, Abbas F, Hannan F, Rinklebe J, Ok YS (2017) Effect of biochar on cadmium bioavailability and uptake in wheat (Triticum aestivum L.) grown in a soil with aged contamination. Ecotoxicol Environ Saf 140:37\u201347. https:\/\/doi.org\/10.1016\/j.ecoenv.2017.02.028","journal-title":"Ecotoxicol Environ Saf"},{"issue":"1","key":"3989_CR2","doi-asserted-by":"publisher","first-page":"43","DOI":"10.1270\/jsbbs.61.43","volume":"61","author":"T Abe","year":"2011","unstructured":"Abe T, Taguchi-Shiobara F, Kojima Y, Ebitani T, Kuramata M, Yamamoto T, Yano M, Ishikawa S (2011) Detection of a QTL for accumulating Cd in rice that enables efficient Cd phytoextraction from soil. Breed Sci 61(1):43\u201351. https:\/\/doi.org\/10.1270\/jsbbs.61.43","journal-title":"Breed Sci"},{"issue":"3","key":"3989_CR3","doi-asserted-by":"publisher","first-page":"284","DOI":"10.1270\/jsbbs.63.284","volume":"63","author":"T Abe","year":"2013","unstructured":"Abe T, Nonoue Y, Ono N, Omoteno M, Kuramata M, Fukuoka S, Yamamoto T, Yano M, Ishikawa S (2013) Detection of QTLs to reduce cadmium content in rice grains using LAC23\/Koshihikari chromosome segment substitution lines. Breed Sci 63(3):284\u2013291. https:\/\/doi.org\/10.1270\/jsbbs.63.284","journal-title":"Breed Sci"},{"issue":"12","key":"3989_CR4","doi-asserted-by":"publisher","first-page":"2816","DOI":"10.1105\/tpc.015685","volume":"15","author":"P Achard","year":"2003","unstructured":"Achard P, Vriezen WH, Van Der Straeten D, Harberd NP (2003) Ethylene regulates Arabidopsis development via the modulation of DELLA protein growth repressor function. Plant Cell 15(12):2816\u20132825. https:\/\/doi.org\/10.1105\/tpc.015685","journal-title":"Plant Cell"},{"issue":"1","key":"3989_CR5","doi-asserted-by":"publisher","first-page":"76","DOI":"10.3390\/agronomy13010076","volume":"13","author":"C Adeva","year":"2023","unstructured":"Adeva C, Yun Y-T, Shim K-C, Luong NH, Lee H-S, Kang J-W, Kim H-J, Ahn S-N (2023) QTL mapping of mineral element contents in rice using introgression lines derived from an interspecific cross. Agronomy 13(1):76. https:\/\/doi.org\/10.3390\/agronomy13010076","journal-title":"Agronomy"},{"issue":"8","key":"3989_CR6","doi-asserted-by":"publisher","first-page":"1104","DOI":"10.4161\/psb.6.8.15793","volume":"6","author":"A Alonso-Sim\u00f3n","year":"2011","unstructured":"Alonso-Sim\u00f3n A, Garc\u00eda-Angulo P, M\u00e9lida H, Encina A, \u00c1lvarez JM, Acebes JL (2011) The use of FTIR spectroscopy to monitor modifications in plant cell wall architecture caused by cellulose biosynthesis inhibitors. Plant Signal Behav 6(8):1104\u20131110. https:\/\/doi.org\/10.4161\/psb.6.8.15793","journal-title":"Plant Signal Behav"},{"key":"3989_CR7","doi-asserted-by":"publisher","DOI":"10.3389\/fpls.2022.1035851","volume":"13","author":"KD Aloryi","year":"2022","unstructured":"Aloryi KD, Okpala NE, Amo A, Bello SF, Akaba S, Tian X (2022) A meta-quantitative trait loci analysis identified consensus genomic regions and candidate genes associated with grain yield in rice. Front Plant Sci 13:1035851. https:\/\/doi.org\/10.3389\/fpls.2022.1035851","journal-title":"Front Plant Sci"},{"issue":"1","key":"3989_CR8","doi-asserted-by":"publisher","DOI":"10.1038\/s41598-022-17402-w","volume":"12","author":"C Anilkumar","year":"2022","unstructured":"Anilkumar C, Sah RP, Muhammed Azharudheen TP, Behera S, Singh N, Prakash NR, Sunitha NC, Devanna BN, Marndi BC, Nair SK (2022) Understanding complex genetic architecture of rice grain weight through QTL-meta-analysis and candidate gene identification. Sci Rep 12(1):13832. https:\/\/doi.org\/10.1038\/s41598-022-17402-w","journal-title":"Sci Rep"},{"key":"3989_CR9","doi-asserted-by":"publisher","DOI":"10.1186\/s12864-024-10704-5","volume":"25","author":"S Anwar","year":"2024","unstructured":"Anwar S, Siddique R, Ahmad S, Haider MZ, Ali H, Sami A, Lucas RS, Shafiq M, Nisa BU, Javed B, Akram J, Tabassum J, Javed MA (2024) Genome wide identification and characterization of Bax inhibitor-1 gene family in cucumber (Cucumis sativus) under biotic and abiotic stress. BMC Genomics 25:1032. https:\/\/doi.org\/10.1186\/s12864-024-10704-5","journal-title":"BMC Genomics"},{"issue":"4","key":"3989_CR10","doi-asserted-by":"publisher","DOI":"10.1002\/pld3.14","volume":"1","author":"JD Arbelaez","year":"2017","unstructured":"Arbelaez JD, Maron LG, Jobe TO, Pi\u00f1eros MA, Famoso AN, Rebelo AR, Singh N, Ma Q, Fei Z, Kochian LV, McCouch SR (2017) Aluminum resistance transcription factor 1 (ART1) contributes to natural variation in aluminum resistance in diverse genetic backgrounds of rice (O. sativa). Plant Direct 1(4):e00014. https:\/\/doi.org\/10.1002\/pld3.14","journal-title":"Plant Direct"},{"issue":"14","key":"3989_CR11","doi-asserted-by":"publisher","first-page":"2324","DOI":"10.1093\/bioinformatics\/bth230","volume":"20","author":"A Arcade","year":"2004","unstructured":"Arcade A, Labourdette A, Falque M, Mangin B, Chardon F, Charcosset A, Joets J (2004) BioMercator: integrating genetic maps and QTL towards discovery of candidate genes. Bioinformatics 20(14):2324\u20132326. https:\/\/doi.org\/10.1093\/bioinformatics\/bth230","journal-title":"Bioinformatics"},{"issue":"4","key":"3989_CR12","doi-asserted-by":"publisher","first-page":"709","DOI":"10.1093\/mp\/sst160","volume":"7","author":"RA Arenhart","year":"2014","unstructured":"Arenhart RA, Bai Y, de Oliveira LFV, Neto LB, Schunemann M, dos Santos Maraschin F, Mariath J, Silverio A, Sachetto-Martins G, Margis R, Wang ZY, Margis-Pinheiro M (2014) New insights into aluminum tolerance in rice: The ASR5 protein binds the STAR1 promoter and other aluminum-responsive genes. Mol Plant 7(4):709\u2013721. https:\/\/doi.org\/10.1093\/mp\/sst160","journal-title":"Mol Plant"},{"issue":"3","key":"3989_CR13","doi-asserted-by":"publisher","first-page":"645","DOI":"10.1111\/pce.12655","volume":"39","author":"RA Arenhart","year":"2016","unstructured":"Arenhart RA, Schunemann M, Bucker Neto L, Margis R, Wang ZY, Margis\u2010Pinheiro M (2016) Rice ASR1 and ASR5 are complementary transcription factors regulating aluminium responsive genes. Plant Cell Environ 39(3):645\u2013651. https:\/\/doi.org\/10.1111\/pce.12655","journal-title":"Plant Cell Environ"},{"key":"3989_CR14","first-page":"707","volume":"32","author":"SK Arya","year":"2011","unstructured":"Arya SK, Roy BK (2011) Manganese induced changes in growth, chlorophyll content and antioxidants activity in seedlings of broad bean (Vicia faba L.). J Environ Biol 32:707\u2013712","journal-title":"J Environ Biol"},{"issue":"4","key":"3989_CR15","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0176357","volume":"12","author":"JP Awasthi","year":"2017","unstructured":"Awasthi JP, Saha B, Regon P, Sahoo S, Chowra U, Pradhan A, Roy A, Panda SK (2017) Morpho-physiological analysis of tolerance to aluminum toxicity in rice varieties of North East India. PLoS ONE 12(4):e0176357. https:\/\/doi.org\/10.1371\/journal.pone.0176357","journal-title":"PLoS ONE"},{"key":"3989_CR16","doi-asserted-by":"publisher","first-page":"517","DOI":"10.1007\/s00709-020-01581-2","volume":"258","author":"JP Awasthi","year":"2021","unstructured":"Awasthi JP, Kusunoki K, Saha B, Kobayashi Y, Koyama H, Panda SK (2021) Comparative RNA-Seq analysis of the root revealed transcriptional regulation system for aluminum tolerance in contrasting Indica rice of North East India. Protoplasma 258:517\u2013528. https:\/\/doi.org\/10.1007\/s00709-020-01581-2","journal-title":"Protoplasma"},{"key":"3989_CR17","doi-asserted-by":"publisher","first-page":"69","DOI":"10.1007\/BF02180678","volume":"28","author":"SW Bailey","year":"1995","unstructured":"Bailey SW, Driscoll CT, Hornbeck JW (1995) Acid-base chemistry and aluminum transport in an acidic watershed and pond in New Hampshire. Biogeochemistry 28:69\u201391. https:\/\/doi.org\/10.1007\/BF02180678","journal-title":"Biogeochemistry"},{"issue":"4","key":"3989_CR18","doi-asserted-by":"publisher","first-page":"2438","DOI":"10.1007\/s11105-025-01622-1","volume":"43","author":"C Balakrishnan","year":"2025","unstructured":"Balakrishnan C, Kumar A, Raj R, Verma VK, Kaur S, Rai M, Das SP, Mishra VK (2025) Deciphering genetic variability and marker-trait associations in rice genotypes for low P and high Al toxicity stresses under the mid-hill ecologies of North-Eastern India. Plant Mol Biol Rep 43(4):2438\u20132458. https:\/\/doi.org\/10.1007\/s11105-025-01622-1","journal-title":"Plant Mol Biol Rep"},{"key":"3989_CR19","unstructured":"Bay ND, Suu DT, Buu B, Bong B, Nguyen HT (1999) Identification of quantitative trait loci controlling aluminum tolerance in rice. OMONRICE 7"},{"issue":"1","key":"3989_CR20","doi-asserted-by":"publisher","first-page":"70","DOI":"10.1006\/abio.1996.0292","volume":"239","author":"IFF Benzie","year":"1996","unstructured":"Benzie IFF, Strain JJ (1996) The ferric reducing ability of plasma (FRAP) as a measure of \u201cantioxidant power\u201d: the FRAP assay. Anal Biochem 239(1):70\u201376. https:\/\/doi.org\/10.1006\/abio.1996.0292","journal-title":"Anal Biochem"},{"issue":"8","key":"3989_CR21","doi-asserted-by":"publisher","first-page":"1508","DOI":"10.3390\/agriculture13081508","volume":"13","author":"F Bibi","year":"2023","unstructured":"Bibi F, Rahman A (2023) An overview of climate change impacts on agriculture and their mitigation strategies. Agriculture 13(8):1508. https:\/\/doi.org\/10.3390\/agriculture13081508","journal-title":"Agriculture"},{"key":"3989_CR22","doi-asserted-by":"publisher","first-page":"25","DOI":"10.1016\/S0098-8472(96)01036-2","volume":"37","author":"LM Blair","year":"1997","unstructured":"Blair LM, Taylor GJ (1997) The nature of interaction between aluminum and manganese on growth and metal accumulation in Triticum aestivum. Environ Exp Bot 37:25\u201337. https:\/\/doi.org\/10.1016\/S0098-8472(96)01036-2","journal-title":"Environ Exp Bot"},{"key":"3989_CR23","doi-asserted-by":"publisher","DOI":"10.1186\/s12870-019-1867-y","volume":"19","author":"ZZ Cao","year":"2019","unstructured":"Cao ZZ, Lin XY, Yang YJ, Guan MY, Xu P, Chen MX (2019) Gene identification and transcriptome analysis of low cadmium accumulation rice mutant (lcd1) in response to cadmium stress using MutMap and RNA-seq. BMC Plant Biol 19:250. https:\/\/doi.org\/10.1186\/s12870-019-1867-y","journal-title":"BMC Plant Biol"},{"key":"3989_CR24","doi-asserted-by":"publisher","first-page":"3082","DOI":"10.1021\/es303310t","volume":"47","author":"S Carrasco-Gil","year":"2013","unstructured":"Carrasco-Gil S, Siebner H, LeDuc DL, Webb SM, Mill\u00e1n R, Andrews JC, Hern\u00e1ndez LE (2013) Mercury localization and speciation in plants grown hydroponically or in a natural environment. Environ Sci Technol 47:3082\u20133090. https:\/\/doi.org\/10.1021\/es303310t","journal-title":"Environ Sci Technol"},{"issue":"10","key":"3989_CR25","doi-asserted-by":"publisher","first-page":"2476","DOI":"10.1111\/pce.13843","volume":"43","author":"JD Chang","year":"2020","unstructured":"Chang JD, Huang S, Yamaji N, Zhang W, Ma JF, Zhao FJ (2020) OsNRAMP1 transporter contributes to cadmium and manganese uptake in rice. Plant Cell Environ 43(10):2476\u20132491. https:\/\/doi.org\/10.1111\/pce.13843","journal-title":"Plant Cell Environ"},{"key":"3989_CR26","doi-asserted-by":"publisher","first-page":"154","DOI":"10.1007\/s13201-018-0796-5","volume":"8","author":"ER Chellaiah","year":"2018","unstructured":"Chellaiah ER (2018) Cadmium (heavy metals) bioremediation by Pseudomonas aeruginosa: a minireview. Appl Water Sci 8:154. https:\/\/doi.org\/10.1007\/s13201-018-0796-5","journal-title":"Appl Water Sci"},{"key":"3989_CR27","doi-asserted-by":"publisher","DOI":"10.1016\/j.compag.2020.105471","volume":"174","author":"Z Chu","year":"2020","unstructured":"Chu Z, Yu J (2020) An end-to-end model for rice yield prediction using deep learning fusion. Comput Electron Agric 174:105471. https:\/\/doi.org\/10.1016\/j.compag.2020.105471","journal-title":"Comput Electron Agric"},{"key":"3989_CR28","doi-asserted-by":"publisher","first-page":"161","DOI":"10.1023\/A:1015159601881","volume":"45","author":"M \u010ciamporov\u00e1","year":"2002","unstructured":"\u010ciamporov\u00e1 M (2002) Morphological and structural responses of plant roots to aluminium at organ, tissue, and cellular levels. Biol Plant 45:161\u2013171. https:\/\/doi.org\/10.1023\/A:1015159601881","journal-title":"Biol Plant"},{"key":"3989_CR29","doi-asserted-by":"publisher","first-page":"653","DOI":"10.1007\/BF00011034","volume":"47","author":"RB Clark","year":"1977","unstructured":"Clark RB (1977) Effect of aluminum on growth and mineral elements of Al-tolerant and Al-intolerant corn. Plant Soil 47:653\u2013662. https:\/\/doi.org\/10.1007\/BF00011034","journal-title":"Plant Soil"},{"issue":"4","key":"3989_CR30","doi-asserted-by":"publisher","first-page":"1831","DOI":"10.1104\/pp.109.141408","volume":"150","author":"V Compagnon","year":"2009","unstructured":"Compagnon V, Diehl P, Benveniste I, Meyer D, Schaller H, Schreiber L, Franke R, Pinot F (2009) CYP86B1 is required for very long chain \u03c9-hydroxyacid and \u03b1, \u03c9-dicarboxylic acid synthesis in root and seed suberin polyester. Plant Physiol 150(4):1831\u20131843. https:\/\/doi.org\/10.1104\/pp.109.141408","journal-title":"Plant Physiol"},{"key":"3989_CR31","doi-asserted-by":"publisher","first-page":"403","DOI":"10.1007\/978-3-031-17988-4_19","volume-title":"Phytoremediation: management of environmental contaminants, volume 7","author":"A Corami","year":"2023","unstructured":"Corami A (2023) Nanotechnologies and phytoremediation: pros and cons. Phytoremediation: management of environmental contaminants, volume 7. Springer International Publishing, Cham, pp 403\u2013426. https:\/\/doi.org\/10.1007\/978-3-031-17988-4_19"},{"issue":"2","key":"3989_CR32","doi-asserted-by":"publisher","first-page":"115","DOI":"10.1007\/s12284-009-9028-9","volume":"2","author":"B Courtois","year":"2009","unstructured":"Courtois B, Ahmadi N, Khowaja F, Price AH, Rami JF, Frouin J, Hamelin C, Ruiz M (2009) Rice root genetic architecture: meta-analysis from a drought QTL database. Rice 2(2):115\u2013128. https:\/\/doi.org\/10.1007\/s12284-009-9028-9","journal-title":"Rice"},{"issue":"9","key":"3989_CR33","doi-asserted-by":"publisher","first-page":"1425","DOI":"10.1007\/s00299-014-1626-3","volume":"33","author":"PK Dansana","year":"2014","unstructured":"Dansana PK, Kothari KS, Vij S, Tyagi AK (2014) OsiSAP1 overexpression improves water-deficit stress tolerance in transgenic rice by affecting expression of endogenous stress-related genes. Plant Cell Rep 33(9):1425\u20131440. https:\/\/doi.org\/10.1007\/s00299-014-1626-3","journal-title":"Plant Cell Rep"},{"issue":"6","key":"3989_CR34","doi-asserted-by":"publisher","first-page":"740","DOI":"10.23910\/IJBSM\/2017.8.6.3C0341","volume":"8","author":"A Debnath","year":"2017","unstructured":"Debnath A, Rai M, Tyagi W, Das S (2017) Genetic analysis of yield contributing traits in lowland rice genotypes under acidic soils. Int J Bio-Resour Stress Manag 8(6):740\u2013748. https:\/\/doi.org\/10.23910\/IJBSM\/2017.8.6.3C0341","journal-title":"Int J Bio-Resour Stress Manag"},{"issue":"1","key":"3989_CR35","first-page":"75","volume":"31","author":"AG Devi","year":"2018","unstructured":"Devi AG, Rangappa K, Yadav GS, Devi HL, Barman KK, Kandpal BK, Ngachan SV (2018) Physiological tolerance mechanism of selected rice germplasm of Northeast India to iron toxicity. Indian J Hill Farming 31(1):75\u201381","journal-title":"Indian J Hill Farming"},{"key":"3989_CR36","doi-asserted-by":"publisher","DOI":"10.1016\/j.jhazmat.2024.133688","volume":"466","author":"Q Dong","year":"2024","unstructured":"Dong Q, Wu Y, Wang H, Li B, Huang R, Li H, Wang C (2024) Integrated morphological, physiological and transcriptomic analyses reveal response mechanisms of rice under different cadmium exposure routes. J Hazard Mater 466:133688. https:\/\/doi.org\/10.1016\/j.jhazmat.2024.133688","journal-title":"J Hazard Mater"},{"issue":"9","key":"3989_CR37","doi-asserted-by":"publisher","first-page":"5289","DOI":"10.1021\/acs.chemrev.0c00983","volume":"121","author":"D Drew","year":"2021","unstructured":"Drew D, North RA, Nagarathinam K, Tanabe M (2021) Structures and general transport mechanisms by the major facilitator superfamily (MFS). Chem Rev 121(9):5289\u20135335. https:\/\/doi.org\/10.1021\/acs.chemrev.0c00983","journal-title":"Chem Rev"},{"issue":"2","key":"3989_CR38","doi-asserted-by":"publisher","first-page":"401","DOI":"10.1007\/s10142-014-0361-8","volume":"14","author":"S Dubey","year":"2014","unstructured":"Dubey S, Shri M, Misra P, Lakhwani D, Bag SK, Asif MH, Trivedi PK, Tripathi RD, Chakrabarty D (2014) Heavy metals induce oxidative stress and genome-wide modulation in transcriptome of rice root. Funct Integr Genom 14(2):401\u2013417. https:\/\/doi.org\/10.1007\/s10142-014-0361-8","journal-title":"Funct Integr Genom"},{"issue":"4","key":"3989_CR39","doi-asserted-by":"publisher","first-page":"751","DOI":"10.1046\/j.1365-313x.2003.01661.x","volume":"33","author":"JG Dubouzet","year":"2003","unstructured":"Dubouzet JG, Sakuma Y, Ito Y, Kasuga M, Dubouzet EG, Miura S, Seki M, Shinozaki K, Yamaguchi-Shinozaki K (2003) OsDREB genes in rice, Oryza sativa L., encode transcription activators that function in drought-, high-salt- and cold-responsive gene expression. Plant J 33(4):751\u2013763. https:\/\/doi.org\/10.1046\/j.1365-313x.2003.01661.x","journal-title":"Plant J"},{"issue":"8","key":"3989_CR40","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pgen.1002221","volume":"7","author":"AN Famoso","year":"2011","unstructured":"Famoso AN, Zhao K, Clark RT, Tung CW, Wright MH, Bustamante C, Kochian LV, McCouch SR (2011) Genetic architecture of aluminum tolerance in rice (Oryza sativa) determined through genome-wide association analysis and QTL mapping. PLoS Genet 7(8):e1002221. https:\/\/doi.org\/10.1371\/journal.pgen.1002221","journal-title":"PLoS Genet"},{"key":"3989_CR41","doi-asserted-by":"publisher","DOI":"10.1016\/j.ecoenv.2020.111816","volume":"209","author":"W Fan","year":"2021","unstructured":"Fan W, Liu C, Cao B, Ma S, Hu J, Xiang Z, Zhao A (2021) A meta-analysis of transcriptomic profiles reveals molecular pathways response to cadmium stress of Gramineae. Ecotoxicol Environ Saf 209:111816. https:\/\/doi.org\/10.1016\/j.ecoenv.2020.111816","journal-title":"Ecotoxicol Environ Saf"},{"issue":"12","key":"3989_CR42","doi-asserted-by":"publisher","first-page":"4379","DOI":"10.3390\/ijms21124379","volume":"21","author":"X Feng","year":"2020","unstructured":"Feng X, Zhang L, Wei X, Zhou Y, Dai Y, Zhu Z (2020) OsJAZ13 negatively regulates jasmonate signaling and activates hypersensitive cell death response in rice. Int J Mol Sci 21(12):4379. https:\/\/doi.org\/10.3390\/ijms21124379","journal-title":"Int J Mol Sci"},{"key":"3989_CR43","doi-asserted-by":"publisher","first-page":"690","DOI":"10.3732\/ajb.1200545","volume":"100","author":"DR Fernando","year":"2013","unstructured":"Fernando DR, Marshall AT, Forster PI, Hoebee SE, Siegele R (2013) Multiple metal accumulation within a manganese-specific genus. Am J Bot 100:690\u2013700. https:\/\/doi.org\/10.3732\/ajb.1200545","journal-title":"Am J Bot"},{"key":"3989_CR44","doi-asserted-by":"publisher","first-page":"1129","DOI":"10.1093\/aob\/mcq046","volume":"105","author":"H F\u00fchrs","year":"2010","unstructured":"F\u00fchrs H, Behrens C, Gallien S, Heintz D, Van Dorsselaer A, Braun HP, Horst WJ (2010) Physiological and proteomic characterization of manganese sensitivity and tolerance in rice (Oryza sativa) in comparison with barley (Hordeum vulgare). Ann Bot 105:1129\u20131140. https:\/\/doi.org\/10.1093\/aob\/mcq046","journal-title":"Ann Bot"},{"key":"3989_CR45","doi-asserted-by":"publisher","first-page":"33","DOI":"10.1016\/j.envexpbot.2012.04.006","volume":"83","author":"SM Gallego","year":"2012","unstructured":"Gallego SM, Pena LB, Barcia RA, Azpilicueta CE, Iannone MF, Rosales EP, Benavides MP (2012) Unravelling cadmium toxicity and tolerance in plants: insight into regulatory mechanisms. Environ Exp Bot 83:33\u201346. https:\/\/doi.org\/10.1016\/j.envexpbot.2012.04.006","journal-title":"Environ Exp Bot"},{"key":"3989_CR46","doi-asserted-by":"publisher","DOI":"10.1016\/j.stress.2023.100247","volume":"10","author":"JJ Gallo-Franco","year":"2023","unstructured":"Gallo-Franco JJ, Zuluaga-Yusti I, Restrepo-Garc\u00eda AM, Sosa CC, Zapata-Balanta S, Guti\u00e9rrez-Mar\u00edn JP, Ghneim-Herrera T, Quimbaya M (2023) Transcriptional analysis in four wild and cultivated rice genotypes identifies aluminum-induced genes. Plant Stress 10:100247. https:\/\/doi.org\/10.1016\/j.stress.2023.100247","journal-title":"Plant Stress"},{"key":"3989_CR47","doi-asserted-by":"publisher","DOI":"10.1016\/j.jhazmat.2022.129048","volume":"436","author":"T Gao","year":"2022","unstructured":"Gao T, Wu Q, Xia Y, Liu Y, Zhu J-M, Qi M, Song C, Liu Y, Sun G, Liu C (2022) Flooding-drainage alternations impact mobilization and isotope fractionation of cadmium in soil-rice systems. J Hazard Mater 436:129048. https:\/\/doi.org\/10.1016\/j.jhazmat.2022.129048","journal-title":"J Hazard Mater"},{"issue":"1","key":"3989_CR48","doi-asserted-by":"publisher","first-page":"84","DOI":"10.1111\/j.1744-7909.2008.00730.x","volume":"51","author":"AL Garcia-Oliveira","year":"2009","unstructured":"Garcia-Oliveira AL, Tan L, Fu Y, Sun C (2009) Genetic identification of quantitative trait loci for contents of mineral nutrients in rice grain. J Integr Plant Biol 51(1):84\u201392. https:\/\/doi.org\/10.1111\/j.1744-7909.2008.00730.x","journal-title":"J Integr Plant Biol"},{"issue":"8","key":"3989_CR49","doi-asserted-by":"publisher","first-page":"2628","DOI":"10.1093\/bioinformatics\/btz931","volume":"36","author":"SX Ge","year":"2020","unstructured":"Ge SX, Jung D, Yao R (2020) ShinyGO: a graphical gene-set enrichment tool for animals and plants. Bioinformatics 36(8):2628\u20132629. https:\/\/doi.org\/10.1093\/bioinformatics\/btz931","journal-title":"Bioinformatics"},{"issue":"1","key":"3989_CR50","doi-asserted-by":"publisher","first-page":"463","DOI":"10.1093\/genetics\/155.1.463","volume":"155","author":"B Goffinet","year":"2000","unstructured":"Goffinet B, Gerber S (2000) Quantitative trait loci: a meta-analysis. Genetics 155(1):463\u2013473. https:\/\/doi.org\/10.1093\/genetics\/155.1.463","journal-title":"Genetics"},{"key":"3989_CR51","volume-title":"Statistical procedures for agricultural research","author":"KA Gomez","year":"1984","unstructured":"Gomez KA, Gomez AA (1984) Statistical procedures for agricultural research, second ed. John Wiley and Sons, New York","edition":"second ed"},{"issue":"4978","key":"3989_CR52","doi-asserted-by":"publisher","first-page":"267","DOI":"10.1126\/science.2145628","volume":"250","author":"MJ Guiltinan","year":"1990","unstructured":"Guiltinan MJ, Marcotte WR Jr, Quatrano RS (1990) A plant leucine zipper protein that recognizes an abscisic acid response element. Science 250(4978):267\u2013271. https:\/\/doi.org\/10.1126\/science.2145628","journal-title":"Science"},{"issue":"1","key":"3989_CR53","doi-asserted-by":"publisher","first-page":"241","DOI":"10.1023\/B:PLSO.0000016554.87519.d6","volume":"258","author":"TR Guo","year":"2004","unstructured":"Guo TR, Zhang GP, Zhou MX, Wu FB, Chen JX (2004) Effect of aluminum and cadmium toxicity on growth and antioxidant enzyme activities of two barley genotypes with difference Al tolerance. Plant Soil 258(1):241\u2013248. https:\/\/doi.org\/10.1023\/B:PLSO.0000016554.87519.d6","journal-title":"Plant Soil"},{"key":"3989_CR54","doi-asserted-by":"publisher","first-page":"250","DOI":"10.1016\/j.geoderma.2014.07.019","volume":"235\u2013236","author":"SM Haefele","year":"2014","unstructured":"Haefele SM, Nelson A, Hijmans RJ (2014) Soil quality and constraints in global rice production. Geoderma 235\u2013236:250\u2013259. https:\/\/doi.org\/10.1016\/j.geoderma.2014.07.019","journal-title":"Geoderma"},{"issue":"5","key":"3989_CR55","doi-asserted-by":"publisher","first-page":"944","DOI":"10.3390\/agriculture13050944","volume":"13","author":"Z Haider","year":"2023","unstructured":"Haider Z, Ahmad I, Zia S, Gan Y (2023) Recent developments in rice molecular breeding for tolerance to heavy metal toxicity. Agriculture 13(5):944. https:\/\/doi.org\/10.3390\/agriculture13050944","journal-title":"Agriculture"},{"key":"3989_CR56","doi-asserted-by":"publisher","DOI":"10.1101\/2022.04.08.487609","author":"J Hallgren","year":"2022","unstructured":"Hallgren J, Tsirigos KD, Pedersen MD, Almagro Armenteros JJ, Marcatili P, Nielsen H, Krogh A, Winther O (2022) DeepTMHMM predicts alpha and beta transmembrane proteins using deep neural networks. bioRxiv. https:\/\/doi.org\/10.1101\/2022.04.08.487609","journal-title":"bioRxiv"},{"issue":"7193","key":"3989_CR57","doi-asserted-by":"publisher","first-page":"391","DOI":"10.1038\/nature06877","volume":"453","author":"M Hanikenne","year":"2008","unstructured":"Hanikenne M, Talke IN, Haydon MJ, Lanz C, Nolte A, Motte P, Kroymann J, Weigel D, Kr\u00e4mer U (2008) Evolution of metal hyperaccumulation required cis-regulatory changes and triplication of HMA4. Nature 453(7193):391\u2013395. https:\/\/doi.org\/10.1038\/nature06877","journal-title":"Nature"},{"key":"3989_CR58","doi-asserted-by":"publisher","first-page":"1492","DOI":"10.3389\/fpls.2017.01492","volume":"8","author":"MK Hasan","year":"2017","unstructured":"Hasan MK, Cheng Y, Kanwar MK, Chu XY, Ahammed GJ, Qi ZY (2017) Responses of plant proteins to heavy metal stress\u2014a review. Front Plant Sci 8:1492. https:\/\/doi.org\/10.3389\/fpls.2017.01492","journal-title":"Front Plant Sci"},{"key":"3989_CR59","doi-asserted-by":"publisher","DOI":"10.1038\/srep00670","volume":"2","author":"S Hayashi","year":"2012","unstructured":"Hayashi S, Wakasa Y, Takaiwa F (2012) Functional integration between defence and IRE1-mediated ER stress response in rice. Sci Rep 2:670. https:\/\/doi.org\/10.1038\/srep00670","journal-title":"Sci Rep"},{"key":"3989_CR60","doi-asserted-by":"publisher","DOI":"10.1016\/j.envexpbot.2022.105097","volume":"204","author":"L He","year":"2022","unstructured":"He L, Li J (2022) Integrated transcriptome and physiological analysis of rice seedlings reveals different cadmium response mechanisms between indica and japonica varieties. Environ Exp Bot 204:105097. https:\/\/doi.org\/10.1016\/j.envexpbot.2022.105097","journal-title":"Environ Exp Bot"},{"key":"3989_CR61","doi-asserted-by":"publisher","first-page":"428","DOI":"10.1111\/j.1469-8137.2011.03814.x","volume":"192","author":"C Hermans","year":"2011","unstructured":"Hermans C, Chen J, Coppens F, Inz\u00e9 D, Verbruggen N (2011) Low magnesium status in plants enhances tolerance to cadmium exposure. New Phytol 192:428\u2013436. https:\/\/doi.org\/10.1111\/j.1469-8137.2011.03814.x","journal-title":"New Phytol"},{"issue":"1","key":"3989_CR62","doi-asserted-by":"publisher","first-page":"57","DOI":"10.1556\/0806.43.2015.044","volume":"44","author":"BL Hu","year":"2016","unstructured":"Hu BL, Huang DR, Xiao YQ, Fan YY, Chen DZ, Zhuang JY (2016) Mapping QTLs for mineral element contents in brown and milled rice using an Oryza sativa \u00d7 O. rufipogon backcross inbred line population. Cereal Res Commun 44(1):57\u201368. https:\/\/doi.org\/10.1556\/0806.43.2015.044","journal-title":"Cereal Res Commun"},{"issue":"7","key":"3989_CR63","doi-asserted-by":"publisher","first-page":"1563","DOI":"10.1016\/S2095-3119(17)61847-1","volume":"17","author":"D Hu","year":"2018","unstructured":"Hu D, Sheng Z, Li Q, Chen W, Wei X, Xie L, Jiao G, Shao G, Wang J, Tang S, Hu P (2018) Identification of QTLs associated with cadmium concentration in rice grains. J Integr Agric 17(7):1563\u20131573. https:\/\/doi.org\/10.1016\/S2095-3119(17)61847-1","journal-title":"J Integr Agric"},{"key":"3989_CR64","doi-asserted-by":"publisher","first-page":"909","DOI":"10.3389\/fpls.2020.00909","volume":"11","author":"B Hu","year":"2020","unstructured":"Hu B, Deng F, Chen G, Chen X, Gao W, Long L, Xia J, Chen ZH (2020) Evolution of abscisic acid signaling for stress responses to toxic metals and metalloids. Front Plant Sci 11:909. https:\/\/doi.org\/10.3389\/fpls.2020.00909","journal-title":"Front Plant Sci"},{"key":"3989_CR65","doi-asserted-by":"publisher","DOI":"10.1155\/2021\/5561734","author":"B Hu","year":"2021","unstructured":"Hu B, Li X, Wu T, Huang D, Huang F, Yin J, Wu Y (2021) Identification and validation of QTLs for macronutrient contents in brown and milled rice using two backcross populations between Oryza sativa and O. rufipogon. BioMed Res Int. https:\/\/doi.org\/10.1155\/2021\/5561734","journal-title":"BioMed Res Int"},{"issue":"1","key":"3989_CR66","doi-asserted-by":"publisher","first-page":"941","DOI":"10.1007\/s11104-024-06669-9","volume":"504","author":"R Hu","year":"2024","unstructured":"Hu R, Limmer MA, Seyfferth AL (2024) How manganese affects rice cadmium uptake and translocation in vegetative and mature plants. Plant Soil 504(1):941\u2013954. https:\/\/doi.org\/10.1007\/s11104-024-06669-9","journal-title":"Plant Soil"},{"issue":"50","key":"3989_CR67","doi-asserted-by":"publisher","first-page":"10885","DOI":"10.1021\/acs.jafc.5b04932","volume":"63","author":"Y Huang","year":"2015","unstructured":"Huang Y, Sun C, Min J, Chen Y, Tong C, Bao J (2015) Association mapping of quantitative trait loci for mineral element contents in whole grain rice (Oryza sativa L.). J Agric Food Chem 63(50):10885\u201310892. https:\/\/doi.org\/10.1021\/acs.jafc.5b04932","journal-title":"J Agric Food Chem"},{"issue":"3","key":"3989_CR68","doi-asserted-by":"publisher","first-page":"57","DOI":"10.4067\/S0718-27912008000300006","volume":"8","author":"C Inostroza-Blancheteau","year":"2008","unstructured":"Inostroza-Blancheteau C, Soto B, Ulloa P, Aquea F, Reyes-D\u00edaz M (2008) Resistance mechanisms of aluminum (Al3\u207a) phytotoxicity in cereals: physiological, genetic and molecular bases. J Soil Sci Plant Nutr 8(3):57\u201371. https:\/\/doi.org\/10.4067\/S0718-27912008000300006","journal-title":"J Soil Sci Plant Nutr"},{"issue":"2","key":"3989_CR69","doi-asserted-by":"publisher","first-page":"345","DOI":"10.1111\/j.1469-8137.2005.01516.x","volume":"168","author":"S Ishikawa","year":"2005","unstructured":"Ishikawa S, Ae N, Yano M (2005) Chromosomal regions with quantitative trait loci controlling cadmium concentration in brown rice (Oryza sativa). New Phytol 168(2):345\u2013350. https:\/\/doi.org\/10.1111\/j.1469-8137.2005.01516.x","journal-title":"New Phytol"},{"issue":"3","key":"3989_CR70","doi-asserted-by":"publisher","first-page":"923","DOI":"10.1093\/jxb\/erp360","volume":"61","author":"S Ishikawa","year":"2010","unstructured":"Ishikawa S, Abe T, Kuramata M, Yamaguchi M, Ando T, Yamamoto T, Yano M (2010) A major quantitative trait locus for increasing cadmium-specific concentration in rice grain is located on the short arm of chromosome 7. J Exp Bot 61(3):923\u2013934. https:\/\/doi.org\/10.1093\/jxb\/erp360","journal-title":"J Exp Bot"},{"issue":"47","key":"3989_CR71","doi-asserted-by":"publisher","first-page":"19166","DOI":"10.1073\/pnas.1211132109","volume":"109","author":"S Ishikawa","year":"2012","unstructured":"Ishikawa S, Ishimaru Y, Igura M, Kuramata M, Abe T, Senoura T, Hase Y, Arao T, Nishizawa NK, Nakanishi H (2012) Ion-beam irradiation, gene identification, and marker-assisted breeding in the development of low-cadmium rice. Proc Natl Acad Sci U S A 109(47):19166\u201319171. https:\/\/doi.org\/10.1073\/pnas.1211132109","journal-title":"Proc Natl Acad Sci U S A"},{"issue":"1","key":"3989_CR72","doi-asserted-by":"publisher","first-page":"286","DOI":"10.1038\/srep00286","volume":"2","author":"Y Ishimaru","year":"2012","unstructured":"Ishimaru Y, Takahashi R, Bashir K, Shimo H, Senoura T, Sugimoto K, Ono K, Yano M, Ishikawa S, Arao T, Nishizawa NK (2012) Characterizing the role of rice NRAMP5 in manganese, iron and cadmium transport. Sci Rep 2(1):286. https:\/\/doi.org\/10.1038\/srep00286","journal-title":"Sci Rep"},{"issue":"12","key":"3989_CR73","doi-asserted-by":"publisher","DOI":"10.3390\/genes13122330","volume":"13","author":"AF Islam","year":"2022","unstructured":"Islam AF, Mustahsan W, Tabien R, Awika JM, Septiningsih EM, Thomson MJ (2022) Identifying the genetic basis of mineral elements in rice grain using genome-wide association mapping. Genes 13(12):2330. https:\/\/doi.org\/10.3390\/genes13122330","journal-title":"Genes"},{"issue":"1","key":"3989_CR74","doi-asserted-by":"publisher","DOI":"10.1186\/1471-2164-11-73","volume":"11","author":"M Jain","year":"2010","unstructured":"Jain M, Ghanashyam C, Bhattacharjee A (2010) Comprehensive expression analysis suggests overlapping and specific roles of rice glutathione S-transferase genes during development and stress responses. BMC Genomics 11(1):73. https:\/\/doi.org\/10.1186\/1471-2164-11-73","journal-title":"BMC Genomics"},{"issue":"8","key":"3989_CR75","doi-asserted-by":"publisher","first-page":"1766","DOI":"10.1080\/01904167.2022.2099892","volume":"46","author":"S Jaiswal","year":"2023","unstructured":"Jaiswal S, Kumar A, Choudhury BU, Thangam R, Lal MK, Shettigar N, Kumar R, Verma H, Bhattacharjee B, Mishra VK (2023) Development of ammonium nitrate free nutrient media for aluminium toxicity tolerance screening of rice genotypes from North-Eastern India. J Plant Nutr 46(8):1766\u20131776. https:\/\/doi.org\/10.1080\/01904167.2022.2099892","journal-title":"J Plant Nutr"},{"issue":"Part B","key":"3989_CR76","doi-asserted-by":"publisher","DOI":"10.1016\/j.envexpbot.2024.106030","volume":"228","author":"S Jaiswal","year":"2024","unstructured":"Jaiswal S, Kumari A, Kumar K, Laxmi V, Kaur S, Kumar A, Verma H, Shimray P, Touthang L, Talukdar M, Mishra VK, Singh BK (2024) Deciphering genetic mechanisms of Al toxicity tolerance through meta-QTL analysis in rice (Oryza sativa L.). Environ Exp Bot 228(Part B):106030. https:\/\/doi.org\/10.1016\/j.envexpbot.2024.106030","journal-title":"Environ Exp Bot"},{"key":"3989_CR77","doi-asserted-by":"publisher","DOI":"10.1038\/s41598-026-38841-9","volume":"16","author":"S Jaiswal","year":"2026","unstructured":"Jaiswal S, Kumar K, Kumari A, Singh BK, Bharati A, Baiswar P, Hazarika S, Hazarika S (2026) Genomic dissection of iron toxicity tolerance in rice identifies key loci, candidate genes, and associated haplotypes. Sci Rep 16:12767. https:\/\/doi.org\/10.1038\/s41598-026-38841-9","journal-title":"Sci Rep"},{"key":"3989_CR78","doi-asserted-by":"publisher","first-page":"1309","DOI":"10.1111\/j.1365-3040.2006.01509.x","volume":"29","author":"DL Jones","year":"2006","unstructured":"Jones DL, Blancaflor EB, Kochian LV, Gilroy S (2006) Spatial coordination of aluminium uptake, production of reactive oxygen species, callose production and wall rigidification in maize roots. Plant Cell Environ 29:1309\u20131318. https:\/\/doi.org\/10.1111\/j.1365-3040.2006.01509.x","journal-title":"Plant Cell Environ"},{"key":"3989_CR79","doi-asserted-by":"publisher","first-page":"205","DOI":"10.1007\/s10653-007-9109-x","volume":"30","author":"MC Jung","year":"2008","unstructured":"Jung MC (2008) Contamination by Cd, Cu, Pb, and Zn in mine wastes from abandoned metal mines classified as mineralization types in Korea. Environ Geochem Health 30:205\u2013217. https:\/\/doi.org\/10.1007\/s10653-007-9109-x","journal-title":"Environ Geochem Health"},{"issue":"1","key":"3989_CR80","doi-asserted-by":"publisher","first-page":"8","DOI":"10.1186\/1471-2229-9-8","volume":"9","author":"T Kashiwagi","year":"2009","unstructured":"Kashiwagi T, Shindoh K, Hirotsu N, Ishimaru K (2009) Evidence for separate translocation pathways in determining cadmium accumulation in grain and aerial plant parts in rice. BMC Plant Biol 9(1):8. https:\/\/doi.org\/10.1186\/1471-2229-9-8","journal-title":"BMC Plant Biol"},{"issue":"4","key":"3989_CR81","doi-asserted-by":"publisher","first-page":"56","DOI":"10.1007\/s11032-019-0962-y","volume":"39","author":"B Khahani","year":"2019","unstructured":"Khahani B, Tavakol E, Shariati JV (2019) Genome-wide meta-analysis on yield and yield-related QTLs in barley (Hordeum vulgare L.). Mol Breed 39(4):56. https:\/\/doi.org\/10.1007\/s11032-019-0962-y","journal-title":"Mol Breed"},{"issue":"1","key":"3989_CR82","doi-asserted-by":"publisher","DOI":"10.1038\/s41598-021-86259-2","volume":"11","author":"B Khahani","year":"2021","unstructured":"Khahani B, Tavakol E, Shariati V, Rossini L (2021) Meta-QTL and ortho-MQTL analyses identified genomic regions controlling rice yield, yield-related traits and root architecture under water deficit conditions. Sci Rep 11(1):6942. https:\/\/doi.org\/10.1038\/s41598-021-86259-2","journal-title":"Sci Rep"},{"key":"3989_CR83","doi-asserted-by":"publisher","first-page":"571","DOI":"10.1146\/annurev-arplant-043014-114822","volume":"66","author":"LV Kochian","year":"2015","unstructured":"Kochian LV, Pi\u00f1eros MA, Liu J, Magalhaes JV (2015) Plant adaptation to acid soils: the molecular basis for crop aluminum resistance. Annu Rev Plant Biol 66:571\u2013598. https:\/\/doi.org\/10.1146\/annurev-arplant-043014-114822","journal-title":"Annu Rev Plant Biol"},{"issue":"3","key":"3989_CR84","doi-asserted-by":"publisher","first-page":"415","DOI":"10.1111\/j.1365-313X.2004.02146.x","volume":"39","author":"S Koike","year":"2004","unstructured":"Koike S, Inoue H, Mizuno D, Takahashi M, Nakanishi H, Mori S, Nishizawa NK (2004) OsYSL2 is a rice metal-nicotianamine transporter that is regulated by iron and expressed in the phloem. Plant J 39(3):415\u2013424. https:\/\/doi.org\/10.1111\/j.1365-313X.2004.02146.x","journal-title":"Plant J"},{"issue":"4","key":"3989_CR85","doi-asserted-by":"publisher","first-page":"1402","DOI":"10.1104\/pp.114.253229","volume":"167","author":"PM Kopittke","year":"2015","unstructured":"Kopittke PM, Moore KL, Lombi E, Gianoncelli A, Ferguson BJ, Blamey FPC, Menzies NW, Nicholson TM, McKenna BA, Wang P, Tollenaere A (2015) Identification of the primary lesion of toxic aluminum in plant roots. Plant Physiol 167(4):1402\u20131411. https:\/\/doi.org\/10.1104\/pp.114.253229","journal-title":"Plant Physiol"},{"key":"3989_CR86","doi-asserted-by":"publisher","DOI":"10.1016\/j.apgeochem.2019.104388","volume":"108","author":"A Kubier","year":"2019","unstructured":"Kubier A, Wilkin RT, Pichler T (2019) Cadmium in soils and groundwater: a review. Appl Geochem 108:104388. https:\/\/doi.org\/10.1016\/j.apgeochem.2019.104388","journal-title":"Appl Geochem"},{"key":"3989_CR87","doi-asserted-by":"publisher","first-page":"751","DOI":"10.3389\/fpls.2018.00751","volume":"9","author":"S Kumar","year":"2018","unstructured":"Kumar S, Trivedi PK (2018) Glutathione S-transferases: role in combating abiotic stresses including arsenic detoxification in plants. Front Plant Sci 9:751. https:\/\/doi.org\/10.3389\/fpls.2018.00751","journal-title":"Front Plant Sci"},{"issue":"2","key":"3989_CR88","doi-asserted-by":"publisher","first-page":"133","DOI":"10.1093\/dnares\/dsu046","volume":"22","author":"V Kumar","year":"2015","unstructured":"Kumar V, Singh A, Mithra SA, Krishnamurthy SL, Parida SK, Jain S, Tiwari KK, Kumar P, Rao AR, Sharma SK, Mohapatra T (2015) Genome-wide association mapping of salinity tolerance in rice (Oryza sativa). DNA Res 22(2):133\u2013145. https:\/\/doi.org\/10.1093\/dnares\/dsu046","journal-title":"DNA Res"},{"key":"3989_CR89","unstructured":"Kumar A (2021) Genome-wide association study and identification of candidate genes responsible for grain zinc content in rice (Oryza sativa L.). Master\u2019s Thesis, Chinese Academy of Agricultural Sciences, Beijing, China"},{"key":"3989_CR90","doi-asserted-by":"publisher","first-page":"1133115","DOI":"10.3389\/fpls.2023.1133115","volume":"14","author":"A Kumari","year":"2023","unstructured":"Kumari A, Sharma D, Sharma P, Wang C, Verma V, Patil A, Imran M, Singh MP, Kumar K, Paritosh K, Caragea D, Kapoor S, Chandel G, Grover A, Jagadish SVK, Agarwal SK, Agarwal M (2023) Meta-QTL and haplo-pheno analysis reveal superior haplotype combinations associated with low grain chalkiness under high temperature in rice. Front Plant Sci 14:1133115. https:\/\/doi.org\/10.3389\/fpls.2023.1133115","journal-title":"Front Plant Sci"},{"key":"3989_CR91","doi-asserted-by":"publisher","unstructured":"Kumari A, Sharma D, Sahil KK, Sevanthi AM, Agarwal M (2024) Meta-analysis of mapping studies: Integrating QTLs towards candidate gene discovery, In: Anjoy P, Kumar K, Chandra G, Gaikwad K (Eds.), Genomics data analysis for crop improvement. Springer Protocols Handbooks, Springer, Singapore. https:\/\/doi.org\/10.1007\/978-981-99-6913-5_7","DOI":"10.1007\/978-981-99-6913-5_7"},{"key":"3989_CR92","doi-asserted-by":"publisher","first-page":"303","DOI":"10.3389\/fpls.2014.00303","volume":"5","author":"A Largo-Gosens","year":"2014","unstructured":"Largo-Gosens A, Hern\u00e1ndez-Altamirano M, Garc\u00eda-Calvo L, Alonso-Sim\u00f3n A, \u00c1lvarez J, Acebes JL (2014) Fourier transform mid infrared spectroscopy applications for monitoring the structural plasticity of plant cell walls. Front Plant Sci 5:303. https:\/\/doi.org\/10.3389\/fpls.2014.00303","journal-title":"Front Plant Sci"},{"key":"3989_CR93","doi-asserted-by":"publisher","first-page":"325","DOI":"10.1093\/nar\/30.1.325","volume":"30","author":"M Lescot","year":"2002","unstructured":"Lescot M, D\u00e9hais P, Thijs G, Marchal K, Moreau Y, Van de Peer Y, Rouz\u00e9 P, Rombauts S (2002) PlantCARE, a database of plant cis-acting regulatory elements and a portal to tools for in silico analysis of promoter sequences. Nucleic Acids Res 30:325\u2013327. https:\/\/doi.org\/10.1093\/nar\/30.1.325","journal-title":"Nucleic Acids Res"},{"issue":"9","key":"3989_CR94","doi-asserted-by":"publisher","first-page":"2723","DOI":"10.1093\/jxb\/erv076","volume":"66","author":"J Li","year":"2015","unstructured":"Li J, Han Y, Liu L, Chen Y, Du Y, Zhang J, Sun H, Zhao Q (2015) QRT9, a quantitative trait locus controlling root thickness and root length in upland rice. J Exp Bot 66(9):2723\u20132732. https:\/\/doi.org\/10.1093\/jxb\/erv076","journal-title":"J Exp Bot"},{"issue":"4","key":"3989_CR95","doi-asserted-by":"publisher","first-page":"388","DOI":"10.1515\/biolog-2017-0048","volume":"72","author":"P Li","year":"2017","unstructured":"Li P, Song A, Li Z, Fan F, Liang Y (2017) Transcriptome analysis in leaves of rice (Oryza sativa) under high manganese stress. Biologia (Bratisl) 72(4):388\u2013397. https:\/\/doi.org\/10.1515\/biolog-2017-0048","journal-title":"Biologia (Bratisl)"},{"key":"3989_CR96","doi-asserted-by":"publisher","first-page":"3664","DOI":"10.1093\/jxb\/eraa115","volume":"71","author":"GH Lilay","year":"2020","unstructured":"Lilay GH, Castro PH, Guedes JG, Almeida DM, Campilho A, Azevedo H, Aarts MGM, Saibo NJM, Assuncao AGL (2020) Rice F-bZIP transcription factors regulate the zinc deficiency response. J Exp Bot 71:3664\u20133677. https:\/\/doi.org\/10.1093\/jxb\/eraa115","journal-title":"J Exp Bot"},{"key":"3989_CR97","doi-asserted-by":"publisher","DOI":"10.1186\/s12864-016-2559-8","volume":"17","author":"J Liu","year":"2016","unstructured":"Liu J, Li Y, Wang W, Gai J, Li Y (2016) Genome-wide analysis of MATE transporters and expression patterns of a subgroup of MATE genes in response to aluminum toxicity in soybean. BMC Genomics 17:223. https:\/\/doi.org\/10.1186\/s12864-016-2559-8","journal-title":"BMC Genomics"},{"issue":"1","key":"3989_CR98","doi-asserted-by":"publisher","first-page":"17704","DOI":"10.1038\/s41598-017-18090-7","volume":"7","author":"C Liu","year":"2017","unstructured":"Liu C, Chen G, Li Y, Peng Y, Zhang A, Hong K, Jiang H, Ruan B, Zhang B, Yang S, Gao Z, Qian Q (2017) Characterization of a major QTL for manganese accumulation in rice grain. Sci Rep 7(1):17704. https:\/\/doi.org\/10.1038\/s41598-017-18090-7","journal-title":"Sci Rep"},{"issue":"1","key":"3989_CR99","doi-asserted-by":"publisher","first-page":"42","DOI":"10.1016\/j.rsci.2018.12.003","volume":"26","author":"W Liu","year":"2019","unstructured":"Liu W, Pan X, Li Y, Duan Y, Min J, Liu S, Liu L, Sheng X, Li X (2019) Identification of QTLs and validation of qCd-2associated with grain cadmium concentrations in rice. Rice Sci 26(1):42\u201349. https:\/\/doi.org\/10.1016\/j.rsci.2018.12.003","journal-title":"Rice Sci"},{"key":"3989_CR100","doi-asserted-by":"publisher","first-page":"127","DOI":"10.1186\/s12864-020-6474-7","volume":"21","author":"A Liu","year":"2020","unstructured":"Liu A, Zhou Z, Yi Y, Chen G (2020) Transcriptome analysis reveals the roles of stem nodes in cadmium transport to rice grain. BMC Genomics 21:127. https:\/\/doi.org\/10.1186\/s12864-020-6474-7","journal-title":"BMC Genomics"},{"issue":"3","key":"3989_CR101","doi-asserted-by":"publisher","first-page":"305","DOI":"10.1007\/s12041-008-0049-8","volume":"87","author":"K Lu","year":"2008","unstructured":"Lu K, Li L, Zheng X, Zhang Z, Mou T, Hu Z (2008) Quantitative trait loci controlling Cu, Ca, Zn, Mn and Fe content in rice grains. J Genet 87(3):305\u2013310. https:\/\/doi.org\/10.1007\/s12041-008-0049-8","journal-title":"J Genet"},{"issue":"4","key":"3989_CR102","doi-asserted-by":"publisher","first-page":"543","DOI":"10.3390\/plants13040543","volume":"13","author":"L Lu","year":"2024","unstructured":"Lu L, Chen X, Tan Q, Li W, Sun Y, Zhang Z, Song Y, Zeng R (2024) Gibberellin-mediated sensitivity of rice roots to aluminum stress. Plants (Basel) 13(4):543. https:\/\/doi.org\/10.3390\/plants13040543","journal-title":"Plants (Basel)"},{"issue":"1","key":"3989_CR103","doi-asserted-by":"publisher","DOI":"10.1038\/s41467-018-03088-0","volume":"9","author":"JS Luo","year":"2018","unstructured":"Luo JS, Huang J, Zeng DL, Peng JS, Zhang GB, Ma HL, Guan Y, Yi HY, Fu YL, Han B, Lin HX, Gong JM (2018) A defensin-like protein drives cadmium efflux and allocation in rice. Nat Commun 9(1):645. https:\/\/doi.org\/10.1038\/s41467-018-03088-0","journal-title":"Nat Commun"},{"issue":"6","key":"3989_CR104","doi-asserted-by":"publisher","first-page":"652","DOI":"10.1093\/pcp\/pcf081","volume":"43","author":"JF Ma","year":"2002","unstructured":"Ma JF, Shen R, Zhao Z, Wissuwa M, Takeuchi Y, Ebitani T, Yano M (2002) Response of rice to Al stress and identification of quantitative trait loci for Al tolerance. Plant Cell Physiol 43(6):652\u2013659. https:\/\/doi.org\/10.1093\/pcp\/pcf081","journal-title":"Plant Cell Physiol"},{"key":"3989_CR105","doi-asserted-by":"publisher","first-page":"91","DOI":"10.1007\/s10725-007-9183-1","volume":"52","author":"B Ma","year":"2007","unstructured":"Ma B, Wan J, Shen Z (2007) H\u2082O\u2082 production and antioxidant responses in seeds and early seedlings of two different rice varieties exposed to aluminum. Plant Growth Regul 52:91\u2013100. https:\/\/doi.org\/10.1007\/s10725-007-9183-1","journal-title":"Plant Growth Regul"},{"issue":"1","key":"3989_CR106","doi-asserted-by":"publisher","first-page":"56","DOI":"10.5958\/0974-0228.2025.00006.X","volume":"73","author":"S Maity","year":"2025","unstructured":"Maity S, Mukhopadhyay D, Banik GC, Roy B, Debnath MK (2025) Effects of aluminium on rice genotypes under varying pH levels in solution. J Indian Soc Soil Sci 73(1):56\u201371. https:\/\/doi.org\/10.5958\/0974-0228.2025.00006.X","journal-title":"J Indian Soc Soil Sci"},{"issue":"394","key":"3989_CR107","doi-asserted-by":"publisher","first-page":"137","DOI":"10.1093\/jxb\/erh030","volume":"55","author":"C Mao","year":"2004","unstructured":"Mao C, Yi K, Yang L, Zheng B, Wu Y, Liu F, Wu P (2004) Identification of aluminium-regulated genes by cDNA-AFLP in rice (Oryza sativa L.): aluminium-regulated genes for the metabolism of cell wall components. J Exp Bot 55(394):137\u2013143. https:\/\/doi.org\/10.1093\/jxb\/erh030","journal-title":"J Exp Bot"},{"key":"3989_CR108","doi-asserted-by":"publisher","DOI":"10.1016\/j.stress.2021.100049","volume":"3","author":"LF Martini","year":"2022","unstructured":"Martini LF, Noldin JA, Schaedler CE, Fipke MV, Viana VE, Borges CT, Zimmer PD, Agostinetto D, Avila LA (2022) Cross-talk between cold and bispyribac-sodium on rice seedlings. Plant Stress 3:100049. https:\/\/doi.org\/10.1016\/j.stress.2021.100049","journal-title":"Plant Stress"},{"issue":"9","key":"3989_CR109","doi-asserted-by":"publisher","first-page":"1156","DOI":"10.1021\/ac60045a016","volume":"22","author":"RM McCready","year":"1950","unstructured":"McCready RM, Guggolz J, Silviera V, Owens HS (1950) Determination of starch and amylose in vegetables. Anal Chem 22(9):1156\u20131158. https:\/\/doi.org\/10.1021\/ac60045a016","journal-title":"Anal Chem"},{"key":"3989_CR110","doi-asserted-by":"publisher","DOI":"10.3389\/fpls.2017.01822","volume":"8","author":"L Meng","year":"2017","unstructured":"Meng L, Wang B, Zhao X, Ponce K, Qian Q, Ye G (2017) Association mapping of ferrous, zinc, and aluminum tolerance at the seedling stage in Indica rice using MAGIC populations. Front Plant Sci 8:300894. https:\/\/doi.org\/10.3389\/fpls.2017.01822","journal-title":"Front Plant Sci"},{"key":"3989_CR111","doi-asserted-by":"publisher","unstructured":"Milovanovic V, Smutka L (2017) Asian countries in the global rice market. Acta Univ Agric Silvic Mendel Brun 65 (2):679\u2013688. https:\/\/doi.org\/10.11118\/actaun201765020679","DOI":"10.11118\/actaun201765020679"},{"key":"3989_CR112","first-page":"439","volume-title":"Handbook of plant nutrition","author":"SC Miyasaka","year":"2007","unstructured":"Miyasaka SC, Hue NV, Dunn MA (2007) Aluminum. In: Barker AV, Pilbeam DJ (eds) Handbook of plant nutrition. Taylor and Francis, Boca Raton, pp 439\u2013497"},{"key":"3989_CR113","doi-asserted-by":"publisher","first-page":"79","DOI":"10.1007\/s11104-008-9872-1","volume":"320","author":"MDLL Mora","year":"2009","unstructured":"Mora MDLL, Rosas A, Ribera A, Rengel Z (2009) Differential tolerance to Mn toxicity in perennial ryegrass genotypes: involvement of antioxidative enzymes and root exudation of carboxylates. Plant Soil 320:79\u201389. https:\/\/doi.org\/10.1007\/s11104-008-9872-1","journal-title":"Plant Soil"},{"key":"3989_CR114","doi-asserted-by":"publisher","first-page":"507","DOI":"10.1023\/A:1024899215845","volume":"253","author":"JS Moroni","year":"2003","unstructured":"Moroni JS, Scott BJ, Wratten N (2003) Differential tolerance of high manganese among rapeseed genotypes. Plant Soil 253:507\u2013519. https:\/\/doi.org\/10.1023\/A:1024899215845","journal-title":"Plant Soil"},{"key":"3989_CR115","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1007\/s11738-016-2296-2","volume":"38","author":"N Muhammad","year":"2016","unstructured":"Muhammad N, Cai S, Shah JM, Zhang G (2016) The combined treatment of Mn and Al alleviates the toxicity of Al or Mn stress alone in barley. Acta Physiol Plant 38:1\u20137. https:\/\/doi.org\/10.1007\/s11738-016-2296-2","journal-title":"Acta Physiol Plant"},{"issue":"4","key":"3989_CR116","doi-asserted-by":"publisher","first-page":"464","DOI":"10.1111\/j.1747-0765.2006.00055.x","volume":"52","author":"H Nakanishi","year":"2006","unstructured":"Nakanishi H, Ogawa I, Ishimaru Y, Mori S, Nishizawa NK (2006) Iron deficiency enhances cadmium uptake and translocation mediated by the Fe2\u207a transporters OsIRT1 and OsIRT2 in rice. Soil Sci Plant Nutr 52(4):464\u2013469. https:\/\/doi.org\/10.1111\/j.1747-0765.2006.00055.x","journal-title":"Soil Sci Plant Nutr"},{"issue":"2","key":"3989_CR117","doi-asserted-by":"publisher","first-page":"137","DOI":"10.1046\/j.1365-313x.2003.01708.x","volume":"34","author":"Y Narusaka","year":"2003","unstructured":"Narusaka Y, Nakashima K, Shinwari ZK, Sakuma Y, Furihata T, Abe H, Narusaka M, Shinozaki K, Yamaguchi\u2010Shinozaki K (2003) Interaction between two cis\u2010acting elements, ABRE and DRE, in ABA\u2010dependent expression of Arabidopsis rd29A gene in response to dehydration and high\u2010salinity stresses. Plant J 34(2):137\u2013148. https:\/\/doi.org\/10.1046\/j.1365-313x.2003.01708.x","journal-title":"Plant J"},{"key":"3989_CR118","doi-asserted-by":"publisher","first-page":"1476","DOI":"10.4236\/ajps.2012.310178","volume":"3","author":"R Nazar","year":"2012","unstructured":"Nazar R, Iqbal N, Masood A, Khan MIR, Syeed S, Khan NA (2012) Cadmium toxicity in plants and role of mineral nutrients in its alleviation. Am J Plant Sci 3:1476\u20131489. https:\/\/doi.org\/10.4236\/ajps.2012.310178","journal-title":"Am J Plant Sci"},{"key":"3989_CR119","doi-asserted-by":"publisher","DOI":"10.1016\/j.geodrs.2022.e00571","volume":"30","author":"T Nel","year":"2022","unstructured":"Nel T, Clarke CE, Hardie AG (2022) Evaluation of simple and multivariate linear regression models for exchangeable base cation conversion between seven measurement techniques on South African soils. Geoderma Reg 30:e00571. https:\/\/doi.org\/10.1016\/j.geodrs.2022.e00571","journal-title":"Geoderma Reg"},{"key":"3989_CR120","doi-asserted-by":"publisher","first-page":"134","DOI":"10.2134\/agronj1983.00021962007500010034x","volume":"75","author":"LE Nelson","year":"1983","unstructured":"Nelson LE (1983) Tolerances of 20 rice cultivars to excess Al and Mn. Agron J 75:134\u2013138. https:\/\/doi.org\/10.2134\/agronj1983.00021962007500010034x","journal-title":"Agron J"},{"issue":"6","key":"3989_CR121","doi-asserted-by":"publisher","first-page":"772","DOI":"10.1007\/s00438-002-0686-1","volume":"267","author":"V Nguyen","year":"2002","unstructured":"Nguyen V, Nguyen B, Sarkarung S, Martinez C, Paterson A, Nguyen H (2002) Mapping of genes controlling aluminum tolerance in rice: comparison of different genetic backgrounds. Mol Genet Genomics 267(6):772\u2013780. https:\/\/doi.org\/10.1007\/s00438-002-0686-1","journal-title":"Mol Genet Genomics"},{"issue":"4","key":"3989_CR122","doi-asserted-by":"publisher","first-page":"583","DOI":"10.1007\/s00122-002-1072-4","volume":"106","author":"BD Nguyen","year":"2003","unstructured":"Nguyen BD, Brar DS, Bui BC, Nguyen TV, Pham LN, Nguyen HT (2003) Identification and mapping of the QTL for aluminum tolerance introgressed from the new source, Oryza rufipogon Griff, into indica rice (Oryza sativa L.). Theor Appl Genet 106(4):583\u2013593. https:\/\/doi.org\/10.1007\/s00122-002-1072-4","journal-title":"Theor Appl Genet"},{"key":"3989_CR123","unstructured":"Nguyen BD (2001) Molecular mapping of aluminum tolerance in rice. Texas Tech University"},{"issue":"1","key":"3989_CR124","doi-asserted-by":"publisher","first-page":"139","DOI":"10.1007\/s11104-009-0141-8","volume":"329","author":"GJ Norton","year":"2010","unstructured":"Norton GJ, Deacon CM, Xiong L, Huang S, Meharg AA, Price AH (2010) Genetic mapping of the rice ionome in leaves and grain: identification of QTLs for 17 elements including arsenic, cadmium, iron and selenium. Plant Soil 329(1):139\u2013153. https:\/\/doi.org\/10.1007\/s11104-009-0141-8","journal-title":"Plant Soil"},{"key":"3989_CR125","doi-asserted-by":"publisher","first-page":"1085998","DOI":"10.3389\/fpls.2022.1085998","volume":"13","author":"R Ofoe","year":"2023","unstructured":"Ofoe R, Thomas RH, Asiedu SK, Wang-Pruski G, Fofana B, Abbey L (2023) Aluminum in plant: Benefits, toxicity and tolerance mechanisms. Front Plant Sci 13:1085998. https:\/\/doi.org\/10.3389\/fpls.2022.1085998","journal-title":"Front Plant Sci"},{"issue":"3","key":"3989_CR126","doi-asserted-by":"publisher","first-page":"563","DOI":"10.1007\/s00122-009-1176-1","volume":"120","author":"J Orjuela","year":"2010","unstructured":"Orjuela J, Garavito A, Bouniol M, Arbelaez JD, Moreno L, Kimball J, Wilson G, Rami JF, Tohme J, McCouch SR, Lorieux M (2010) A universal core genetic map for rice. Theor Appl Genet 120(3):563\u2013572. https:\/\/doi.org\/10.1007\/s00122-009-1176-1","journal-title":"Theor Appl Genet"},{"key":"3989_CR127","doi-asserted-by":"publisher","first-page":"269","DOI":"10.1016\/j.envexpbot.2005.09.005","volume":"58","author":"V Page","year":"2006","unstructured":"Page V, Le Bayon RC, Feller U (2006) Partitioning of zinc, cadmium, manganese and cobalt in wheat (Triticum aestivum) and lupin (Lupinus albus) and further release into the soil. Environ Exp Bot 58:269\u2013278. https:\/\/doi.org\/10.1016\/j.envexpbot.2005.09.005","journal-title":"Environ Exp Bot"},{"issue":"8","key":"3989_CR128","doi-asserted-by":"publisher","first-page":"932","DOI":"10.1080\/00103624.2011.558962","volume":"42","author":"S Pal","year":"2011","unstructured":"Pal S, Datta SC, Reza SK (2011) Interrelationship of organic acids and aluminum concentrations in rhizosphere and nonrhizosphere soil solution of rice in acidic soil. Commun Soil Sci Plant Anal 42(8):932\u2013944. https:\/\/doi.org\/10.1080\/00103624.2011.558962","journal-title":"Commun Soil Sci Plant Anal"},{"issue":"1","key":"3989_CR129","doi-asserted-by":"publisher","DOI":"10.1038\/s41598-020-68742-4","volume":"10","author":"X Pan","year":"2020","unstructured":"Pan X, Li Y, Liu W, Liu S, Min J, Xiong H, Dong Z, Duan Y, Yu Y, Li X (2020) QTL mapping and candidate gene analysis of cadmium accumulation in polished rice by genome-wide association study. Sci Rep 10(1):11791. https:\/\/doi.org\/10.1038\/s41598-020-68742-4","journal-title":"Sci Rep"},{"key":"3989_CR130","doi-asserted-by":"publisher","first-page":"168","DOI":"10.1016\/j.jplph.2018.09.013","volume":"231","author":"C Pandey","year":"2018","unstructured":"Pandey C, Gupta M (2018) Selenium amelioration of arsenic toxicity in rice shows genotypic variation: a transcriptomic and biochemical analysis. J Plant Physiol 231:168\u2013181. https:\/\/doi.org\/10.1016\/j.jplph.2018.09.013","journal-title":"J Plant Physiol"},{"key":"3989_CR131","doi-asserted-by":"publisher","first-page":"723","DOI":"10.3389\/fpls.2015.00723","volume":"6","author":"P Pandey","year":"2015","unstructured":"Pandey P, Ramegowda V, Senthil-Kumar M (2015) Shared and unique responses of plants to multiple individual stresses and stress combinations: physiological and molecular mechanisms. Front Plant Sci 6:723. https:\/\/doi.org\/10.3389\/fpls.2015.00723","journal-title":"Front Plant Sci"},{"key":"3989_CR132","doi-asserted-by":"publisher","first-page":"509","DOI":"10.1023\/B:BILE.0000019559.84305.47","volume":"26","author":"MW Pfaffl","year":"2004","unstructured":"Pfaffl MW, Tichopad A, Prgomet C, Neuvians TP (2004) Determination of stable housekeeping genes, differentially regulated target genes and sample integrity: BestKeeper\u2014Excel-based tool using pair-wise correlations. Biotechnol Lett 26:509\u2013515. https:\/\/doi.org\/10.1023\/B:BILE.0000019559.84305.47","journal-title":"Biotechnol Lett"},{"issue":"3","key":"3989_CR133","doi-asserted-by":"publisher","first-page":"432","DOI":"10.3390\/plants13030432","volume":"13","author":"H Qin","year":"2024","unstructured":"Qin H, Xiao M, Li Y, Huang R (2024) Ethylene modulates rice root plasticity under abiotic stresses. Plants 13(3):432. https:\/\/doi.org\/10.3390\/plants13030432","journal-title":"Plants"},{"issue":"5","key":"3989_CR134","doi-asserted-by":"publisher","first-page":"1852","DOI":"10.1111\/pce.14852","volume":"47","author":"T Qing","year":"2024","unstructured":"Qing T, Xie TC, Zhu QY, Lu HP, Liu JX (2024) Regulation of metal homoeostasis by two F-group bZIP transcription factors bZIP48 and bZIP50 in rice. Plant Cell Environ 47(5):1852\u20131864. https:\/\/doi.org\/10.1111\/pce.14852","journal-title":"Plant Cell Environ"},{"key":"3989_CR135","doi-asserted-by":"publisher","DOI":"10.1016\/j.envpol.2022.118923","volume":"300","author":"R Raghuvanshi","year":"2022","unstructured":"Raghuvanshi R, Raut VV, Pandey M, Jeyakumar S, Verulkar S, Suprasanna P, Srivastava AK (2022) Arsenic and cadmium induced macronutrient deficiencies trigger contrasting gene expression changes in rice. Environ Pollut 300:118923. https:\/\/doi.org\/10.1016\/j.envpol.2022.118923","journal-title":"Environ Pollut"},{"issue":"3","key":"3989_CR136","doi-asserted-by":"publisher","first-page":"523","DOI":"10.1007\/s13353-024-00925-5","volume":"66","author":"R Raj","year":"2025","unstructured":"Raj R, Kumar A, Balakrishnan C, Kaur S, Verma VK, Rai M, Das SP, Mishra VK (2025) Unraveling the genetic diversity, population structure, and stability for yield-related traits of rice genotypes in mid-hills of northeastern India. J Appl Genet 66(3):523\u2013543. https:\/\/doi.org\/10.1007\/s13353-024-00925-5","journal-title":"J Appl Genet"},{"issue":"3","key":"3989_CR137","doi-asserted-by":"publisher","first-page":"3951","DOI":"10.15666\/aeer\/1803_39513964","volume":"18","author":"A Rasheed","year":"2020","unstructured":"Rasheed A, Fahad S, Hassan MU, Tahir MM, Aamer M, Wu ZM (2020) A review on aluminum toxicity and quantitative trait loci mapping in rice (Oryza sativa L.). Appl Ecol Environ Res 18(3):3951\u20133964. https:\/\/doi.org\/10.15666\/aeer\/1803_39513964","journal-title":"Appl Ecol Environ Res"},{"key":"3989_CR138","first-page":"57","volume-title":"Sustainable soil and land management and climate change","author":"A Rasheed","year":"2021","unstructured":"Rasheed A, Hassan MU, Fahad S, Aamer M, Batool M, Ilyas M, Shang F, Wu Z, Li H (2021) Heavy metals stress and plants defense responses. Sustainable soil and land management and climate change. CRC Press, pp 57\u201382"},{"issue":"4","key":"3989_CR139","doi-asserted-by":"publisher","first-page":"1783","DOI":"10.1104\/pp.112.210773","volume":"161","author":"S Rasmussen","year":"2013","unstructured":"Rasmussen S, Barah P, Suarez-Rodriguez MC, Bressendorff S, Friis P, Costantino P, Bones AM, Nielsen HB, Mundy J (2013) Transcriptome responses to combinations of stresses in Arabidopsis. Plant Physiol 161(4):1783\u20131794. https:\/\/doi.org\/10.1104\/pp.112.210773","journal-title":"Plant Physiol"},{"issue":"2","key":"3989_CR140","doi-asserted-by":"publisher","DOI":"10.1002\/sae2.70048","volume":"4","author":"A Raza","year":"2025","unstructured":"Raza A, Khare T, Zhang X, Rahman MM, Hussain M, Gill SS, Chen ZH, Zhou M, Hu Z, Varshney RK (2025) Novel strategies for designing climate-smart crops to ensure sustainable agriculture and future food security. J Sustain Agric Environ 4(2):e70048. https:\/\/doi.org\/10.1002\/sae2.70048","journal-title":"J Sustain Agric Environ"},{"key":"3989_CR141","doi-asserted-by":"publisher","first-page":"101","DOI":"10.1007\/BF01394561","volume":"14","author":"WJ Rees","year":"1961","unstructured":"Rees WJ, Sidrak GH (1961) Inter-relationship of aluminium and manganese toxicities towards plants. Plant Soil 14:101\u2013117. https:\/\/doi.org\/10.1007\/BF01394561","journal-title":"Plant Soil"},{"key":"3989_CR142","doi-asserted-by":"publisher","DOI":"10.1016\/j.chemosphere.2020.128938","volume":"266","author":"M Riaz","year":"2021","unstructured":"Riaz M, Kamran M, Fang Y, Yang G, Rizwan M, Ali S, Zhou Y, Wang Q, Deng L, Wang Y, Wang X (2021) Boron supply alleviates cadmium toxicity in rice (Oryza sativa L.) by enhancing cadmium adsorption on cell wall and triggering antioxidant defense system in roots. Chemosphere 266:128938. https:\/\/doi.org\/10.1016\/j.chemosphere.2020.128938","journal-title":"Chemosphere"},{"key":"3989_CR143","doi-asserted-by":"publisher","first-page":"17859","DOI":"10.1007\/s11356-016-6436-4","volume":"23","author":"M Rizwan","year":"2016","unstructured":"Rizwan M, Ali S, Adrees M, Rizvi H, Zia-ur-Rehman M, Hannan F, Ok YS (2016) Cadmium stress in rice: toxic effects, tolerance mechanisms, and management: a critical review. Environ Sci Pollut Res Int 23:17859\u201317879. https:\/\/doi.org\/10.1007\/s11356-016-6436-4","journal-title":"Environ Sci Pollut Res Int"},{"key":"3989_CR144","doi-asserted-by":"publisher","unstructured":"Rodr\u00edguez-Serrano M, Romero-Puertas MC, Zabalza A, Corpas FJ, G\u00f3mez M, Del R\u00edo LA, Sandalio LM (2006) Cadmium effect on oxidative metabolism of pea (Pisum sativum L.) roots. Imaging of reactive oxygen species and nitric oxide accumulation in vivo. Plant Cell Environ 29(8):1532\u20131544. https:\/\/doi.org\/10.1111\/j.1365-3040.2006.01531.x","DOI":"10.1111\/j.1365-3040.2006.01531.x"},{"key":"3989_CR145","doi-asserted-by":"publisher","first-page":"156","DOI":"10.1071\/FP12393","volume":"41","author":"Y Rojas-Lillo","year":"2014","unstructured":"Rojas-Lillo Y, Alberdi M, Acevedo P, Inostroza-Blancheteau C, Rengel Z, de la Luz Mora M, Reyes-D\u00edaz M (2014) Manganese toxicity and UV-B radiation differentially influence the physiology and biochemistry of highbush blueberry (Vaccinium corymbosum) cultivars. Funct Plant Biol 41:156\u2013167. https:\/\/doi.org\/10.1071\/FP12393","journal-title":"Funct Plant Biol"},{"key":"3989_CR146","doi-asserted-by":"publisher","first-page":"253","DOI":"10.1080\/01904160601118034","volume":"30","author":"A Rosas","year":"2007","unstructured":"Rosas A, Rengel Z, de la Luz Mora M (2007) Manganese supply and pH influence growth, carboxylate exudation and peroxidase activity of ryegrass and white clover. J Plant Nutr 30:253\u2013270. https:\/\/doi.org\/10.1080\/01904160601118034","journal-title":"J Plant Nutr"},{"issue":"3","key":"3989_CR147","doi-asserted-by":"publisher","first-page":"505","DOI":"10.1038\/s41437-020-00390-w","volume":"126","author":"P Ruang-areerate","year":"2021","unstructured":"Ruang-areerate P, Travis AJ, Pinson SR, Tarpley L, Eizenga GC, Guerinot ML, Salt DE, Douglas A, Price AH, Norton GJ (2021) Genome-wide association mapping for grain manganese in rice (Oryza sativa L.) using a multi-experiment approach. Heredity 126(3):505\u2013520. https:\/\/doi.org\/10.1038\/s41437-020-00390-w","journal-title":"Heredity"},{"key":"3989_CR148","doi-asserted-by":"publisher","first-page":"32","DOI":"10.1016\/j.plantsci.2008.01.012","volume":"175","author":"G Rzewuski","year":"2008","unstructured":"Rzewuski G, Sauter M (2008) Ethylene biosynthesis and signaling in rice. Plant Sci 175:32\u201342. https:\/\/doi.org\/10.1016\/j.plantsci.2008.01.012","journal-title":"Plant Sci"},{"issue":"2","key":"3989_CR149","doi-asserted-by":"publisher","first-page":"e6","DOI":"10.1093\/pcp\/pcs183","volume":"54","author":"H Sakai","year":"2013","unstructured":"Sakai H, Lee SS, Tanaka T, Numa H, Kim J, Kawahara Y, Wakimoto H, Yang CC, Iwamoto M, Abe T, Yamada Y, Muto A, Inokuchi H, Ikemura T, Matsumoto T, Sasaki T, Itoh T (2013) Rice annotation project database (RAP-DB): an integrative and interactive database for rice genomics. Plant Cell Physiol 54(2):e6\u2013e6. https:\/\/doi.org\/10.1093\/pcp\/pcs183","journal-title":"Plant Cell Physiol"},{"issue":"6","key":"3989_CR150","doi-asserted-by":"publisher","first-page":"925","DOI":"10.1002\/jsfa.3916","volume":"90","author":"N Sarwar","year":"2010","unstructured":"Sarwar N, Saifullah MSS, Zia MH, Naeem A, Bibi S, Farid G (2010) Role of mineral nutrition in minimizing cadmium accumulation by plants. J Sci Food Agric 90(6):925\u2013937. https:\/\/doi.org\/10.1002\/jsfa.3916","journal-title":"J Sci Food Agric"},{"issue":"5","key":"3989_CR151","doi-asserted-by":"publisher","first-page":"2155","DOI":"10.1105\/tpc.112.096925","volume":"24","author":"A Sasaki","year":"2012","unstructured":"Sasaki A, Yamaji N, Yokosho K, Ma JF (2012) Nramp5 is a major transporter responsible for manganese and cadmium uptake in rice. Plant Cell 24(5):2155\u20132167. https:\/\/doi.org\/10.1105\/tpc.112.096925","journal-title":"Plant Cell"},{"issue":"2","key":"3989_CR152","doi-asserted-by":"publisher","first-page":"196","DOI":"10.1270\/jsbbs.61.196","volume":"61","author":"H Sato","year":"2011","unstructured":"Sato H, Shirasawa S, Maeda H, Nakagomi K, Kaji R, Ohta H, Yamaguchi M, Nishio T (2011) Analysis of QTL for lowering cadmium concentration in rice grains from \u2018LAC23.\u2019 Breed Sci 61(2):196\u2013200. https:\/\/doi.org\/10.1270\/jsbbs.61.196","journal-title":"Breed Sci"},{"issue":"6","key":"3989_CR153","doi-asserted-by":"publisher","first-page":"1101","DOI":"10.1038\/nprot.2008.73","volume":"3","author":"TD Schmittgen","year":"2008","unstructured":"Schmittgen TD, Livak KJ (2008) Analyzing real-time PCR data by the comparative CT method. Nat Protoc 3(6):1101\u20131108. https:\/\/doi.org\/10.1038\/nprot.2008.73","journal-title":"Nat Protoc"},{"issue":"1","key":"3989_CR154","doi-asserted-by":"publisher","first-page":"421","DOI":"10.1104\/pp.17.00030","volume":"174","author":"L Shaar-Moshe","year":"2017","unstructured":"Shaar-Moshe L, Blumwald E, Peleg Z (2017) Unique physiological and transcriptional shifts under combinations of salinity, drought, and heat. Plant Physiol 174(1):421\u2013434. https:\/\/doi.org\/10.1104\/pp.17.00030","journal-title":"Plant Physiol"},{"key":"3989_CR155","doi-asserted-by":"publisher","first-page":"181","DOI":"10.1631\/jzus.2007.B0181","volume":"8","author":"IH Shamsi","year":"2007","unstructured":"Shamsi IH, Wei K, Jilani G, Zhang GP (2007) Interactions of cadmium and aluminum toxicity in their effect on growth and physiological parameters in soybean. J Zhejiang Univ Sci B 8:181\u2013188. https:\/\/doi.org\/10.1631\/jzus.2007.B0181","journal-title":"J Zhejiang Univ Sci B"},{"issue":"2","key":"3989_CR156","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0192116","volume":"13","author":"A Shrestha","year":"2018","unstructured":"Shrestha A, Dziwornu AK, Ueda Y, Wu LB, Mathew B, Frei M (2018) Genome-wide association study to identify candidate loci and genes for Mn toxicity tolerance in rice. PLoS ONE 13(2):e0192116. https:\/\/doi.org\/10.1371\/journal.pone.0192116","journal-title":"PLoS ONE"},{"key":"3989_CR157","doi-asserted-by":"publisher","DOI":"10.1093\/aobpla\/plv054","volume":"7","author":"PS Shukla","year":"2015","unstructured":"Shukla PS, Agarwal P, Gupta K, Agarwal PK (2015) Molecular characterization of an MYB transcription factor from a succulent halophyte involved in stress tolerance. AoB Plants 7:plv054. https:\/\/doi.org\/10.1093\/aobpla\/plv054","journal-title":"AoB Plants"},{"issue":"3","key":"3989_CR158","doi-asserted-by":"publisher","first-page":"144","DOI":"10.5344\/ajev.1965.16.3.144","volume":"16","author":"VL Singleton","year":"1965","unstructured":"Singleton VL, Rossi JA (1965) Colorimetry of total phenolics with phosphomolybdic-phosphotungstic acid reagents. Am J Enol Vitic 16(3):144\u2013158. https:\/\/doi.org\/10.5344\/ajev.1965.16.3.144","journal-title":"Am J Enol Vitic"},{"issue":"1","key":"3989_CR159","doi-asserted-by":"publisher","first-page":"155","DOI":"10.1104\/pp.116.1.155","volume":"116","author":"M Sivaguru","year":"1998","unstructured":"Sivaguru M, Horst WJ (1998) The distal part of the transition zone is the most aluminum-sensitive apical root zone of maize. Plant Physiol 116(1):155\u2013163. https:\/\/doi.org\/10.1104\/pp.116.1.155","journal-title":"Plant Physiol"},{"key":"3989_CR160","doi-asserted-by":"publisher","DOI":"10.3389\/fpls.2025.1501878","author":"A Sonu Kumar","year":"2025","unstructured":"Sonu Kumar A, Singh VJ, Bhowmick PK, Nandakumar S, Yadav S, Krishnan SG, Ellur RK, Bollinedi H, Singh AK, Vinod KK (2025) Genome-wide association analysis of grain iron and zinc in rice grown under agroclimatic sites with contrasting soil iron status. Front Plant Sci. https:\/\/doi.org\/10.3389\/fpls.2025.1501878","journal-title":"Front Plant Sci"},{"issue":"15","key":"3989_CR161","doi-asserted-by":"publisher","first-page":"2082","DOI":"10.1093\/bioinformatics\/bts313","volume":"28","author":"O Sosnowski","year":"2012","unstructured":"Sosnowski O, Charcosset A, Joets J (2012) BioMercator V3: an upgrade of genetic map compilation and quantitative trait loci meta-analysis algorithms. Bioinformatics 28(15):2082\u20132083. https:\/\/doi.org\/10.1093\/bioinformatics\/bts313","journal-title":"Bioinformatics"},{"key":"3989_CR162","doi-asserted-by":"publisher","first-page":"85","DOI":"10.1093\/treephys\/25.1.85","volume":"25","author":"SB St. Clair","year":"2005","unstructured":"St. Clair SB, Lynch JP (2005) Element accumulation patterns of deciduous and evergreen tree seedlings on acid soils: implications for sensitivity to manganese toxicity. Tree Physiol 25:85\u201392. https:\/\/doi.org\/10.1093\/treephys\/25.1.85","journal-title":"Tree Physiol"},{"key":"3989_CR163","doi-asserted-by":"publisher","DOI":"10.3389\/fpls.2014.00685","volume":"5","author":"B Steffens","year":"2014","unstructured":"Steffens B (2014) The role of ethylene and ROS in salinity, heavy metal, and flooding responses in rice. Front Plant Sci 5:685. https:\/\/doi.org\/10.3389\/fpls.2014.00685","journal-title":"Front Plant Sci"},{"issue":"10","key":"3989_CR164","doi-asserted-by":"publisher","first-page":"2857","DOI":"10.1093\/jxb\/erz093","volume":"70","author":"F Sui","year":"2019","unstructured":"Sui F, Zhao D, Zhu H, Gong Y, Tang Z, Huang XY, Zhang G, Zhao FJ (2019) Map-based cloning of a new total loss-of-function allele of OsHMA3 causes high cadmium accumulation in rice grain. J Exp Bot 70(10):2857\u20132871. https:\/\/doi.org\/10.1093\/jxb\/erz093","journal-title":"J Exp Bot"},{"key":"3989_CR165","doi-asserted-by":"publisher","DOI":"10.1038\/s41598-019-46684-w","volume":"9","author":"L Sun","year":"2019","unstructured":"Sun L, Wang J, Song K, Sun Y, Qin Q, Xue Y (2019) Transcriptome analysis of rice (Oryza sativa L.) shoots responsive to cadmium stress. Sci Rep 9:10177. https:\/\/doi.org\/10.1038\/s41598-019-46684-w","journal-title":"Sci Rep"},{"issue":"1","key":"3989_CR166","doi-asserted-by":"publisher","first-page":"144","DOI":"10.1093\/pcp\/pcr157","volume":"53","author":"H Takahashi","year":"2012","unstructured":"Takahashi H, Kawakatsu T, Wakasa Y, Hayashi S, Takaiwa F (2012) A rice transmembrane bZIP transcription factor, OsbZIP39, regulates the endoplasmic reticulum stress response. Plant Cell Physiol 53(1):144\u2013153. https:\/\/doi.org\/10.1093\/pcp\/pcr157","journal-title":"Plant Cell Physiol"},{"issue":"2","key":"3989_CR167","doi-asserted-by":"publisher","first-page":"570","DOI":"10.1111\/jipb.13440","volume":"65","author":"Z Tang","year":"2023","unstructured":"Tang Z, Wang HQ, Chen J, Chang JD, Zhao FJ (2023) Molecular mechanisms underlying the toxicity and detoxification of trace metals and metalloids in plants. J Integr Plant Biol 65(2):570\u2013593. https:\/\/doi.org\/10.1111\/jipb.13440","journal-title":"J Integr Plant Biol"},{"issue":"8","key":"3989_CR168","doi-asserted-by":"publisher","first-page":"1533","DOI":"10.1080\/07388551.2023.2299769","volume":"44","author":"Q Tang","year":"2024","unstructured":"Tang Q, Wei S, Zheng X, Tu P, Tao F (2024) APETALA2\/ethylene-responsive factors in higher plant and their roles in regulation of plant stress response. Crit Rev Biotechnol 44(8):1533\u20131551. https:\/\/doi.org\/10.1080\/07388551.2023.2299769","journal-title":"Crit Rev Biotechnol"},{"issue":"6","key":"3989_CR169","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0198589","volume":"13","author":"Y Tao","year":"2018","unstructured":"Tao Y, Niu Y, Wang Y, Chen T, Naveed SA, Zhang J, Xu J, Li Z (2018) Genome-wide association mapping of aluminum toxicity tolerance and fine mapping of a candidate gene for Nrat1 in rice. PLoS ONE 13(6):e0198589. https:\/\/doi.org\/10.1371\/journal.pone.0198589","journal-title":"PLoS ONE"},{"key":"3989_CR170","doi-asserted-by":"publisher","first-page":"183","DOI":"10.1034\/j.1399-3054.1998.1040206.x","volume":"104","author":"GJ Taylor","year":"1998","unstructured":"Taylor GJ, Blarney FPC, Edwards DG (1998) Antagonistic and synergistic interactions between aluminum and manganese on growth of Vigna unguiculata at low ionic strength. Physiol Plant 104:183\u2013194. https:\/\/doi.org\/10.1034\/j.1399-3054.1998.1040206.x","journal-title":"Physiol Plant"},{"issue":"8","key":"3989_CR171","doi-asserted-by":"publisher","first-page":"1441","DOI":"10.1101\/gr.184001","volume":"11","author":"S Temnykh","year":"2001","unstructured":"Temnykh S, DeClerck G, Lukashova A, Lipovich L, Cartinhour S, McCouch S (2001) Computational and experimental analysis of microsatellites in rice (Oryza sativa L.): frequency, length variation, transposon associations, and genetic marker potential. Genome Res 11(8):1441\u20131452. https:\/\/doi.org\/10.1101\/gr.184001","journal-title":"Genome Res"},{"key":"3989_CR172","doi-asserted-by":"publisher","first-page":"1175","DOI":"10.1007\/s00122-009-1244-6","volume":"120","author":"K Tezuka","year":"2010","unstructured":"Tezuka K, Miyadate H, Katou K, Kodama I, Matsumoto S, Kawamoto T, Masaki S, Satoh H, Yamaguchi M, Sakurai K, Takahashi H, Satoh-Nagasawa N, Watanabe A, Fujimura T, Akagi H (2010) A single recessive gene controls cadmium translocation in the cadmium hyperaccumulating rice cultivar Cho-Ko-Koku. Theor Appl Genet 120:1175\u20131182. https:\/\/doi.org\/10.1007\/s00122-009-1244-6","journal-title":"Theor Appl Genet"},{"issue":"W1","key":"3989_CR173","doi-asserted-by":"publisher","first-page":"W228","DOI":"10.1093\/nar\/gkac278","volume":"50","author":"V Thumuluri","year":"2022","unstructured":"Thumuluri V, Almagro Armenteros JJ, Johansen AR, Nielsen H, Winther O (2022) DeepLoc 2.0: multi-label subcellular localization prediction using protein language models. Nucleic Acids Res 50(W1):W228\u2013W234. https:\/\/doi.org\/10.1093\/nar\/gkac278","journal-title":"Nucleic Acids Res"},{"issue":"3","key":"3989_CR174","doi-asserted-by":"publisher","first-page":"644","DOI":"10.1111\/j.1469-8137.2009.02784.x","volume":"182","author":"D Ueno","year":"2009","unstructured":"Ueno D, Kono I, Yokosho K, Ando T, Yano M, Ma JF (2009a) A major quantitative trait locus controlling cadmium translocation in rice (Oryza sativa). New Phytol 182(3):644\u2013653. https:\/\/doi.org\/10.1111\/j.1469-8137.2009.02784.x","journal-title":"New Phytol"},{"issue":"12","key":"3989_CR175","doi-asserted-by":"publisher","first-page":"2223","DOI":"10.1093\/pcp\/pcp160","volume":"50","author":"D Ueno","year":"2009","unstructured":"Ueno D, Koyama E, Kono I, Ando T, Yano M, Ma JF (2009b) Identification of a novel major quantitative trait locus controlling distribution of Cd between roots and shoots in rice. Plant Cell Physiol 50(12):2223\u20132233. https:\/\/doi.org\/10.1093\/pcp\/pcp160","journal-title":"Plant Cell Physiol"},{"issue":"52","key":"3989_CR176","doi-asserted-by":"publisher","first-page":"20959","DOI":"10.1073\/pnas.1116531109","volume":"108","author":"S Uraguchi","year":"2011","unstructured":"Uraguchi S, Kamiya T, Sakamoto T, Kasai K, Sato Y, Nagamura Y, Yoshida A, Kyozuka J, Ishikawa S, Fujiwara T (2011) Low-affinity cation transporter (OsLCT1) regulates cadmium transport into rice grains. Proc Natl Acad Sci U S A 108(52):20959\u201320964. https:\/\/doi.org\/10.1073\/pnas.1116531109","journal-title":"Proc Natl Acad Sci U S A"},{"key":"3989_CR177","doi-asserted-by":"publisher","first-page":"153","DOI":"10.1023\/B:BIOP.0000024295.27419.89","volume":"48","author":"A Vassilev","year":"2004","unstructured":"Vassilev A, Lidon F, Scotti P, da Graca M, Yordanov I (2004) Cadmium-induced changes in chloroplast lipids and photosystem activities in barley plants. Biol Plant 48:153\u2013156. https:\/\/doi.org\/10.1023\/B:BIOP.0000024295.27419.89","journal-title":"Biol Plant"},{"key":"3989_CR178","doi-asserted-by":"publisher","first-page":"49","DOI":"10.1186\/1471-2105-8-49","volume":"8","author":"JB Veyrieras","year":"2007","unstructured":"Veyrieras JB, Goffinet B, Charcosset A (2007) MetaQTL: a package of new computational methods for the meta-analysis of QTL mapping experiments. BMC Bioinformatics 8:49. https:\/\/doi.org\/10.1186\/1471-2105-8-49","journal-title":"BMC Bioinformatics"},{"issue":"1","key":"3989_CR179","doi-asserted-by":"publisher","first-page":"129","DOI":"10.1590\/S1677-04202005000100011","volume":"17","author":"VA Vitorello","year":"2005","unstructured":"Vitorello VA, Capaldi FR, Stefanuto VA (2005) Recent advances in aluminum toxicity and resistance in higher plants. Braz J Plant Physiol 17(1):129\u2013143. https:\/\/doi.org\/10.1590\/S1677-04202005000100011","journal-title":"Braz J Plant Physiol"},{"issue":"2","key":"3989_CR180","doi-asserted-by":"publisher","first-page":"227","DOI":"10.1023\/A:1014487428033","volume":"238","author":"YX Wang","year":"2002","unstructured":"Wang YX, Wu P, Wu YR, Yan XL (2002) Molecular marker analysis of manganese toxicity tolerance in rice under greenhouse conditions. Plant Soil 238(2):227\u2013233. https:\/\/doi.org\/10.1023\/A:1014487428033","journal-title":"Plant Soil"},{"issue":"2","key":"3989_CR181","doi-asserted-by":"publisher","first-page":"237","DOI":"10.1093\/aob\/mcv090","volume":"116","author":"W Wang","year":"2015","unstructured":"Wang W, Zhao XQ, Hu ZM, Shao JF, Che J, Chen RF, Dong XY, Shen RF (2015) Aluminium alleviates manganese toxicity to rice by decreasing root symplastic Mn uptake and reducing availability to shoots of Mn stored in roots. Ann Bot 116(2):237\u2013246. https:\/\/doi.org\/10.1093\/aob\/mcv090","journal-title":"Ann Bot"},{"issue":"2","key":"3989_CR182","doi-asserted-by":"publisher","first-page":"329","DOI":"10.1007\/s10725-018-0393-5","volume":"85","author":"J Wang","year":"2018","unstructured":"Wang J, Fang Y, Tian B, Zhang X, Zeng D, Guo L, Hu J, Xue D (2018) New QTLs identified for leaf correlative traits in rice seedlings under cadmium stress. Plant Growth Regul 85(2):329\u2013335. https:\/\/doi.org\/10.1007\/s10725-018-0393-5","journal-title":"Plant Growth Regul"},{"key":"3989_CR183","doi-asserted-by":"publisher","DOI":"10.3389\/fpls.2021.730002","volume":"12","author":"X Wang","year":"2021","unstructured":"Wang X, Li J, Li F, Pan Y, Cai D, Mao D, Chen L, Luan S (2021) Rice potassium transporter OsHAK8 mediates K\u207a uptake and translocation in response to low K\u207a stress. Front Plant Sci 12:730002. https:\/\/doi.org\/10.3389\/fpls.2021.730002","journal-title":"Front Plant Sci"},{"key":"3989_CR184","doi-asserted-by":"publisher","DOI":"10.3389\/fgene.2022.944529","volume":"13","author":"J Wang","year":"2022","unstructured":"Wang J, Yang W, Zhang S, Dong J, Yang T, Ma Y, Zhou L, Chen J, Liu B, Zhao J (2022) Mining candidate genes for rice cadmium accumulation in the shoot through a genome-wide association study and transcriptomic analysis. Front Genet 13:944529. https:\/\/doi.org\/10.3389\/fgene.2022.944529","journal-title":"Front Genet"},{"issue":"5","key":"3989_CR185","doi-asserted-by":"publisher","first-page":"1358","DOI":"10.1093\/jxb\/erac516","volume":"74","author":"P Wang","year":"2023","unstructured":"Wang P, Wan N, Horst WJ, Yang ZB (2023a) From stress to responses: aluminium-induced signalling in the root apex. J Exp Bot 74(5):1358\u20131371. https:\/\/doi.org\/10.1093\/jxb\/erac516","journal-title":"J Exp Bot"},{"key":"3989_CR186","doi-asserted-by":"publisher","DOI":"10.1016\/j.jhazmat.2023.131010","volume":"449","author":"W Wang","year":"2023","unstructured":"Wang W, Man Z, Li X, Chen R, You Z, Pan T, Dai X, Xiao H, Liu F (2023b) Response mechanism and rapid detection of phenotypic information in rice root under heavy metal stress. J Hazard Mater 449:131010. https:\/\/doi.org\/10.1016\/j.jhazmat.2023.131010","journal-title":"J Hazard Mater"},{"issue":"3","key":"3989_CR187","doi-asserted-by":"publisher","first-page":"1240","DOI":"10.1104\/pp.107.100370","volume":"144","author":"D Weiss","year":"2007","unstructured":"Weiss D, Ori N (2007) Mechanisms of cross talk between gibberellin and other hormones. Plant Physiol 144(3):1240\u20131246. https:\/\/doi.org\/10.1104\/pp.107.100370","journal-title":"Plant Physiol"},{"key":"3989_CR188","doi-asserted-by":"publisher","first-page":"1355","DOI":"10.1080\/01904167.2013.790428","volume":"36","author":"XY Weng","year":"2013","unstructured":"Weng XY, Zhao LL, Zheng CJ, Zhu JW (2013) Characteristics of the hyperaccumulator plant Phytolacca acinosa(Phytolaccaceae) in response to excess manganese. J Plant Nutr 36:1355\u20131365. https:\/\/doi.org\/10.1080\/01904167.2013.790428","journal-title":"J Plant Nutr"},{"issue":"1","key":"3989_CR189","doi-asserted-by":"publisher","first-page":"71","DOI":"10.1111\/j.1469-8137.2008.02638.x","volume":"181","author":"CKE Wong","year":"2009","unstructured":"Wong CKE, Cobbett CS (2009) HMA P-type ATPases are the major mechanism for root-to-shoot Cd translocation in Arabidopsis thaliana. New Phytol 181(1):71\u201378. https:\/\/doi.org\/10.1111\/j.1469-8137.2008.02638.x","journal-title":"New Phytol"},{"key":"3989_CR190","doi-asserted-by":"publisher","first-page":"1295","DOI":"10.1007\/s001220051438","volume":"100","author":"P Wu","year":"2000","unstructured":"Wu P, Liao CY, Hu B, Yi KK, Jin WZ, Ni JJ, He C (2000) QTLs and epistasis for aluminum tolerance in rice (Oryza sativa L.) at different seeding stages. Theor Appl Genet 100:1295\u20131303. https:\/\/doi.org\/10.1007\/s001220051438","journal-title":"Theor Appl Genet"},{"issue":"43","key":"3989_CR191","doi-asserted-by":"publisher","first-page":"18381","DOI":"10.1073\/pnas.1004949107","volume":"107","author":"J Xia","year":"2010","unstructured":"Xia J, Yamaji N, Kasai T, Ma JF (2010) Plasma membrane-localized transporter for aluminum in rice. Proc Natl Acad Sci USA 107(43):18381\u201318385. https:\/\/doi.org\/10.1073\/pnas.1004949107","journal-title":"Proc Natl Acad Sci USA"},{"key":"3989_CR192","doi-asserted-by":"publisher","first-page":"755","DOI":"10.1007\/s00425-009-0984-5","volume":"230","author":"J Xiong","year":"2009","unstructured":"Xiong J, An L, Lu H, Zhu C (2009) Exogenous nitric oxide enhances cadmium tolerance of rice by increasing pectin and hemicellulose contents in root cell wall. Planta 230:755\u2013765. https:\/\/doi.org\/10.1007\/s00425-009-0984-5","journal-title":"Planta"},{"key":"3989_CR193","doi-asserted-by":"publisher","first-page":"11319","DOI":"10.1007\/s11356-017-8775-1","volume":"24","author":"Q Xu","year":"2017","unstructured":"Xu Q, Wang C, Li S, Li B, Li Q, Chen G, Chen W, Wang F (2017) Cadmium adsorption, chelation and compartmentalization limit root-to-shoot translocation of cadmium in rice (Oryza sativa L.). Environ Sci Pollut Res 24:11319\u201311330. https:\/\/doi.org\/10.1007\/s11356-017-8775-1","journal-title":"Environ Sci Pollut Res"},{"key":"3989_CR194","doi-asserted-by":"publisher","first-page":"37","DOI":"10.1007\/s10681-006-9089-4","volume":"150","author":"Y Xue","year":"2006","unstructured":"Xue Y, Wan J, Jiang L, Wang C, Liu L, Zhang YM, Zhai H (2006) Identification of quantitative trait loci associated with aluminum tolerance in rice (Oryza sativa L.). Euphytica 150:37\u201345. https:\/\/doi.org\/10.1007\/s10681-006-9089-4","journal-title":"Euphytica"},{"key":"3989_CR195","doi-asserted-by":"publisher","first-page":"255","DOI":"10.1007\/s00425-007-0613-0","volume":"227","author":"Y Xue","year":"2007","unstructured":"Xue Y, Jiang L, Su N, Wang JK, Deng P, Ma JF, Zhai HQ, Wan JM (2007) The genetic basis and fine-mapping of a stable quantitative-trait locus for aluminium tolerance in rice. Planta 227:255\u2013262. https:\/\/doi.org\/10.1007\/s00425-007-0613-0","journal-title":"Planta"},{"issue":"3","key":"3989_CR196","doi-asserted-by":"publisher","DOI":"10.1007\/s10681-008-9785-3","volume":"165","author":"D Xue","year":"2009","unstructured":"Xue D, Chen M, Zhang G (2009) Mapping of QTLs associated with cadmium tolerance and accumulation during seedling stage in rice (Oryza sativa L.). Euphytica 165(3):587. https:\/\/doi.org\/10.1007\/s10681-008-9785-3","journal-title":"Euphytica"},{"issue":"4","key":"3989_CR197","doi-asserted-by":"publisher","first-page":"227","DOI":"10.1139\/gen-2012-0106","volume":"56","author":"YF Yan","year":"2013","unstructured":"Yan YF, Lestari P, Lee KJ, Kim MY, Lee SH, Lee BW (2013) Identification of quantitative trait loci for cadmium accumulation and distribution in rice (Oryza sativa). Genome 56(4):227\u2013232. https:\/\/doi.org\/10.1139\/gen-2012-0106","journal-title":"Genome"},{"issue":"1","key":"3989_CR198","doi-asserted-by":"publisher","DOI":"10.1038\/s41467-019-10544-y","volume":"10","author":"H Yan","year":"2019","unstructured":"Yan H, Xu W, Xie J, Gao Y, Wu L, Sun L, Feng L, Chen X, Zhang T, Dai C, He Z (2019) Variation of a major facilitator superfamily gene contributes to differential cadmium accumulation between rice subspecies. Nat Commun 10(1):2562. https:\/\/doi.org\/10.1038\/s41467-019-10544-y","journal-title":"Nat Commun"},{"key":"3989_CR199","doi-asserted-by":"publisher","first-page":"277","DOI":"10.1007\/s11104-008-9869-9","volume":"319","author":"ZB Yang","year":"2009","unstructured":"Yang ZB, You JF, Xu MY, Yang ZM (2009) Interaction between aluminum toxicity and manganese toxicity in soybean (Glycine max). Plant Soil 319:277\u2013289. https:\/\/doi.org\/10.1007\/s11104-008-9869-9","journal-title":"Plant Soil"},{"issue":"3","key":"3989_CR200","doi-asserted-by":"publisher","first-page":"508","DOI":"10.1042\/bj0570508","volume":"57","author":"EW Yemm","year":"1954","unstructured":"Yemm EW, Willis A (1954) The estimation of carbohydrates in plant extracts by anthrone. Biochem J 57(3):508. https:\/\/doi.org\/10.1042\/bj0570508","journal-title":"Biochem J"},{"issue":"1","key":"3989_CR201","doi-asserted-by":"publisher","DOI":"10.1186\/s12870-021-03145-9","volume":"21","author":"J Yu","year":"2021","unstructured":"Yu J, Liu C, Lin H, Zhang B, Li X, Yuan Q, Liu T, He H, Wei Z, Ding S, Shang L (2021) Loci and natural alleles for cadmium-mediated growth responses revealed by a genome wide association study and transcriptome analysis in rice. BMC Plant Biol 21(1):374. https:\/\/doi.org\/10.1186\/s12870-021-03145-9","journal-title":"BMC Plant Biol"},{"issue":"1","key":"3989_CR202","doi-asserted-by":"publisher","first-page":"131","DOI":"10.1080\/00103628709367806","volume":"18","author":"BA Zarcinas","year":"1987","unstructured":"Zarcinas BA, Cartwright B, Spouncer LR (1987) Nitric acid digestion and multi-element analysis of plant material by inductively coupled plasma spectrometry. Commun Soil Sci Plant Anal 18(1):131\u2013146. https:\/\/doi.org\/10.1080\/00103628709367806","journal-title":"Commun Soil Sci Plant Anal"},{"issue":"19","key":"3989_CR203","doi-asserted-by":"publisher","DOI":"10.3390\/ijms231911771","volume":"23","author":"J Zhan","year":"2022","unstructured":"Zhan J, Zou W, Li S, Tang J, Lu X, Meng L, Ye G (2022) OsNAC15 regulates tolerance to zinc deficiency and cadmium by binding to OsZIP7 and OsZIP10 in rice. Int J Mol Sci 23(19):11771. https:\/\/doi.org\/10.3390\/ijms231911771","journal-title":"Int J Mol Sci"},{"issue":"2","key":"3989_CR204","doi-asserted-by":"publisher","first-page":"173","DOI":"10.1007\/s10681-011-0346-9","volume":"180","author":"X Zhang","year":"2011","unstructured":"Zhang X, Zhang G, Guo L, Wang H, Zeng D, Dong G, Qian Q, Xue D (2011) Identification of quantitative trait loci for Cd and Zn concentrations of brown rice grown in Cd-polluted soils. Euphytica 180(2):173\u2013179. https:\/\/doi.org\/10.1007\/s10681-011-0346-9","journal-title":"Euphytica"},{"key":"3989_CR205","doi-asserted-by":"publisher","DOI":"10.3389\/fpls.2016.01415","volume":"7","author":"P Zhang","year":"2016","unstructured":"Zhang P, Zhong K, Shahid MQ, Li J (2016) Association mapping for aluminum tolerance in a core collection of rice landraces. Front Plant Sci 7:188142. https:\/\/doi.org\/10.3389\/fpls.2016.01415","journal-title":"Front Plant Sci"},{"key":"3989_CR206","doi-asserted-by":"publisher","DOI":"10.1186\/s12870-019-2036-z","author":"P Zhang","year":"2019","unstructured":"Zhang P, Zhong K, Zhong Z, Tong H (2019) Mining candidate gene for rice aluminum tolerance through genome wide association study and transcriptomic analysis. BMC Plant Biol. https:\/\/doi.org\/10.1186\/s12870-019-2036-z","journal-title":"BMC Plant Biol"},{"issue":"10\u201311","key":"3989_CR207","doi-asserted-by":"publisher","first-page":"503","DOI":"10.1097\/SS.0000000000000086","volume":"179","author":"XQ Zhao","year":"2014","unstructured":"Zhao XQ, Chen RF, Shen RF (2014) Coadaptation of plants to multiple stresses in acidic soils. Soil Sci 179(10\u201311):503\u2013513. https:\/\/doi.org\/10.1097\/SS.0000000000000086","journal-title":"Soil Sci"},{"issue":"1","key":"3989_CR208","doi-asserted-by":"publisher","first-page":"61","DOI":"10.1186\/s12284-018-0254-x","volume":"11","author":"J Zhao","year":"2018","unstructured":"Zhao J, Yang W, Zhang S, Yang T, Liu Q, Dong J, Fu H, Mao X, Liu B (2018a) Genome-wide association study and candidate gene analysis of rice cadmium accumulation in grain in a diverse rice collection. Rice 11(1):61. https:\/\/doi.org\/10.1186\/s12284-018-0254-x","journal-title":"Rice"},{"key":"3989_CR209","doi-asserted-by":"publisher","DOI":"10.3389\/fpls.2018.01838","volume":"9","author":"M Zhao","year":"2018","unstructured":"Zhao M, Song J, Wu A, Li J (2018b) Mining beneficial genes for aluminum tolerance within a core collection of rice landraces through genome-wide association mapping with high density SNPs from specific-locus amplified fragment sequencing. Front Plant Sci 9:372189. https:\/\/doi.org\/10.3389\/fpls.2018.01838","journal-title":"Front Plant Sci"}],"container-title":["Plant Cell Reports"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/link.springer.com\/content\/pdf\/10.1007\/s00299-026-03989-1.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/link.springer.com\/article\/10.1007\/s00299-026-03989-1","content-type":"text\/html","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/link.springer.com\/content\/pdf\/10.1007\/s00299-026-03989-1.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2026,10,12]],"date-time":"2026-10-12T20:01:51Z","timestamp":1791835311000},"score":1,"resource":{"primary":{"URL":"https:\/\/link.springer.com\/10.1007\/s00299-026-03989-1"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2026,9,29]]},"references-count":209,"journal-issue":{"issue":"10","published-print":{"date-parts":[[2026,10]]}},"alternative-id":["3989"],"URL":"https:\/\/doi.org\/10.1007\/s00299-026-03989-1","relation":{},"ISSN":["0721-7714","1432-203X"],"issn-type":[{"value":"0721-7714","type":"print"},{"value":"1432-203X","type":"electronic"}],"subject":[],"published":{"date-parts":[[2026,9,29]]},"assertion":[{"value":"18 July 2026","order":1,"name":"received","label":"Received","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"12 September 2026","order":2,"name":"accepted","label":"Accepted","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"29 September 2026","order":3,"name":"first_online","label":"First Online","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper.","order":1,"name":"Ethics","label":"Conflict of interest","group":{"name":"EthicsHeading","label":"Declarations"}},{"value":"Not applicable.","order":2,"name":"Ethics","label":"Ethics approval","group":{"name":"EthicsHeading","label":"Declarations"}},{"value":"Not applicable.","order":3,"name":"Ethics","label":"Consent to participate","group":{"name":"EthicsHeading","label":"Declarations"}},{"value":"Not applicable.","order":4,"name":"Ethics","label":"Consent to publish","group":{"name":"EthicsHeading","label":"Declarations"}}],"article-number":"311"}}