{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,10,29]],"date-time":"2025-10-29T02:53:02Z","timestamp":1761706382734,"version":"3.37.3"},"reference-count":64,"publisher":"Springer Science and Business Media LLC","issue":"5","license":[{"start":{"date-parts":[[2018,3,5]],"date-time":"2018-03-05T00:00:00Z","timestamp":1520208000000},"content-version":"tdm","delay-in-days":0,"URL":"http:\/\/www.springer.com\/tdm"},{"start":{"date-parts":[[2018,3,5]],"date-time":"2018-03-05T00:00:00Z","timestamp":1520208000000},"content-version":"vor","delay-in-days":0,"URL":"http:\/\/www.springer.com\/tdm"}],"funder":[{"DOI":"10.13039\/100000053","name":"National Eye Institute","doi-asserted-by":"publisher","award":["Ey10343","P30 EY001792"],"award-info":[{"award-number":["Ey10343","P30 EY001792"]}],"id":[{"id":"10.13039\/100000053","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/100006108","name":"National Center for Advancing Translational Sciences","doi-asserted-by":"publisher","award":["UL1TR000050"],"award-info":[{"award-number":["UL1TR000050"]}],"id":[{"id":"10.13039\/100006108","id-type":"DOI","asserted-by":"publisher"}]},{"name":"Illinois Society for Prevention of Blindness"},{"name":"Craig Foundation"},{"DOI":"10.13039\/100005831","name":"Foundation for Anesthesia Education and Research","doi-asserted-by":"publisher","id":[{"id":"10.13039\/100005831","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":["link.springer.com"],"crossmark-restriction":false},"short-container-title":["Graefes Arch Clin Exp Ophthalmol"],"published-print":{"date-parts":[[2018,5]]},"DOI":"10.1007\/s00417-018-3905-0","type":"journal-article","created":{"date-parts":[[2018,3,5]],"date-time":"2018-03-05T02:35:37Z","timestamp":1520217337000},"page":"935-949","update-policy":"https:\/\/doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":8,"title":["Gene expression in retinal ischemic post-conditioning"],"prefix":"10.1007","volume":"256","author":[{"given":"Konrad","family":"Kadzielawa","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Biji","family":"Mathew","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Clara R.","family":"Stelman","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Arden Zhengdeng","family":"Lei","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Leianne","family":"Torres","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-4955-9855","authenticated-orcid":false,"given":"Steven","family":"Roth","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"297","published-online":{"date-parts":[[2018,3,5]]},"reference":[{"key":"3905_CR1","doi-asserted-by":"publisher","first-page":"361","DOI":"10.1167\/iovs.06-0510","volume":"48","author":"L Zheng","year":"2007","unstructured":"Zheng L, Gong B, Hatala DA, Kern TS (2007) Retinal ischemia and reperfusion causes capillary degeneration: similarities to diabetes. Invest Ophthalmol Vis Sci 48:361\u2013367","journal-title":"Invest Ophthalmol Vis Sci"},{"key":"3905_CR2","doi-asserted-by":"publisher","first-page":"521","DOI":"10.1016\/j.exer.2011.03.015","volume":"92","author":"JC Dreixler","year":"2011","unstructured":"Dreixler JC, Poston JN, Shaikh AR, Alexander M, Tupper KY, Marcet MM, Bernaudin M, Roth S (2011) Delayed post-ischemic conditioning significantly improves the outcome after retinal ischemia. Exp Eye Res 92:521\u2013527. \n                    https:\/\/doi.org\/10.1016\/j.exer.2011.03.015","journal-title":"Exp Eye Res"},{"key":"3905_CR3","doi-asserted-by":"publisher","first-page":"3922","DOI":"10.1167\/iovs.08-3344","volume":"50","author":"DC Fernandez","year":"2009","unstructured":"Fernandez DC, Bordone MP, Chianelli MS, Rosenstein RE (2009) Retinal neuroprotection against ischemia-reperfusion damage induced by postconditioning. Invest Ophthalmol Vis Sci 50:3922\u20133930","journal-title":"Invest Ophthalmol Vis Sci"},{"issue":"Suppl 1","key":"3905_CR4","doi-asserted-by":"publisher","first-page":"S102","DOI":"10.1016\/S0039-6257(99)00044-2","volume":"43","author":"NN Osborne","year":"1999","unstructured":"Osborne NN, Ugarte M, Chao M, Chidlow G, Bae JH, Wood JP, Nash MS (1999) Neuroprotection in relation to retinal ischemia and relevance to glaucoma. Surv Ophthalmol 43(Suppl 1):S102\u2013S128","journal-title":"Surv Ophthalmol"},{"key":"3905_CR5","doi-asserted-by":"publisher","first-page":"103","DOI":"10.1159\/000316965","volume":"116","author":"S Limalanathan","year":"2010","unstructured":"Limalanathan S, Andersen GO, Hoffmann P, Klow N-E, Abdelnoor M, Eritsland J (2010) Rationale and design of the POSTEMI (postconditioning in ST-elevation myocardial infarction) study. Cardiology 116:103\u2013109","journal-title":"Cardiology"},{"key":"3905_CR6","doi-asserted-by":"publisher","first-page":"873","DOI":"10.1038\/jcbfm.2009.13","volume":"29","author":"H Zhao","year":"2009","unstructured":"Zhao H (2009) Ischemic postconditioning as a novel avenue to protect against brain injury after stroke. J Cereb Blood Flow Metab 29:873\u2013885","journal-title":"J Cereb Blood Flow Metab"},{"key":"3905_CR7","doi-asserted-by":"publisher","first-page":"309","DOI":"10.1007\/s12031-011-9523-5","volume":"45","author":"JC Dreixler","year":"2011","unstructured":"Dreixler JC, Sampat A, Shaikh AR, Alexander M, Marcet MM, Roth S (2011) Protein kinase B (Akt) and mitogen-activated protein kinase p38alpha in retinal ischemic post-conditioning. J Mol Neurosci 45:309\u2013320. \n                    https:\/\/doi.org\/10.1007\/s12031-011-9523-5","journal-title":"J Mol Neurosci"},{"key":"3905_CR8","doi-asserted-by":"publisher","first-page":"28736","DOI":"10.1038\/srep28736","volume":"6","author":"M Yasuda","year":"2016","unstructured":"Yasuda M, Tanaka Y, Omodaka K, Nishiguchi KM, Nakamura O, Tsuda S, Nakazawa T (2016) Transcriptome profiling of the rat retina after optic nerve transection. Sci Rep 6:28736. \n                    https:\/\/doi.org\/10.1038\/srep28736","journal-title":"Sci Rep"},{"key":"3905_CR9","doi-asserted-by":"publisher","first-page":"57","DOI":"10.1038\/nrg2484","volume":"10","author":"Z Wang","year":"2009","unstructured":"Wang Z, Gerstein M, Snyder M (2009) RNA-Seq: a revolutionary tool for transcriptomics. Nat Rev Genet 10:57\u201363. \n                    https:\/\/doi.org\/10.1038\/nrg2484","journal-title":"Nat Rev Genet"},{"key":"3905_CR10","doi-asserted-by":"publisher","unstructured":"Brown J, Pirrung M, McCue LA (2017) FQC dashboard: integrates FastQC results into a web based interactive and extensible FastQ quality control tool. Bioinformatics. \n                    https:\/\/doi.org\/10.1093\/bioinformatics\/btx373","DOI":"10.1093\/bioinformatics\/btx373"},{"key":"3905_CR11","doi-asserted-by":"publisher","first-page":"589","DOI":"10.1093\/bioinformatics\/btp698","volume":"26","author":"H Li","year":"2010","unstructured":"Li H, Durbin R (2010) Fast and accurate long-read alignment with burrows-wheeler transform. Bioinformatics 26:589\u2013595. \n                    https:\/\/doi.org\/10.1093\/bioinformatics\/btp698","journal-title":"Bioinformatics"},{"key":"3905_CR12","doi-asserted-by":"publisher","first-page":"923","DOI":"10.1093\/bioinformatics\/btt656","volume":"30","author":"Y Liao","year":"2014","unstructured":"Liao Y, Smyth GK, Shi W (2014) featureCounts: an efficient general purpose program for assigning sequence reads to genomic features. Bioinformatics 30:923\u2013930. \n                    https:\/\/doi.org\/10.1093\/bioinformatics\/btt656","journal-title":"Bioinformatics"},{"key":"3905_CR13","doi-asserted-by":"publisher","first-page":"139","DOI":"10.1093\/bioinformatics\/btp616","volume":"26","author":"MD Robinson","year":"2010","unstructured":"Robinson MD, McCarthy DJ, Smyth GK (2010) edgeR: a Bioconductor package for differential expression analysis of digital gene expression data. Bioinformatics 26:139\u2013140. \n                    https:\/\/doi.org\/10.1093\/bioinformatics\/btp616","journal-title":"Bioinformatics"},{"key":"3905_CR14","doi-asserted-by":"publisher","first-page":"1765","DOI":"10.1038\/nprot.2013.099","volume":"8","author":"S Anders","year":"2013","unstructured":"Anders S, McCarthy DJ, Chen Y, Okoniewski M, Smyth GK, Huber W, Robinson MD (2013) Count-based differential expression analysis of RNA sequencing data using R and Bioconductor. Nat Protoc 8:1765\u20131786. \n                    https:\/\/doi.org\/10.1038\/nprot.2013.099","journal-title":"Nat Protoc"},{"key":"3905_CR15","doi-asserted-by":"crossref","first-page":"289","DOI":"10.1111\/j.2517-6161.1995.tb02031.x","volume":"57","author":"Y Benjamini","year":"1995","unstructured":"Benjamini Y, Hochberg Y (1995) Controlling the false discovery rate: a practical and powerful approach to multiple testing. J R Stat Soc B (Methodological) 57:289\u2013300","journal-title":"J R Stat Soc B (Methodological)"},{"key":"3905_CR16","doi-asserted-by":"publisher","first-page":"2597","DOI":"10.1002\/pmic.201400515","volume":"15","author":"M Pathan","year":"2015","unstructured":"Pathan M, Keerthikumar S, Ang CS, Gangoda L, Quek CY, Williamson NA, Mouradov D, Sieber OM, Simpson RJ, Salim A, Bacic A, Hill AF, Stroud DA, Ryan MT, Agbinya JI, Mariadason JM, Burgess AW, Mathivanan S (2015) FunRich: an open access standalone functional enrichment and interaction network analysis tool. Proteomics 15:2597\u20132601. \n                    https:\/\/doi.org\/10.1002\/pmic.201400515","journal-title":"Proteomics"},{"key":"3905_CR17","doi-asserted-by":"publisher","first-page":"25","DOI":"10.1038\/75556","volume":"25","author":"M Ashburner","year":"2000","unstructured":"Ashburner M, Ball CA, Blake JA, Botstein D, Butler H, Cherry JM, Davis AP, Dolinski K, Dwight SS, Eppig JT, Harris MA, Hill DP, Issel-Tarver L, Kasarskis A, Lewis S, Matese JC, Richardson JE, Ringwald M, Rubin GM, Sherlock G (2000) Gene ontology: tool for the unification of biology. The gene ontology consortium. Nat Genet 25:25\u201329. \n                    https:\/\/doi.org\/10.1038\/75556","journal-title":"Nat Genet"},{"key":"3905_CR18","doi-asserted-by":"publisher","first-page":"D1049","DOI":"10.1093\/nar\/gku1179","volume":"43","author":"Collaborators","year":"2015","unstructured":"Collaborators (2015) Gene ontology consortium: going forward. Nucleic Acids Res 43:D1049\u2013D1056. \n                    https:\/\/doi.org\/10.1093\/nar\/gku1179","journal-title":"Nucleic Acids Res"},{"key":"3905_CR19","doi-asserted-by":"publisher","first-page":"7.15.1","DOI":"10.1002\/cpbi.24","volume":"57","author":"S Ahsan","year":"2017","unstructured":"Ahsan S, Draghici S (2017) Identifying significantly impacted pathways and putative mechanisms with iPathwayGuide. Curr Protoc Bioinformatics 57:7.15.1\u20137.15.30. \n                    https:\/\/doi.org\/10.1002\/cpbi.24","journal-title":"Curr Protoc Bioinformatics"},{"key":"3905_CR20","doi-asserted-by":"publisher","first-page":"1537","DOI":"10.1101\/gr.6202607","volume":"17","author":"S Draghici","year":"2007","unstructured":"Draghici S, Khatri P, Tarca AL, Amin K, Done A, Voichita C, Georgescu C, Romero R (2007) A systems biology approach for pathway level analysis. Genome Res 17:1537\u20131545. \n                    https:\/\/doi.org\/10.1101\/gr.6202607","journal-title":"Genome Res"},{"key":"3905_CR21","doi-asserted-by":"publisher","first-page":"27","DOI":"10.1093\/nar\/28.1.27","volume":"28","author":"M Kanehisa","year":"2000","unstructured":"Kanehisa M, Goto S (2000) KEGG: kyoto encyclopedia of genes and genomes. Nucleic Acids Res 28:27\u201330","journal-title":"Nucleic Acids Res"},{"issue":"Suppl 1","key":"3905_CR22","doi-asserted-by":"publisher","first-page":"57","DOI":"10.4137\/CIN.S21631","volume":"14","author":"HC Huang","year":"2015","unstructured":"Huang HC, Niu Y, Qin LX (2015) Differential expression analysis for RNA-Seq: an overview of statistical methods and computational software. Cancer Informat 14(Suppl 1):57\u201367. \n                    https:\/\/doi.org\/10.4137\/CIN.S21631","journal-title":"Cancer Informat"},{"key":"3905_CR23","doi-asserted-by":"publisher","first-page":"198","DOI":"10.1038\/nature14046","volume":"516","author":"SMI Hussein","year":"2014","unstructured":"Hussein SMI, Puri MC, Tonge PD, Benevento M, Corso AJ, Clancy JL, Mosbergen R, Li M, Lee D-S, Cloonan N, Wood DLA, Munoz J, Middleton R, Korn O, Patel HR, White CA, Shin J-Y, Gauthier ME, Cao K-AL, Kim J-I, Mar JC, Shakiba N, Ritchie W, Rasko JEJ, Grimmond SM, Zandstra PW, Wells CA, Preiss T, Seo J-S, Heck AJR, Rogers IM, Nagy A (2014) Genome-wide characterization of the routes to pluripotency. Nature 516:198\u2013206. \n                    https:\/\/doi.org\/10.1038\/nature14046","journal-title":"Nature"},{"key":"3905_CR24","doi-asserted-by":"publisher","DOI":"10.1142\/S0219720012310038","volume":"10","author":"W Li","year":"2012","unstructured":"Li W (2012) Volcano plots in analyzing differential expressions with mRNA microarrays. J Bioinforma Comput Biol 10:1231003. \n                    https:\/\/doi.org\/10.1142\/S0219720012310038","journal-title":"J Bioinforma Comput Biol"},{"key":"3905_CR25","doi-asserted-by":"publisher","first-page":"926","DOI":"10.1038\/nbt.3001","volume":"32","author":"C Wang","year":"2014","unstructured":"Wang C, Gong B, Bushel PR, Thierry-Mieg J, Thierry-Mieg D, Xu J, Fang H, Hong H, Shen J, Su Z, Meehan J, Li X, Yang L, Li H, Labaj PP, Kreil DP, Megherbi D, Gaj S, Caiment F, van Delft J, Kleinjans J, Scherer A, Devanarayan V, Wang J, Yang Y, Qian H-R, Lancashire LJ, Bessarabova M, Nikolsky Y, Furlanello C, Chierici M, Albanese D, Jurman G, Riccadonna S, Filosi M, Visintainer R, Zhang KK, Li J, Hsieh J-H, Svoboda DL, Fuscoe JC, Deng Y, Shi L, Paules RS, Auerbach SS, Tong W (2014) The concordance between RNA-seq and microarray data depends on chemical treatment and transcript abundance. Nat Biotechnol 32:926\u2013932. \n                    https:\/\/doi.org\/10.1038\/nbt.3001","journal-title":"Nat Biotechnol"},{"key":"3905_CR26","first-page":"3059","volume":"43","author":"C Zhang","year":"2002","unstructured":"Zhang C, Rosenbaum DM, Shaikh AR, Li Q, Rosenbaum PS, Pelham DJ, Roth S (2002) Ischemic preconditioning attenuates apoptosis following retinal ischemia in rats. Invest Ophthalmol Vis Sci 43:3059\u20133066","journal-title":"Invest Ophthalmol Vis Sci"},{"key":"3905_CR27","doi-asserted-by":"publisher","first-page":"466","DOI":"10.1046\/j.1471-4159.2001.00258.x","volume":"77","author":"M Singh","year":"2001","unstructured":"Singh M, Savitz SI, Hoque R, Rosenbaum PS, Roth S, Rosenbaum DM (2001) Cell-specific caspase expression by different neuronal phenotypes in transient retinal ischemia. J Neurochem 77:466\u2013475","journal-title":"J Neurochem"},{"key":"3905_CR28","doi-asserted-by":"publisher","first-page":"3605","DOI":"10.1167\/iovs.07-0817","volume":"49","author":"S Berger","year":"2008","unstructured":"Berger S, Savitz SI, Nijhawan S, Singh M, David J, Rosenbaum PS, Rosenbaum DM (2008) Deleterious role of TNF-alpha in retinal ischemia-reperfusion injury. Invest Ophthalmol Vis Sci 49:3605\u20133610. \n                    https:\/\/doi.org\/10.1167\/iovs.07-0817","journal-title":"Invest Ophthalmol Vis Sci"},{"key":"3905_CR29","doi-asserted-by":"publisher","first-page":"211","DOI":"10.1167\/iovs.12-10364","volume":"54","author":"T Wan","year":"2013","unstructured":"Wan T, Xu Z, Zhou HJ, Zhang H, Luo Y, Li Y, Min W (2013) Functional analyses of TNFR2 in physiological and pathological retina angiogenesis. Invest Ophthalmol Vis Sci 54:211\u2013221. \n                    https:\/\/doi.org\/10.1167\/iovs.12-10364","journal-title":"Invest Ophthalmol Vis Sci"},{"key":"3905_CR30","first-page":"610","volume":"39","author":"S Kuroiwa","year":"1998","unstructured":"Kuroiwa S, Katai N, Shibuki H, Kurokawa T, Umihira J, Nikaido T, Kametani K, Yoshimura N (1998) Expression of cell cycle-related genes in dying cells in retinal ischemic injury. Invest Ophthalmol Vis Sci 39:610\u2013617","journal-title":"Invest Ophthalmol Vis Sci"},{"key":"3905_CR31","doi-asserted-by":"publisher","first-page":"10763","DOI":"10.1523\/JNEUROSCI.3883-04.2004","volume":"24","author":"CY Kuan","year":"2004","unstructured":"Kuan CY, Schloemer AJ, Lu A, Burns KA, Weng WL, Williams MT, Strauss KI, Vorhees CV, Flavell RA, Davis RJ, Sharp FR, Rakic P (2004) Hypoxia-ischemia induces DNA synthesis without cell proliferation in dying neurons in adult rodent brain. J Neurosci 24:10763\u201310772. \n                    https:\/\/doi.org\/10.1523\/jneurosci.3883-04.2004","journal-title":"J Neurosci"},{"key":"3905_CR32","doi-asserted-by":"publisher","first-page":"712","DOI":"10.1080\/15384101.2015.1004937","volume":"14","author":"JM Frade","year":"2015","unstructured":"Frade JM, Ovejero-Benito MC (2015) Neuronal cell cycle: the neuron itself and its circumstances. Cell Cycle 14:712\u2013720. \n                    https:\/\/doi.org\/10.1080\/15384101.2015.1004937","journal-title":"Cell Cycle"},{"key":"3905_CR33","doi-asserted-by":"publisher","first-page":"9295","DOI":"10.1073\/pnas.1323543111","volume":"111","author":"PW Keeley","year":"2014","unstructured":"Keeley PW, Zhou C, Lu L, Williams RW, Melmed S, Reese BE (2014) Pituitary tumor-transforming gene 1 regulates the patterning of retinal mosaics. Proc Natl Acad Sci U S A 111:9295\u20139300. \n                    https:\/\/doi.org\/10.1073\/pnas.1323543111","journal-title":"Proc Natl Acad Sci U S A"},{"key":"3905_CR34","doi-asserted-by":"publisher","first-page":"636","DOI":"10.1007\/s11064-010-0334-9","volume":"36","author":"RM Yetemian","year":"2011","unstructured":"Yetemian RM, Craft CM (2011) Characterization of the pituitary tumor transforming gene 1 knockout mouse retina. Neurochem Res 36:636\u2013644. \n                    https:\/\/doi.org\/10.1007\/s11064-010-0334-9","journal-title":"Neurochem Res"},{"key":"3905_CR35","doi-asserted-by":"publisher","first-page":"769","DOI":"10.21873\/invivo.10993","volume":"30","author":"D Matsuda","year":"2016","unstructured":"Matsuda D, Matsumoto T, Honma K, Ikawa-Yoshida A, Onimaru M, Furuyama T, Nakatsu Y, Tsuzuki T, Maehara Y (2016) BUBR1 insufficiency in mice increases their sensitivity to oxidative stress. In Vivo 30:769\u2013776","journal-title":"In Vivo"},{"key":"3905_CR36","doi-asserted-by":"publisher","first-page":"598","DOI":"10.1111\/acel.12594","volume":"16","author":"Z Yang","year":"2017","unstructured":"Yang Z, Jun H, Choi CI, Yoo KH, Cho CH, Hussaini SMQ, Simmons AJ, Kim S, van Deursen JM, Baker DJ, Jang MH (2017) Age-related decline in BubR1 impairs adult hippocampal neurogenesis. Aging Cell 16:598\u2013601. \n                    https:\/\/doi.org\/10.1111\/acel.12594","journal-title":"Aging Cell"},{"key":"3905_CR37","doi-asserted-by":"publisher","first-page":"145","DOI":"10.1016\/j.sbi.2016.01.014","volume":"37","author":"TD Deegan","year":"2016","unstructured":"Deegan TD, Diffley JF (2016) MCM: one ring to rule them all. Curr Opin Struct Biol 37:145\u2013151. \n                    https:\/\/doi.org\/10.1016\/j.sbi.2016.01.014","journal-title":"Curr Opin Struct Biol"},{"key":"3905_CR38","doi-asserted-by":"publisher","first-page":"18467","DOI":"10.1073\/pnas.0506187102","volume":"102","author":"S Ryu","year":"2005","unstructured":"Ryu S, Holzschuh J, Erhardt S, Ettl AK, Driever W (2005) Depletion of minichromosome maintenance protein 5 in the zebrafish retina causes cell-cycle defect and apoptosis. Proc Natl Acad Sci U S A 102:18467\u201318472. \n                    https:\/\/doi.org\/10.1073\/pnas.0506187102","journal-title":"Proc Natl Acad Sci U S A"},{"key":"3905_CR39","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1016\/j.exer.2017.10.008","volume":"167","author":"L Nivison-Smith","year":"2017","unstructured":"Nivison-Smith L, Khoo P, Acosta ML, Kalloniatis M (2017) Vinpocetine protects inner retinal neurons with functional NMDA glutamate receptors against retinal ischemia. Exp Eye Res 167:1\u201313. \n                    https:\/\/doi.org\/10.1016\/j.exer.2017.10.008","journal-title":"Exp Eye Res"},{"key":"3905_CR40","doi-asserted-by":"publisher","first-page":"163","DOI":"10.1523\/JNEUROSCI.3200-07.2008","volume":"28","author":"B Langley","year":"2008","unstructured":"Langley B, D'Annibale MA, Suh K, Ayoub I, Tolhurst A, Bastan B, Yang L, Ko B, Fisher M, Cho S, Beal MF, Ratan RR (2008) Pulse inhibition of histone deacetylases induces complete resistance to oxidative death in cortical neurons without toxicity and reveals a role for cytoplasmic p21(waf1\/cip1) in cell cycle-independent neuroprotection. J Neurosci 28:163\u2013176. \n                    https:\/\/doi.org\/10.1523\/jneurosci.3200-07.2008","journal-title":"J Neurosci"},{"key":"3905_CR41","doi-asserted-by":"publisher","first-page":"E3030","DOI":"10.1073\/pnas.1423765112","volume":"112","author":"S Babapoor-Farrokhran","year":"2015","unstructured":"Babapoor-Farrokhran S, Jee K, Puchner B, Hassan SJ, Xin X, Rodrigues M, Kashiwabuchi F, Ma T, Hu K, Deshpande M, Daoud Y, Solomon S, Wenick A, Lutty GA, Semenza GL, Montaner S, Sodhi A (2015) Angiopoietin-like 4 is a potent angiogenic factor and a novel therapeutic target for patients with proliferative diabetic retinopathy. Proc Natl Acad Sci U S A 112:E3030\u2013E3039. \n                    https:\/\/doi.org\/10.1073\/pnas.1423765112","journal-title":"Proc Natl Acad Sci U S A"},{"key":"3905_CR42","doi-asserted-by":"publisher","first-page":"3668","DOI":"10.1096\/fj.14-268920","volume":"29","author":"CT Kesler","year":"2015","unstructured":"Kesler CT, Pereira ER, Cui CH, Nelson GM, Masuck DJ, Baish JW, Padera TP (2015) Angiopoietin-4 increases permeability of blood vessels and promotes lymphatic dilation. FASEB J 29:3668\u20133677. \n                    https:\/\/doi.org\/10.1096\/fj.14-268920","journal-title":"FASEB J"},{"key":"3905_CR43","doi-asserted-by":"publisher","first-page":"449","DOI":"10.1515\/hsz-2012-0330","volume":"394","author":"PM Jaakkola","year":"2013","unstructured":"Jaakkola PM, Rantanen K (2013) The regulation, localization, and functions of oxygen-sensing prolyl hydroxylase PHD3. Biol Chem 394:449\u2013457. \n                    https:\/\/doi.org\/10.1515\/hsz-2012-0330","journal-title":"Biol Chem"},{"key":"3905_CR44","doi-asserted-by":"publisher","first-page":"9630","DOI":"10.1073\/pnas.181341498","volume":"98","author":"F Yu","year":"2001","unstructured":"Yu F, White SB, Zhao Q, Lee FS (2001) HIF-1alpha binding to VHL is regulated by stimulus-sensitive proline hydroxylation. Proc Natl Acad Sci U S A 98:9630\u20139635. \n                    https:\/\/doi.org\/10.1073\/pnas.181341498","journal-title":"Proc Natl Acad Sci U S A"},{"key":"3905_CR45","doi-asserted-by":"publisher","first-page":"4919","DOI":"10.1167\/iovs.13-12171","volume":"54","author":"G Trichonas","year":"2013","unstructured":"Trichonas G, Lee TJ, Hoppe G, Au J, Sears JE (2013) Prolyl hydroxylase inhibition during hyperoxia prevents oxygen-induced retinopathy in the rat 50\/10 model. Invest Ophthalmol Vis Sci 54:4919\u20134926. \n                    https:\/\/doi.org\/10.1167\/iovs.13-12171","journal-title":"Invest Ophthalmol Vis Sci"},{"key":"3905_CR46","doi-asserted-by":"publisher","first-page":"2141","DOI":"10.1007\/s00424-014-1667-z","volume":"467","author":"M Vogler","year":"2015","unstructured":"Vogler M, Zieseniss A, Hesse AR, Levent E, Tiburcy M, Heinze E, Burzlaff N, Schley G, Eckardt KU, Willam C, Katschinski DM (2015) Pre- and post-conditional inhibition of prolyl-4-hydroxylase domain enzymes protects the heart from an ischemic insult. Pflugers Arch 467:2141\u20132149. \n                    https:\/\/doi.org\/10.1007\/s00424-014-1667-z","journal-title":"Pflugers Arch"},{"key":"3905_CR47","doi-asserted-by":"publisher","first-page":"H1649","DOI":"10.1152\/ajpheart.00692.2008","volume":"295","author":"MD Goodman","year":"2008","unstructured":"Goodman MD, Koch SE, Fuller-Bicer GA, Butler KL (2008) Regulating RISK: a role for JAK-STAT signaling in postconditioning? Am J Phys 295:H1649\u2013H1656. \n                    https:\/\/doi.org\/10.1152\/ajpheart.00692.2008","journal-title":"Am J Phys"},{"key":"3905_CR48","doi-asserted-by":"publisher","first-page":"240","DOI":"10.1016\/j.cardiores.2006.01.017","volume":"70","author":"DJ Hausenloy","year":"2006","unstructured":"Hausenloy DJ, Yellon DM (2006) Survival kinases in ischemic preconditioning and postconditioning. Cardiovasc Res 70:240\u2013253. \n                    https:\/\/doi.org\/10.1016\/j.cardiores.2006.01.017","journal-title":"Cardiovasc Res"},{"key":"3905_CR49","doi-asserted-by":"publisher","first-page":"37","DOI":"10.1097\/ANA.0000000000000331","volume":"29","author":"HC Kim","year":"2017","unstructured":"Kim HC, Kim E, Bae JI, Lee KH, Jeon YT, Hwang JW, Lim YJ, Min SW, Park HP (2017) Sevoflurane Postconditioning reduces apoptosis by activating the JAK-STAT pathway after transient global cerebral ischemia in rats. J Neurosurg Anesthesiol 29:37\u201345. \n                    https:\/\/doi.org\/10.1097\/ana.0000000000000331","journal-title":"J Neurosurg Anesthesiol"},{"key":"3905_CR50","doi-asserted-by":"publisher","first-page":"129","DOI":"10.1016\/j.ejphar.2016.05.024","volume":"784","author":"Y Wang","year":"2016","unstructured":"Wang Y, Wang D, Zhang L, Ye F, Li M, Wen K (2016) Role of JAK-STAT pathway in reducing cardiomyocytes hypoxia\/reoxygenation injury induced by S1P postconditioning. Eur J Pharmacol 784:129\u2013136. \n                    https:\/\/doi.org\/10.1016\/j.ejphar.2016.05.024","journal-title":"Eur J Pharmacol"},{"key":"3905_CR51","doi-asserted-by":"publisher","first-page":"85","DOI":"10.1016\/j.brainres.2014.04.001","volume":"1564","author":"KE Cox-Limpens","year":"2014","unstructured":"Cox-Limpens KE, Gavilanes AW, Zimmermann LJ, Vles JS (2014) Endogenous brain protection: what the cerebral transcriptome teaches us. Brain Res 1564:85\u2013100. \n                    https:\/\/doi.org\/10.1016\/j.brainres.2014.04.001","journal-title":"Brain Res"},{"key":"3905_CR52","doi-asserted-by":"publisher","first-page":"103","DOI":"10.3389\/fncel.2017.00103","volume":"11","author":"J Di Re","year":"2017","unstructured":"Di Re J, Wadsworth PA, Laezza F (2017) Intracellular fibroblast growth factor 14: emerging risk factor for brain disorders. Front Cell Neurosci 11:103. \n                    https:\/\/doi.org\/10.3389\/fncel.2017.00103","journal-title":"Front Cell Neurosci"},{"key":"3905_CR53","doi-asserted-by":"publisher","first-page":"154","DOI":"10.1073\/pnas.1610158114","volume":"114","author":"JL Pablo","year":"2017","unstructured":"Pablo JL, Pitt GS (2017) FGF14 is a regulator of KCNQ2\/3 channels. Proc Natl Acad Sci U S A 114:154\u2013159. \n                    https:\/\/doi.org\/10.1073\/pnas.1610158114","journal-title":"Proc Natl Acad Sci U S A"},{"key":"3905_CR54","doi-asserted-by":"publisher","first-page":"627","DOI":"10.1016\/j.neuron.2007.02.006","volume":"53","author":"EB Ziff","year":"2007","unstructured":"Ziff EB (2007) TARPs and the AMPA receptor trafficking paradox. Neuron 53:627\u2013633. \n                    https:\/\/doi.org\/10.1016\/j.neuron.2007.02.006","journal-title":"Neuron"},{"key":"3905_CR55","doi-asserted-by":"publisher","first-page":"15711","DOI":"10.1074\/jbc.C300542200","volume":"279","author":"N Machida","year":"2004","unstructured":"Machida N, Umikawa M, Takei K, Sakima N, Myagmar BE, Taira K, Uezato H, Ogawa Y, Kariya K (2004) Mitogen-activated protein kinase kinase kinase kinase 4 as a putative effector of Rap2 to activate the c-Jun N-terminal kinase. J Biol Chem 279:15711\u201315714. \n                    https:\/\/doi.org\/10.1074\/jbc.C300542200","journal-title":"J Biol Chem"},{"key":"3905_CR56","doi-asserted-by":"publisher","first-page":"8995","DOI":"10.1038\/ncomms9995","volume":"6","author":"RJ Roth Flach","year":"2015","unstructured":"Roth Flach RJ, Skoura A, Matevossian A, Danai LV, Zheng W, Cortes C, Bhattacharya SK, Aouadi M, Hagan N, Yawe JC, Vangala P, Menendez LG, Cooper MP, Fitzgibbons TP, Buckbinder L, Czech MP (2015) Endothelial protein kinase MAP4K4 promotes vascular inflammation and atherosclerosis. Nat Commun 6:8995. \n                    https:\/\/doi.org\/10.1038\/ncomms9995","journal-title":"Nat Commun"},{"key":"3905_CR57","doi-asserted-by":"publisher","first-page":"15788","DOI":"10.1074\/jbc.M114.559344","volume":"289","author":"SM Rowley","year":"2014","unstructured":"Rowley SM, Kuriakose T, Dockery LM, Tran-Ngyuen T, Gingerich AD, Wei L, Watford WT (2014) Tumor progression locus 2 (Tpl2) kinase promotes chemokine receptor expression and macrophage migration during acute inflammation. J Biol Chem 289:15788\u201315797. \n                    https:\/\/doi.org\/10.1074\/jbc.M114.559344","journal-title":"J Biol Chem"},{"key":"3905_CR58","doi-asserted-by":"publisher","first-page":"282","DOI":"10.1161\/CIRCRESAHA.117.310183","volume":"121","author":"A Ghigo","year":"2017","unstructured":"Ghigo A, Laffargue M, Li M, Hirsch E (2017) PI3K and calcium signaling in cardiovascular disease. Circ Res 121:282\u2013292. \n                    https:\/\/doi.org\/10.1161\/circresaha.117.310183","journal-title":"Circ Res"},{"key":"3905_CR59","doi-asserted-by":"publisher","first-page":"366","DOI":"10.4161\/auto.6.3.11261","volume":"6","author":"S Carloni","year":"2015","unstructured":"Carloni S, Girelli S, Scopa C, Buonocore G, Longini M, Balduini W (2015) Activation of autophagy and Akt\/CREB signaling play an equivalent role in the neuroprotective effect of rapamycin in neonatal hypoxia-ischemia. Autophagy 6:366\u2013377","journal-title":"Autophagy"},{"key":"3905_CR60","doi-asserted-by":"publisher","first-page":"873","DOI":"10.1038\/78774","volume":"3","author":"MA Dyer","year":"2000","unstructured":"Dyer MA, Cepko CL (2000) Control of Muller glial cell proliferation and activation following retinal injury. Nat Neurosci 3:873\u2013880. \n                    https:\/\/doi.org\/10.1038\/78774","journal-title":"Nat Neurosci"},{"key":"3905_CR61","doi-asserted-by":"publisher","first-page":"5","DOI":"10.1167\/tvst.6.2.5","volume":"6","author":"ML Vetter","year":"2017","unstructured":"Vetter ML, Hitchcock PF (2017) Report on the National eye Institute audacious goals initiative: replacement of retinal ganglion cells from endogenous cell sources. Transl Vis Sci Technol 6:5. \n                    https:\/\/doi.org\/10.1167\/tvst.6.2.5","journal-title":"Transl Vis Sci Technol"},{"key":"3905_CR62","doi-asserted-by":"publisher","first-page":"57","DOI":"10.1016\/j.gde.2016.05.028","volume":"40","author":"MS Wilken","year":"2016","unstructured":"Wilken MS, Reh TA (2016) Retinal regeneration in birds and mice. Curr Opin Genet Dev 40:57\u201364. \n                    https:\/\/doi.org\/10.1016\/j.gde.2016.05.028","journal-title":"Curr Opin Genet Dev"},{"key":"3905_CR63","doi-asserted-by":"publisher","first-page":"932","DOI":"10.1167\/iovs.14-15589","volume":"56","author":"K Ishikawa","year":"2015","unstructured":"Ishikawa K, Yoshida S, Kobayashi Y, Zhou Y, Nakama T, Nakao S, Sassa Y, Oshima Y, Niiro H, Akashi K, Kono T, Ishibashi T (2015) Microarray analysis of gene expression in Fibrovascular membranes excised from patients with proliferative diabetic retinopathy. Invest Ophthalmol Vis Sci 56:932\u2013946. \n                    https:\/\/doi.org\/10.1167\/iovs.14-15589","journal-title":"Invest Ophthalmol Vis Sci"},{"key":"3905_CR64","doi-asserted-by":"publisher","first-page":"882","DOI":"10.1038\/nbt.3015","volume":"32","author":"A Kratz","year":"2014","unstructured":"Kratz A, Carninci P (2014) The devil in the details of RNA-seq. Nat Biotechnol 32:882\u2013884. \n                    https:\/\/doi.org\/10.1038\/nbt.3015","journal-title":"Nat Biotechnol"}],"container-title":["Graefe's Archive for Clinical and Experimental Ophthalmology"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/link.springer.com\/article\/10.1007\/s00417-018-3905-0\/fulltext.html","content-type":"text\/html","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/s00417-018-3905-0.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/s00417-018-3905-0.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2020,5,16]],"date-time":"2020-05-16T13:09:29Z","timestamp":1589634569000},"score":1,"resource":{"primary":{"URL":"http:\/\/link.springer.com\/10.1007\/s00417-018-3905-0"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2018,3,5]]},"references-count":64,"journal-issue":{"issue":"5","published-print":{"date-parts":[[2018,5]]}},"alternative-id":["3905"],"URL":"https:\/\/doi.org\/10.1007\/s00417-018-3905-0","relation":{},"ISSN":["0721-832X","1435-702X"],"issn-type":[{"type":"print","value":"0721-832X"},{"type":"electronic","value":"1435-702X"}],"subject":[],"published":{"date-parts":[[2018,3,5]]},"assertion":[{"value":"16 August 2017","order":1,"name":"received","label":"Received","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"30 November 2017","order":2,"name":"revised","label":"Revised","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"8 January 2018","order":3,"name":"accepted","label":"Accepted","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"5 March 2018","order":4,"name":"first_online","label":"First Online","group":{"name":"ArticleHistory","label":"Article History"}},{"order":1,"name":"Ethics","group":{"name":"EthicsHeading","label":"Compliance with ethical standards"}},{"value":"Ethical approval: All procedures performed in studies involving animals were in accordance with the ethical standards of and approved by the Institutional Animal Care and Use Committee of the University of Illinois at Chicago.","order":2,"name":"Ethics","group":{"name":"EthicsHeading","label":"Animal experiments"}}]}}